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Dongho Kim

Publications and source records attributed to Dongho Kim.

At least 37 records · Page 2Linked to original sources
PubMed2005

Single molecule spectroscopic investigation on conformational heterogeneity of directly linked zinc(II) porphyrin arrays.

We have comparatively investigated the photophysical properties of a series of meso-meso directly linked orthogonal porphyrin arrays (Zn, n = 1, 2, 3, 4, 6, 8, 9, 12, 16, 32, 48, 64, and 96) by ensemble average and single molecule fluorescence spectroscopy. In single molecule fluorescence study, we have recorded the fluorescence intensity trajectories of Zn arrays as the number of porphyrin molecules in the array increases. Up to Z8 in porphyrin arrays, each single array exhibits multiple stepwise photobleaching behaviors in fluorescence intensity trajectories, indicating that each porphyrin unit in the array acts as an individual fluorescent unit due to a maintenance of linear rigid structure of the array. On the other hand, porphyrin arrays longer than Z8 such as Z16, Z32, Z48, and Z64 show complicated photobleaching behaviors in fluorescence intensity trajectories. The origin of complex photobleaching behaviors is believed to be increasing nonradiative decay channels contributed by the enhanced structural nonlinearity in longer arrays. The fluorescence measurements of Zn arrays on single molecule level show a mismatch in the maximum fluorescence intensity level as compared to the solution measurements, which is attributable to the difference in local environment surrounding the porphyrin array. In this work, we have demonstrated the presence of conformational heterogeneity in longer porphyrin arrays by analyzing average survival times and fluorescence spectra of single arrays as the number of porphyrin molecules in the array increases. We believe that the fluorescence properties of porphyrin arrays on single molecule level will provide a platform for further applications as molecular photonic wires.

Journal Article↗
PubMed2005

Comparative photophysics of [26]- and [28]hexaphyrins(1.1.1.1.1.1): large two-photon absorption cross section of aromatic [26]hexaphyrins(1.1.1.1.1.1).

We have explored the electronic natures of representative expanded porphyrins, [26]- and [28]hexaphyrins, to investigate the interplay between the aromaticity and antiaromaticity that is brought by two electron oxidation/reduction processes. The excited singlet and triplet states of [26]hexaphyrin in solution exhibit lifetimes of 125 ps and 1.8 mus, respectively, as revealed by various time-resolved spectroscopic measurements. On the other hand, [28]hexaphyrin shows faster singlet and triplet lifetimes than those of [26]hexaphyrin, which is largely in accordance with the perturbation of aromaticity due to the pi electron formulation of [4n] in [28]hexaphyrins. The two-photon absorption cross-section values at 1200 nm for [26]hexaphyrins show ca. 9890 GM which is >10(2) larger than those of porphyrins. The reduced TPA values of 2600 and 810 GM of [28]hexaphyrin and perfluorinated [28]hexaphyrin, respectively, match well with their relatively short excited-state lifetimes. Overall, the enhanced excited-state lifetimes for various hexaphyrins go in line with the increased TPA cross-section values and the ring planarity.

Absorption↗
PubMed2005

Approaches for chemically synthesized siRNA and vector-mediated RNAi.

Successful applications of RNAi in mammalian cells depend upon effective knockdown of targeted transcripts and efficient intracellular delivery of either preformed si/shRNAs or vector expressed si/shRNAs. We have previously demonstrated that 27 base pair double stranded RNAs which are substrates for Dicer can be up to 100 times more potent than 21mer siRNAs. In this mini-review we elaborate upon the rationale and design strategies for creating Dicer substrate RNAs that provide enhanced knockdown of targeted RNAs and minimize the utilization of the sense strand as RNAi effectors. Expression of shRNAs or siRNAs in mammalian cells can be achieved via transcription from either Pol II or Pol III promoters. There are certain constrictions in designing such vectors, and these are described here. Additionally, we review strategies for inducible shRNA expression and the various viral vectors that can be used to transduce shRNA genes into a variety of cells and tissues. The overall goal of this mini-review is to provide an overview of available approaches for optimizing RNAi mediated down regulation of gene expression in mammalian cells via RNA interference. Although the primary focus is the use of RNAi mediated cleavage of targeted transcripts, it is highly probable that some of the approaches described herein will be applicable to RNAi mediated inhibition of translation and transcriptional gene silencing.

Animals↗
PubMed2005

Effect of conformational heterogeneity on excitation energy transfer efficiency in directly meso-meso linked Zn(II) porphyrin arrays.

