Biomedical subjects

David Brasse

Publications and source records attributed to David Brasse.

4 recordsLinked to original sources

PubMed2005

Towards an inline reconstruction architecture for micro-CT systems.

Recent developments in micro-CT have revolutionized the ability to examine in vivo living experimental animal models such as mouse with a spatial resolution less than 50 microm. The main requirements of in vivo imaging for biological researchers are a good spatial resolution, a low dose induced to the animal during the full examination and a reduced acquisition and reconstruction time for screening purposes. We introduce inline acquisition and reconstruction architecture to obtain in real time the 3D attenuation map of the animal fulfilling the three previous requirements. The micro-CT system is based on commercially available x-ray detector and micro-focus x-ray source. The reconstruction architecture is based on a cluster of PCs where a dedicated communication scheme combining serial and parallel treatments is implemented. In order to obtain high performance transmission rate between the detector and the reconstruction architecture, a dedicated data acquisition system is also developed. With the proposed solution, the time required to filter and backproject a projection of 2048 x 2048 pixels inside a volume of 140 mega voxels using the Feldkamp algorithm is similar to 500 ms, the time needed to acquire the same projection.

Algorithms↗

PubMed2005

Effect of perfusion pattern and imaging sequence on gated perfusion SPECT evaluation of myocardial stunning.

UNLABELLED: The aim of this study was to determine the effect of perfusion defect and imaging sequence on the evaluation of myocardial stunning with gated perfusion SPECT. METHODS: A dynamic mathematic cardiac torso phantom was used to create 100 gated SPECT simulations (50 stress-rest and 50 rest-stress sequences) with a wide range of perfusion defects. No segmental wall motion abnormalities were created. After generating projection images, 2 additional acquisitions were simulated by thresholding the projected data to 25% and 75% of the maximum. Finally, gated SPECT projections were grouped by 2s to generate 2 series of phantoms corresponding to stress-rest and rest-stress imaging sequences. For each sequence, the first dataset was the 25% thresholded gated SPECT. Both 75% thresholded and 100% signal intensity were used as a second dataset. Each simulated gated SPECT image differed from others in the extent of myocardial scar or ischemia, but all had the same end-diastolic volume (EDV) (125 mL), end-systolic volume (ESV) (48 mL), and ejection fraction (EF) (62%). Left ventricular perfusion and function were each assessed using validated software. RESULTS: Mean stress EDV was decreased when compared with rest-simulated data (111 +/- 4.7 and 112.4 +/- 4.8 mL, respectively; P < or = 0.05), and mean stress ESV was increased when compared with rest-simulated data (44 +/- 4.2 and 42.7 +/- 4 mL, respectively; P < 0.02). The resulting mean stress EF was decreased in the same comparison (60.3% +/- 3.1% and 62% +/- 2.7%, respectively; P = 0.0001). After multivariate analysis, the difference between stress and rest EF was significantly influenced by myocardial infarction (P = 0.0027), severe extent of myocardial ischemia (P = 0.0017), and imaging sequence (P < 0.0001). A > or =5% decrease in EF on stress SPECT (i.e., myocardial stunning) was significantly associated with the stress-rest sequence (chi(2) = 26; P < 0.0001). CONCLUSION: Perfusion defects and imaging sequence had significant effects on the evaluation of myocardial stunning using gated perfusion SPECT.

Algorithms↗

PubMed2005

Correction methods for random coincidences in fully 3D whole-body PET: impact on data and image quality.

UNLABELLED: With the advantages of the increased sensitivity of fully 3-dimensional (3D) PET for whole-body imaging come the challenges of more complicated quantitative corrections and, in particular, an increase in the number of random coincidences. The most common method of correcting for random coincidences is the real-time subtraction of a delayed coincidence channel, which does not add bias but increases noise. An alternative approach is the postacquisition subtraction of a low-noise random coincidence estimate, which can be obtained either from a smoothed delayed coincidence sinogram or from a calibration scan or directly estimated. Each method makes different trade-offs between noise amplification, bias, and data-processing requirements. These trade-offs are dependent on activity injected, the local imaging environment (e.g., near the bladder), and the reconstruction algorithm. METHODS: Using fully 3D whole-body simulations and phantom studies, we investigate how the gains in noise equivalent count (NEC) rates from using a noiseless random coincidence estimation method are translated to improvements in image signal-to-noise ratio (SNR). The image SNR, however, depends on the image reconstruction method and the local imaging environment. RESULTS: We show that for fully 3D whole-body imaging using a particular set of scanners and clinical protocols, a low-noise estimate of random coincidences improves sinogram and image SNRs by approximately 15% compared with online subtraction of delayed coincidences. CONCLUSION: A 15% improvement in image SNR arises from a 32% increase in the NEC rate. Thus, scan duration can be reduced by 25% while still maintaining a constant total acquired NEC.

Algorithms↗

PubMed2003

An analytic study of the effects of attenuation on tumor detection in whole-body PET oncology imaging.

UNLABELLED: There has been considerable debate about the desirability of attenuation correction in whole-body PET oncology imaging. The advantages of attenuation correction are quantitative accuracy, whereas the perceived disadvantages are loss of contrast, noise amplification, and increased scanning time. In this work, we explain contrast changes between images reconstructed with and without attenuation correction. METHODS: To analytically explain both well-known and surprising phenomena in images reconstructed without attenuation correction, we performed a series of simulation studies, a phantom experiment, and a patient experiment. RESULTS: We showed that it is possible to calculate a priori the appearance of images reconstructed without attenuation correction. Compared with attenuation-corrected images, images without attenuation correction may have locally enhanced contrast in the abdomen or other regions of uniform attenuation, although the amount of enhancement varies with position in a complex manner. In regions of nonuniform attenuation, such as the thorax, it is possible that foci of increased tracer uptake disappear in images reconstructed without attenuation correction. The critical tracer concentration for this zero-contrast effect depends on the size, location, and density of the foci. Above the critical value, foci are visible in images with and without attenuation correction, whereas below the critical value, foci are visible in attenuation-corrected images but appear as photopenic regions in images without attenuation correction. CONCLUSION: Even though images without attenuation correction may be desired, these results suggest that all studies should at least be reconstructed with attenuation correction to avoid missing regions of elevated tracer uptake.

Female↗