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Biomedical subjects

Eiji Yashima

Publications and source records attributed to Eiji Yashima.

At least 19 recordsLinked to original sources

Supramolecular control of unwinding and rewinding of a double helix of oligoresorcinol using cyclodextrin/adamantane system.

The double helix of the oligoresorcinol nonamer formed in water was unwound by beta-cyclodextrin (beta-CD), and the resulting single strands of the nonamer threaded the beta-CD to form a twisted [3]-pseudorotaxane with a controlled helicity. Upon the addition of an adamantane, the single strand of the oligoresorcinol nonamer was expelled out of the beta-CD wheels, thus regenerating the double helix. This supramolecularly controlled, reversible unwinding and rewinding of the double helix is unique and can be readily monitored by spectroscopic techniques.

Adamantane↗

Visualization of RecA filaments and DNA by fluorescence microscopy.

We have developed two experimental methods for observing Escherichia coli RecA-DNA filament under a fluorescence microscope. First, RecA-DNA filaments were visualized by immunofluorescence staining with anti-RecA monoclonal antibody. Although the detailed filament structures below submicron scale were unable to be measured accurately due to optical resolution limit, this method has an advantage to analyse a large number of RecA-DNA filaments in a single experiment. Thus, it provides a reliable statistical distribution of the filament morphology. Moreover, not only RecA filament, but also naked DNA region was visualized separately in combination with immunofluorescence staining using anti-DNA monoclonal antibody. Second, by using cysteine derivative RecA protein, RecA-DNA filament was directly labelled by fluorescent reagent, and was able to observe directly under a fluorescence microscope with its enzymatic activity maintained. We showed that the RecA-DNA filament disassembled in the direction from 5' to 3' of ssDNA as dATP hydrolysis proceeded.

DNA↗

Nanosphere and nanonetwork formations of [60]fullerene-end-capped stereoregular poly(methyl methacrylate)s through stereocomplex formation combined with self-assembly of the fullerenes.

We report a novel and versatile method for constructing a supramolecular nanosphere and nanonetwork based on isotactic and syndiotactic C60-end-capped poly(methyl methacrylate)s (it- and st-PMMA-C60's) through their stereocomplex formation combined with self-assembly of the terminal C60. The stereoregular PMMA-C60's with a precisely controlled structure including molecular weight, its distribution, tacticity, and the chain-end structure were synthesized by the stereospecific anionic living polymerizations of methyl methacrylate followed by end-capping with C60, and their structures were proven by size exclusion chromatography, NMR, UV-vis, and MALDI-TOF-MS analyses. The stereoregular PMMA-C60's self-assembled to form a core-shell aggregate with C60 as the core and the PMMA chains as the shell in H2O/CH3CN (1/9, v/v) due to the solvophobic interaction of the C60 units. These it- and st-PMMA-C60 aggregates further supramolecularly assembled through iterative stereocomplex formation into nanonetworks in which the self-assembled C60 clusters were robustly connected with two- and three-dimensional arrangements. In addition, when the it- and st-PMMA-C60's were simultaneously mixed, self-assembly of the C60 units and stereocomplex formation of the it- and st-PMMA chains took place at once, resulting in the formation of uniformly sized spherical nanoparticles with resistance to heat. Similar nanonetwork architectures can be produced using it-PMMA-C60 clusters and st-PMMA prepolymers as the binder.

Journal Article↗

Switching of macromolecular helicity of optically active poly(phenylacetylene)s bearing cyclodextrin pendants induced by various external stimuli.