We have investigated the overall excitation energy relaxation dynamics in linear porphyrin arrays as well as the energy transport phenomena by attaching an energy acceptor to one end of a linear porphyrin array by using steady state and time-resolved spectroscopic measurements. We have revealed that the solvation dynamics as well as the conformational dynamics contributes significantly to the energy relaxation processes of linear porphyrin arrays. Consequently, long porphyrin arrays no longer serve as good energy transmission elements in donor-acceptor linked systems due to conformational heterogeneities which provide the non-radiative deactivation channels as energy quenchers.

Journal Article↗
PubMed2005

Excitation-energy migration in self-assembled cyclic zinc(II)-porphyrin arrays: a close mimicry of a natural light-harvesting system.

The excitation-energy-hopping (EEH) times within two-dimensional cyclic zinc(II)-porphyrin arrays 5 and 6, which were prepared by intermolecular coordination and ring-closing metathesis reaction of olefins, were deduced by modeling the EEH process based on the anisotropy depolarization as well as the exciton-exciton annihilation dynamics. Assuming the number of energy-hopping sites N = 5 and 6, the two different experimental observables, that is, anisotropy depolarization and exciton-excition annihilation times, consistently give the EEH times of 8.0 +/- 0.5 and 5.3 +/- 0.6 ps through the 1,3-phenylene linkages of 5 and 6, respectively. Accordingly, the self-assembled cyclic porphyrin arrays have proven to be well-defined two-dimensional models for natural light-harvesting complexes.

Absorption↗
PubMed2005

Giant meso-meso-linked porphyrin arrays of micrometer molecular length and their fabrication.

On the basis of the Ag(I)-promoted coupling reaction of zinc(II)-5,15-bis(3,5-dioctyloxyphenyl)porphyrin Z1, chain elongation has been attempted by using a stepwise doubling approach, which provides Z2, Z4, Z8, Z16, Z32, Z64, Z128, Z256, Z384, and Z512. The porphyrin arrays up to Z128 are sufficiently soluble in CHCl3 and THF despite their very long molecular lengths and rodlike structures, while the arrays over Z128 show a significant drop in solubility and stability. The discrete porphyrin arrays thus isolated were characterized by means of (1)H NMR spectroscopy, matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) mass spectrometry, UV/Vis spectroscopy, gel-permeation chromatography (GPC), cyclic voltammetry (CV), single-crystal X-ray crystallography, scanning tunneling microscopy (STM), and atomic force microscopy (AFM). Contrary to expected linear conformations of the arrays Z n (where n is the number of porphyrins), the single molecular images of Z128, Z256, and Z512 revealed largely bent structures; this finding indicates the substantial conformational flexibility of Z n. We also exploited an effective synthetic route by means of which Z n can be fabricated with a thiol-protected aryl group to provide Z n S(2) through Z n Br(2), by bromination with N-bromosuccinimide and subsequent Pd-catalyzed Suzuki-Miyaura arylation. Finally, the reaction of Z256 provided Z512, Z768, and Z1024. Collectively, this work provides an important milestone in the preparation of sub-microscale discrete organic molecules and the fabrication of molecular-based materials, hence significantly contributing to device applications.

Journal Article↗
PubMed2005

Excitation energy migration in a dodecameric porphyrin wheel.

Intramolecular excitation energy hopping (EEH) time within a dodecameric porphyrin wheel C6ZA, in which six meso-meso linked zinc(II) diporphyrin (Z2) subunits are bridged by 1,3-phenylene spacers, is deduced by a Förster energy hopping model based on S(1)-S(1) exciton-exciton annihilation and anisotropy depolarization. Under the assumption that the energy hopping sites are six Z2 subunits, two different observables (e.g., exciton-exciton annihilation and anisotropy depolarization times) consistently give the EEH time of 4.0 +/- 0.4 ps via 1,3-phenylene spacer of C6ZA, which is faster than 9.4 ps of linear 2Z2 (1,3-phenylene-linked zinc(II) tetraporphyrin). As a consequence, C6ZA serves as a well-defined two-dimensional model for a light-harvesting complex.

Journal Article↗
PubMed2005

Large two-photon absorption (TPA) cross-section of directly linked fused diporphyrins.

