Biomedical subjects

Dionisis Cavouras

Publications and source records attributed to Dionisis Cavouras.

6 recordsLinked to original sources

PubMed2006

Mammographic masses characterization based on localized texture and dataset fractal analysis using linear, neural and support vector machine classifiers.

OBJECTIVE: Localized texture analysis of breast tissue on mammograms is an issue of major importance in mass characterization. However, in contrast to other mammographic diagnostic approaches, it has not been investigated in depth, due to its inherent difficulty and fuzziness. This work aims to the establishment of a quantitative approach of mammographic masses texture classification, based on advanced classifier architectures and supported by fractal analysis of the dataset of the extracted textural features. Additionally, a comparison of the information content of the proposed feature set with that of the qualitative characteristics used in clinical practice by expert radiologists is presented. METHODS AND MATERIAL: An extensive set of textural feature functions was applied to a set of 130 digitized mammograms, in multiple configurations and scales, constructing compact datasets of textural "signatures" for benign and malignant cases of tumors. These quantitative textural datasets were subsequently studied against a set of a thorough and compact list of qualitative texture descriptions of breast mass tissue, normally considered under a typical clinical assessment, in order to investigate the discriminating value and the statistical correlation between the two sets. Fractal analysis was employed to compare the information content and dimensionality of the textural features datasets with the qualitative information provided through medical diagnosis. A wide range of linear and non-linear classification architectures was employed, including linear discriminant analysis (LDA), least-squares minimum distance (LSMD), K-nearest-neighbors (K-nn), radial basis function (RBF) and multi-layer perceptron (MLP) artificial neural network (ANN), as well as support vector machine (SVM) classifiers. The classification process was used as the means to evaluate the inherent quality and informational content of each of the datasets, as well as the objective performance of each of the classifiers themselves in real classification of mammographic breast tumors against verified diagnosis. RESULTS: Textural features extracted at larger scales and sampling box sizes proved to be more content-rich than their equivalents at smaller scales and sizes. Fractal analysis on the dimensionality of the textural datasets verified that reduced subsets of optimal feature combinations can describe the original feature space adequately for classification purposes and at least the same detail and quality as the list of qualitative texture descriptions provided by a human expert. Non-linear classifiers, especially SVMs, have been proven superior to any linear equivalent. Breast mass classification of mammograms, based only on textural features, achieved an optimal score of 83.9%, through SVM classifiers.

Artificial Intelligence↗

PubMed2005

Significance analysis of qualitative mammographic features, using linear classifiers, neural networks and support vector machines.

Advances in modern technologies and computers have enabled digital image processing to become a vital tool in conventional clinical practice, including mammography. However, the core problem of the clinical evaluation of mammographic tumors remains a highly demanding cognitive task. In order for these automated diagnostic systems to perform in levels of sensitivity and specificity similar to that of human experts, it is essential that a robust framework on problem-specific design parameters is formulated. This study is focused on identifying a robust set of clinical features that can be used as the base for designing the input of any computer-aided diagnosis system for automatic mammographic tumor evaluation. A thorough list of clinical features was constructed and the diagnostic value of each feature was verified against current clinical practices by an expert physician. These features were directly or indirectly related to the overall morphological properties of the mammographic tumor or the texture of the fine-scale tissue structures as they appear in the digitized image, while others contained external clinical data of outmost importance, like the patient's age. The entire feature set was used as an annotation list for describing the clinical properties of mammographic tumor cases in a quantitative way, such that subsequent objective analyses were possible. For the purposes of this study, a mammographic image database was created, with complete clinical evaluation descriptions and positive histological verification for each case. All tumors contained in the database were characterized according to the identified clinical features' set and the resulting dataset was used as input for discrimination and diagnostic value analysis for each one of these features. Specifically, several standard methodologies of statistical significance analysis were employed to create feature rankings according to their discriminating power. Moreover, three different classification models, namely linear classifiers, neural networks and support vector machines, were employed to investigate the true efficiency of each one of them, as well as the overall complexity of the diagnostic task of mammographic tumor characterization. Both the statistical and the classification results have proven the explicit correlation of all the selected features with the final diagnosis, qualifying them as an adequate input base for any type of similar automated diagnosis system. The underlying complexity of the diagnostic task has justified the high value of sophisticated pattern recognition architectures.

