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Biomedical subjects

Easwaran Arunkumar

Publications and source records attributed to Easwaran Arunkumar.

7 recordsLinked to original sources
PubMed2006

Squaraine-derived rotaxanes: highly stable, fluorescent near-IR dyes.

Squaraines are fluorescent, near-IR dyes with promising photophysical properties for biomedical applications. A limitation with these dyes is their inherent reactivity with nucleophiles, which leads to loss of the chromophore. Another drawback is their tendency to form nonfluorescent aggregates in water. Both problems can be greatly attenuated by encapsulating the dye inside an amide-containing macrocycle. In other words, the squaraine becomes the thread component in a Leigh-type rotaxane, a permanently interlocked molecule. Two new rotaxanes are described: an analogue with four tri(ethyleneoxy) chains on the squaraine to enhance water solubility, and a rotaxane that has an encapsulating macrocycle with transposed carbonyl groups. An X-ray crystal structure of the latter rotaxane shows that the macrocycle provides only partial protection of the electrophilic cyclobutene core of the squaraine thread. The stabilities of each compound in various solvents, including serum, were compared with a commercially available cyanine dye. The squaraine rotaxane architecture is remarkably resistant to chemical and photochemical degradation, and likely to be very useful as a versatile fluorescent scaffold for constructing various types of highly stable, near-IR imaging probes.

Animals↗
PubMed2005

1H NMR spectral evidence for a specific host-guest complexation induced charge localization in squaraine dyes.

[reaction: see text]. Experimental support is provided for the charge localization in squaraines, a class of fundamentally and technologically important organic dyes, by (1)H NMR analysis through a host-guest complexation approach. Specific binding of Ca(2+) ions to the squaraine 2 with a podand sidearm resulted in a charge-localized structure 2a with dramatic shifts and resolution of the proton signals when compared to those of 2.

Calcium↗
PubMed2005

Squaraine-derived rotaxanes: sterically protected fluorescent near-IR dyes.

A squaraine dye with bulky end groups is employed as the thread component in two Leigh-type amide rotaxanes. The rotaxanes are synthesized in a simple two-step process. X-ray crystal structures of the rotaxanes show that the pyridyl-containing macrocycle is more rigid and wraps more tightly around the cyclobutene core of the squaraine thread compared to the isophthalamide-containing macrocycle. The rotaxanes exhibit photophysical properties that are similar to the precursor squaraine. The encapsulating macrocycle greatly increases the chemical stability of the squaraine thread and inhibits aggregation-induced broadening of its absorption spectrum. It should be possible to prepare squaraine-derived rotaxanes with improved properties for a wide range of photophysical, photochemical, and biomedical applications.

Crystallography, X-Ray↗
PubMed2005

Selective calcium ion sensing with a bichromophoric squaraine foldamer.

Several squaraine tethered bichromophoric podand systems 1a-d and a monochromophoric analogue 2 were prepared and characterized. Among these, the bichromophore, 1b, containing five oxygen atoms in the flexible podand moiety was found to specifically bind Ca(2+) in the presence of other metal ions such as K(+), Na(+), and Mg(2+). The selective binding of Ca(2+) is clear from the absorption and emission spectral changes as well as by the visual color change of 1b from light-blue to an intense purple-blue. Benesi-Hildebrand and Job plots confirmed a 1:1 binding between 1b and Ca(2+). Signaling of the binding event is achieved by the cation-induced folding of the bichromophore and the resultant exciton coupling between the squaraine chromophores. The monochromophoric squaraine dye 2 failed to give optical signals upon Ca(2+) binding, due to the absence of exciton interaction in the bound complex. Titration of the folded complex 9 with EDTA released the metal ion from the complex, thereby regaining the original absorption and emission properties of the bichromophore. The squaraine foldamer 1b reported here is the first example of a selective chromogenic Ca(2+) sensor, which works on the principle of exciton interaction in the folded Ca(2+) complex of a bichromophore, the optical properties of which are similar to those of the "H"-type aggregates of analogous squaraine dyes.

Biosensing Techniques↗
PubMed2004

A controlled supramolecular approach toward cation-specific chemosensors: alkaline earth metal ion-driven exciton signaling in squaraine tethered podands.

Three different squaraine tethered bichromophoric podands 3a-c with one, two, and three oxygen atoms in the podand chain and an analogous monochromophore 4a were synthesized and characterized. Among these, the bichromophores 3a-c showed high selectivity toward alkaline earth metal cations, particularly to Mg(2+) and Ca(2+) ions, whereas they were optically silent toward alkali metal ions. From the absorption and emission changes as well as from the Job plots, it is established that Mg(2+) ions form 1:1 folded complexes with 3a and 3b whereas Ca(2+) ions prefer to form 1:2 sandwich dimers. However, 3c invariably forms weak 1:1 complexes with Mg(2+), Ca(2+), and Sr(2+) ions. The signal output in all of these cases was achieved by the formation of a sharp blue-shifted absorption and strong quenching of the emission of 3a-c. The signal transduction is achieved by the exciton interaction of the face-to-face stacked squaraine chromophores of the cation complex, which is a novel approach of specific cation sensing. The observed cation-induced changes in the optical properties are analogous to those of the "H" aggregates of squaraine dyes. Interestingly, a monochromophore 4a despite its binding, as evident from (1)H NMR studies, remained optically silent toward Mg(2+) and Ca(2+) ions. While the behavior of 4a toward Mg(2+) ion is understood, its optical silence toward Ca(2+) ion is rationalized to the preferential formation of a "Head-Tail-Tail-Head" arrangement in which exciton coupling is not possible. The present study is different from other known reports on chemosensors in the sense that cation-specific supramolecular host-guest complexation has been exploited for controlling chromophore interaction via cation-steered exciton coupling as the mode of signaling.

Journal Article↗
PubMed2003

Redox-switchable squaraines with extended conjugation.

[reaction: see text] The redox chemistry of pi-extended squaraines is investigated using cyclic voltammetry, in-situ spectroelectrochemistry and quantum chemical calculations. Squaraine 1 is reversibly oxidized to the radical cation and dication whereas reduction shows limited electrochemical but fully chemical reversibility. The radical cation of 1 reveals absorption bands at 1000 nm and a "two-band feature" at 1600 nm. Their implications on the intramolecular electron transfer are discussed.

Journal Article↗