The excited state dynamics and two-photon absorption properties of four novel triply linked porphyrin dimers in toluene have been investigated. The fused porphyrin dimers exhibit extremely increased two-photon absorption cross-section values (12,000-15,000 GM) compared with porphyrin monomers owing to much enhanced pi-electron delocalization throughout the porphyrin dimer ring.

Journal Article↗
PubMed2005

Unusually high performance photovoltaic cell based on a [60]fullerene metal cluster-porphyrin dyad SAM on an ITO electrode.

A self-assembled monolayer (SAM) of a C60-triosmium cluster complex Os3(CO)7(CNR)(CNR')(mu3-eta2:eta2:eta2-C60) (ZnP-C60; R = (CH2)3Si(OEt)3, R' = ZnP) on an ITO surface exhibits ideal electrochemical responses as well as remarkable enhancement of the photocurrent generation. The diazabicyclooctane (DABCO) binding (ZnP)-C60/ITO/AsA/Pt cell shows the highest photocurrent generation quantum yield (19.5%) ever reported for the molecular photovoltaic cells based on the covalently linked donor-acceptor dyad structures. The high efficiency in photocurrent generation is ascribed to an efficient electron transfer from photoexcited porphyrin to fullerene, revealed by fluorescence lifetime measurements and transient absorption decay profiles. These results provide valuable information on the new strategy for the construction of molecular photonic devices and artificial photosynthetic systems on ITO electrodes.

Journal Article↗
PubMed2005

Photovoltaic cells using composite nanoclusters of porphyrins and fullerenes with gold nanoparticles.

Novel organic solar cells have been prepared using quaternary self-organization of porphyrin (donor) and fullerene (acceptor) units by clusterization with gold nanoparticles on nanostructured SnO2 electrodes. First, porphyrin-alkanethiolate monolayer-protected gold nanoparticles (H2PCnMPC: n is the number of methylene groups in the spacer) are prepared (secondary organization) starting from the primary component (porphyrin-alkanethiol). These porphyrin-modified gold nanoparticles form complexes with fullerene molecules (tertiary organization), and they are clusterized in acetonitrile/toluene mixed solvent (quaternary organization). The highly colored composite clusters can then be assembled as three-dimensional arrays onto nanostructured SnO2 films to afford the OTE/SnO2/(H2PCnMPC+C60)m electrode using an electrophoretic deposition method. The film of the composite clusters with gold nanoparticle exhibits an incident photon-to-photocurrent efficiency (IPCE) as high as 54% and broad photocurrent action spectra (up to 1000 nm). The power conversion efficiency of the OTE/SnO2/(H2PC15MPC+C60)m composite electrode reaches as high as 1.5%, which is 45 times higher than that of the reference system consisting of the both single components of porphyrin and fullerene.

Journal Article↗
PubMed2005

Enhancement of light-energy conversion efficiency by multi-porphyrin arrays of porphyrin-peptide oligomers with fullerene clusters.

Organic photovoltaic cells using supramolecular complexes of porphyrin-peptide oligomers (porphyrin-functionalized alpha-polypeptides) with fullerene demonstrate remarkable enhancement in the photoelectrochemical performance as well as broader photoresponse in the visible and near-infrared regions by increasing the number of porphyrin units in alpha-polypeptide structures. A high power conversion efficiency (eta) of 1.3% and a maximum incident photon-to-photocurrent efficiency (IPCE) of 42% were attained using composite clusters of porphyrin-peptide octamer and fullerene. These results clearly show that the formation of a molecular assembly between fullerene and multi-porphyrin arrays with a polypeptide backbone controls the electron transfer efficiency in the supramolecular complex, which is essential for the light-energy conversion.

Electrochemistry↗
PubMed2005

Directly meso-meso linked porphyrin rings: synthesis, characterization, and efficient excitation energy hopping.