Analysis of Variance↗

PubMed2005

Development of a support vector machine-based image analysis system for assessing the thyroid nodule malignancy risk on ultrasound.

An SVM-based image analysis system was developed for assessing the malignancy risk of thyroid nodules. Ultrasound images of 120 cytology confirmed thyroid nodules (78 low-risk and 42 high-risk of malignancy) were manually segmented by a physician using a custom developed software in C++. From each nodule, 40 textural features were automatically calculated and were used with the SVM algorithm in the design of the image analysis system. Highest classification accuracy was 96.7%, misdiagnosing two high-risk and two low-risk thyroid nodules. The proposed system may be of value to physicians as a second opinion tool for avoiding unnecessary invasive procedures.

Algorithms↗

PubMed2004

Computer-based malignancy grading of astrocytomas employing a support vector machine classifier, the WHO grading system and the regular hematoxylin-eosin diagnostic staining procedure.

OBJECTIVE: To investigate and develop an automated technique for astrocytoma malignancy grading compatible with the clinical routine. STUDY DESIGN: One hundred forty biopsies of astrocytomas were collected from 2 hospitals. The degree of tumor malignancy was defined as low or high according to the World Health Organization grading system. From each biopsy, images were digitized and segmented to isolate nuclei from background tissue. Morphologic and textural nuclear features were quantified to encode tumor malignancy. Each case was represented by a 40-dimensional feature vector. An exhaustive search procedure in feature space was utilized to determine the best feature combination that resulted in the smallest classification error. Low and high grade tumors were discriminated using support vector machines (SVMs). To evaluate the system performance, all available data were split randomly into training and test sets. RESULTS: The best vector combination consisted of 3 textural and 2 morphologic features. Low and high grade cases were discriminated with an accuracy of 90.7% and 88.9%, respectively, using an SVM classifier with polynomial kernel of degree 2. CONCLUSION: The proposed methodology was based on standards that are common in daily clinical practice and might be used in parallel with conventional grading as a second-opinion tool to reduce subjectivity in the classification of astrocytomas.

Artificial Intelligence↗

PubMed2004

Automated segmentation of routinely hematoxylin-eosin-stained microscopic images by combining support vector machine clustering and active contour models.

OBJECTIVE: To develop a method for the automated segmentation of images of routinely hematoxylin-eosin (H-E)-stained microscopic sections to guarantee correct results in computer-assisted microscopy. STUDY DESIGN: Clinical material was composed 50 H-E-stained biopsies of astrocytomas and 50 H-E-stained biopsies of urinary bladder cancer. The basic idea was to use a support vector machine clustering (SVMC) algorithm to provide gross segmentation of regions holding nuclei and subsequently to refine nuclear boundary detection with active contours. The initialization coordinates of the active contour model were defined using a SVMC pixel-based classification algorithm that discriminated nuclear regions from the surrounding tissue. Starting from the boundaries of these regions, the snake fired and propagated until converging to nuclear boundaries. RESULTS: The method was validated for 2 different types of H-E-stained images. Results were evaluated by 2 histopathologists. On average, 94% of nuclei were correctly delineated. CONCLUSION: The proposed algorithm could be of value in computer-based systems for automated interpretation of microscopic images.

Algorithms↗

PubMedDate not supplied

Automated diagnosis of brain tumours astrocytomas using probabilistic neural network clustering and support vector machines.

A computer-aided diagnosis system was developed for assisting brain astrocytomas malignancy grading. Microscopy images from 140 astrocytic biopsies were digitized and cell nuclei were automatically segmented using a Probabilistic Neural Network pixel-based clustering algorithm. A decision tree classification scheme was constructed to discriminate low, intermediate and high-grade tumours by analyzing nuclear features extracted from segmented nuclei with a Support Vector Machine classifier. Nuclei were segmented with an average accuracy of 86.5%. Low, intermediate, and high-grade tumours were identified with 95%, 88.3%, and 91% accuracies respectively. The proposed algorithm could be used as a second opinion tool for the histopathologists.

Algorithms↗