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Dmitry Shorokhov

Publications and source records attributed to Dmitry Shorokhov.

4 recordsLinked to original sources

Ultrafast electron diffraction: dynamical structures on complex energy landscapes.

In this contribution, we report studies in ultrafast electron diffraction (UED), with the aim of exploring new directions. The main focus is on the determination of complex structures and their dynamics with spatial and temporal resolutions sufficient to give an atomic-scale picture for the evolution in chemical or biological change. We also provide the theoretical framework for UED, and compare the experimental findings of UED to those predicted by density functional and charge density calculations. Selected applications are given in order to highlight phenomena related to concepts such as bifurcation of trajectories in dynamics, far-from-equilibrium coherent structures, and conformational robustness in biological structures. For the former two cases, we consider chemical systems, and, for the latter, we examine proteins of 200 atoms (angiotensin I) or more.

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Valence shell charge concentrations at pentacoordinate d0 transition-metal centers: non-VSEPR structures of Me2NbCl3 and Me3NbCl2.

The molecular structures of the monomeric, pentacoordinated methylchloroniobium(IV) compounds Me3NbCl2 and Me2NbCl3 have been determined by gas electron diffraction (GED) and density functional theory (DFT) calculations, and, for Me3NbCl2, by single crystal X-ray diffraction. Each of the molecules is found to have a heavy-atom skeleton in the form of a trigonal bipyramid (TBP) with Cl atoms in the axial positions, in accord with their vibrational spectra. The TBP is somewhat distorted in the case of Me2NbCl3 with the two axial Nb--Cl bonds bent away from the equatorial, slightly shorter Nb--Cl bond. In the case of Me3NbCl2, moreover, the X-ray model suggests structural distortions away from the idealized C3h geometry, in line with the results of quantum chemical calculations. Structure optimizations by DFT calculations and least-squares refinement to the GED data yield the following structural parameters (calcd/exptl; eq=equatorial; ax=axial; distances in A, angles in degrees; average values in brackets): Me3NbCl2, in C(3v) symmetry, Nb--Cl 2.370/2.319(3), Nb--C 2.173/2.152(4), C--H 1.096/1.124(5), angle-spherical NbCH 109.3/105.2(8), angle-spherical ClNbC 92.2/93.3(2), angle-spherical CNbC 119.9/119.7(1); Me2NbCl3, in C(2v) symmetry, Nb--Cl(ax) 2.361/2.304(5), Nb--Cl(eq) 2.321/2.288(9), Nb--C 2.180/2.135(9), C--H 1.094/1.12(1), angle-spherical Cl(ax)NbCl(eq) 98.5/96.5(6), angle-spherical CNbC 121.0/114(2), angle-spherical NbCH 108.9/109(2). The electronic structures of Me2NbCl3 and Me3NbC(2 have been explored by rigorous analysis of both the wavefunction and the topology of the electron density, employing DFT calculations. Hence the structures of these compounds are shown to reflect repulsion between the Nb--C and Nb--Cl bonding electron density and charge concentrations induced by the methyl ligands in the valence shell of the Nb atom and arising mainly from use of Nb(4d) functions in the Nb--C bonds.

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Valence charge concentrations, electron delocalization and beta-agostic bonding in d0 metal alkyl complexes.

In this paper we describe a range of model d(0) metal ethyl compounds and related complexes, studied by DFT calculations and high resolution X-ray diffraction. The concept of ligand-opposed charge concentrations (LOCCs) for d(0) metal complexes is extended to include both cis-and trans-ligand-induced charge concentrations (LICCs) at the metal, which arise as a natural consequence of covalent metal-ligand bond formation in transition metal alkyl complexes. The interplay between locally induced sites of increased Lewis acidity and an ethyl ligand is crucial to the development of a beta-agostic interaction in d(0) metal alkyl complexes, which is driven by delocalization of the M-C bonding electrons. Topological analysis of theoretical and experimental charge densities reveals LICCs at the metal atom, and indicates delocalization of the M-C valence electrons over the alkyl fragment, with depletion of the metal-directed charge concentration (CC) at the alpha-carbon atom, and a characteristic ellipticity profile for the C(alpha)-C(beta) bond. These ellipticity profiles and the magnitude of the CC values at C(alpha) and C(beta) provide experimentally observable criteria for assessing quantitatively the extent of delocalization, with excellent agreement between experiment and theory. Finally, a concept is proposed which promises systematic control of the extent of C-H activation in agostic complexes.

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Valence-shell charge concentrations and electron delocalization in alkyllithium complexes: negative hyperconjugation and agostic bonding.

In this paper we present the results of density functional theory (DFT) calculations on the ethyl ligand and some related organic moieties; we then proceed to consider a range of alkyllithium complexes studied by DFT calculations and high-resolution X-ray and neutron diffraction. Topological analysis of the charge density is used to follow changes in the electronic structure of the organic fragment. The charge concentrations (CCs) in the valence shell at the alpha and beta atoms reveal faithfully the delocalization of the lone pair at the Calpha atom or of the Li-C bonding electrons. Negative hyperconjugation is thus shown to arise from delocalization of the lone pair or the Li-C bonding electrons over the alkyl fragment, with depletion of the metal-directed charge concentration at Calpha, and characteristic ellipticity profiles for the bonds involved in hyperconjugative delocalization. In the case of so-called lithium agostic complexes, we show that close Li.H contacts are a consequence of this delocalization and further secondary interactions, with Li.H-C agostic interactions, playing only a minor role. The ellipticity profiles and the magnitude of the CCs at Calpha provide a quantitative measure of the extent of delocalization, and show excellent agreement between experiment and theory.

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