Directly meso-meso linked porphyrin rings CZ4, CZ6, and CZ8 that respectively comprise four, six, and eight porphyrins have been synthesized in a stepwise manner from a 5,10-diaryl zinc(II) porphyrin building block. Symmetric cyclic structures have been indicated by their very simple (1)H NMR spectra that exhibit only a single set of porphyrin and their absorption spectra that display a characteristic broad nonsplit Soret band around 460 nm. Energy minimized structures calculated at the B3LYP/6-31G* level indicate that a dihedral angle between neighboring porphyrins decreases in order of CZ6 > CZ8 > CZ4, which is consistent with the (1)H NMR data. Photophysical properties of these molecules have been examined by the steady-state absorption, fluorescence, fluorescence lifetime, fluorescence anisotropy decay, and transient absorption measurements. Both the pump-power dependence on the femtosecond transient absorption and the transient absorption anisotropy decay profiles are directly related with the excitation energy migration processes within the porphyrin rings, where the exciton-exciton annihilation time and the polarization anisotropy rise time are well described in terms of the Forster-type incoherent energy hopping model. Consequently, the excitation energy hopping rates have been estimated for CZ4 (119 +/- 2 fs)(-)(1), CZ6 (342 +/- 59 fs)(-)(1), and CZ8 (236 +/- 31 fs)(-)(1), which reflect the magnitude of the electronic coupling between the neighboring porphyrins. Overall, these porphyrin rings serve as a well-defined wheel-shaped light harvesting antenna model in light of very efficient excitation energy hopping along the ring.

Journal Article↗
PubMed2004

Porphyrin boxes constructed by homochiral self-sorting assembly: optical separation, exciton coupling, and efficient excitation energy migration.

meso-Pyridine-appended zinc(II) porphyrins Mn and their meso-meso-linked dimers Dn assemble spontaneously, in noncoordinating solvents such as CHCl3, into tetrameric porphyrin squares Sn and porphyrin boxes Bn, respectively. Interestingly, formation of Bn from Dn proceeds via homochiral self-sorting assembly, which has been verified by optical separations of B1 and B2. Optically pure enantiomers of B1 and B2 display strong Cotton effects in the CD spectra, which reflect the length of the pyridyl arm, thus providing evidence for the exciton coupling between the noncovalent neighboring porphyrin rings. Excitation energy migration processes within Bn have been investigated by steady-state and time-resolved spectroscopic methods in conjunction with polarization anisotropy measurements. Both the pump-power dependence on the femtosecond transient absorption and the transient absorption anisotropy decay profiles are directly associated with the excitation energy migration process within the Bn boxes, where the exciton-exciton annihilation time and the polarization anisotropy rise time are well described in terms of the Förster-type incoherent energy hopping model by assuming a number of hopping sites of N = 4 and an exciton coherence length of L = 2. Consequently, the excitation energy hopping rates between the zinc(II) diporphyrin units have been estimated for B1 (48 ps)(-1), B2 (98 +/- 3 ps)(-1), and B3 (361 +/- 6 ps)(-1). Overall, the self-assembled porphyrin boxes Bn serve as a well-defined three-dimensional model for the light-harvesting complex.

Biomimetic Materials↗
PubMed2004

Vectorial electron relay at ITO electrodes modified with self-assembled monolayers of ferrocene-porphyrin-fullerene triads and porphyrin-fullerene Dyads for molecular photovoltaic devices.

Systematic series of indium tin oxide (ITO) electrodes modified covalently with self-assembled monolayers (SAMs) of ferrocene-porphyrin-fullerene triads and porphyrin-fullerene dyads were designed to gain valuable insight into the development of molecular photovoltaic devices. The structures of SAMs on ITO have been investigated by UV/Vis absorption spectroscopy, atomic force microscopy, and cyclic voltammetry. The photoelectrochemical and photophysical (fluorescence lifetime and time-resolved transient absorption) properties were also determined. The highest quantum yield of photocurrent generation (11 %) among donor-acceptor linked systems which are covalently attached to the surface of ITO electrodes was achieved with SAMs of ferrocene-zinc porphyrin-fullerene linked triad on ITO electrodes. The quantum yields of photocurrent generation correlate well with the charge-separation efficiency and the lifetime of the charge-separated state of the porphyrin-fullerene linked systems in solution. These results provide valuable information for the construction of photonic molecular devices and artificial photosynthetic systems on ITO electrodes.

Journal Article↗
PubMed2004

Links between fatty acids and expression of UCP2 and UCP3 mRNAs.

Physiological and pathological states that are associated with elevated plasma fatty acids (FAs) increase uncoupling protein 2 (UCP2) mRNA in white adipose tissue and UCP3 mRNA in skeletal muscle and heart. A direct effect of unsaturated fatty acids from all classes has been shown in various cultured cells. There is evidence that FAs could induce expression of UCPs by acting as ligands for peroxisome proliferator-activated receptors, influencing the function of sterol responsive element binding protein or activating 5'-AMP-activated protein kinase. Oleic acid has been shown to stimulate the activity of the promoter regions of UCP2 and UCP3 genes and the FA responsive regions are beginning to be characterised.

Carrier Proteins↗