A series of novel phenylacetylenes bearing optically active cyclodextrin (CyD) residues such as alpha-, beta-, and gamma-CyD and permethylated beta-CyD residues as the pendant groups was synthesized and polymerized with a rhodium catalyst to give highly cis-transoidal poly(phenylacetylene)s, poly-1alpha, poly-2beta, poly-3gamma, and poly-2beta-Me, respectively. The polymers exhibited an induced circular dichroism (CD) in the UV-visible region of the polymer backbones, resulting from the prevailing one-handed helical conformations. The Cotton effect signs were inverted in response to external chiral and achiral stimuli, such as temperature, solvent, and interactions with chiral or achiral guest molecules. The inversion of the Cotton effect signs was accompanied by a color change due to a conformational change, such as inversion of the helicity of the polymer backbones with a different twist angle of the conjugated double bonds, that was readily visible with the naked eye and could be quantified by absorption and CD spectroscopies. The dynamic helical conformations of poly-2beta showing opposite Cotton effect signs in different solvents could be further fixed by intramolecular cross-linking between the hydroxy groups of the neighboring beta-CyD units in each solvent. The cross-link between the pendant CyD units suppressed the inversion of the helicity; therefore, the cross-linked poly-2betas showed no Cotton effect inversion, although the polymer backbones were still flexible enough to alter their helical pitch with the same handedness, resulting in a color change depending on the degree of intramolecular cross-linking.

Journal Article↗

Double helix-to-double helix transformation, using platinum(II) acetylide complexes as surrogate linkers.

We describe novel optically active double helices consisting of complementary strands stabilized by amidinium-carboxylate salt bridges. The m-terphenyl groups of each strand are joined by trans-Pt(II) acetylide complexes with pendant PPh(3) ligands as the surrogate linker, which converts to cis counterparts by a ligand exchange reaction with cis-1,2-bis(diphenylphosphino)ethylene, resulting in the formation of double helices with different structures. Subsequent iodine-promoted reductive elimination on the Pt(II) atoms generates the fully organic, enantiomerically pure double helices. [structure: see text]

Journal Article↗

Oligoresorcinols fold into double helices in water.

We report the first double helices with a controlled helicity in water based on oligoresorcinols as a new, simplest water-soluble structural motif. The molecular strands of the oligoresorcinols self-assemble into double helices with the aid of aromatic interactions in water as characterized by 1H NMR and absorption spectroscopies together with the X-ray crystallographic study of the pentamer. The double helix formation is sensitive to the chain length, solvent composition, and temperature. Moreover, a bias in the screw sense of the double helices was achieved by covalently attaching chiral substituents to both ends of the molecular strands.

Magnetic Resonance Spectroscopy↗

Construction of double-stranded metallosupramolecular polymers with a controlled helicity by combination of salt bridges and metal coordination.

We describe the construction of the first double-stranded metallosupramolecular helical polymers. We designed and synthesized a supramolecular duplex comprised of complementary m-terphenyl-based strands bearing a chiral amidine or achiral carboxylic acid together with two pyridine groups at the four ends. Supramolecular polymerization of the duplex with cis-PtPh2(DMSO)2 in 1,1,2,2-tetrachloroethane produced the double-stranded metallosupramolecular polymer with a controlled helicity of which the two complementary metallostrands are intertwined through the amidinium-carboxylate salt bridges. The structures and hydrodynamic dimensions of the metallosupramolecular polymers were characterized by 1H NMR, diffusion-ordered NMR, dynamic light scattering, absorption, and CD measurements. The polymeric structure was also visualized by atomic force microscopy.

Chemistry, Organic↗

Two-dimensional surface chirality control by solvent-induced helicity inversion of a helical polyacetylene on graphite.

We report the direct evidence for the macromolecular helicity inversion of a helical poly(phenylacetylene) bearing l- or d-alanine pendants with a long alkyl chain in different solvents by atomic force microscopy observations of the diastereomeric helical structures. The diastereomeric helical poly(phenylacetylene)s induced in polar and nonpolar solvents self-assembled into ordered, two-dimensional helix bundles with controlled molecular packing, helical pitch, and handedness on graphite upon exposure of each solvent. The macromolecular helicity deposited on graphite from a polar solvent further inverted to the opposite handedness by exposure to a specific nonpolar solvent, and these changes in the surface chirality based on the inversion of helicity could be visualized by atomic force microscopy with molecular resolution, and the results were quantified by X-ray diffraction of the oriented liquid crystalline, diastereomeric helical polymer films.

Journal Article↗

Helix-sense controlled polymerization of a single phenyl isocyanide enantiomer leading to diastereomeric helical polyisocyanides with opposite helix-sense and cholesteric liquid crystals with opposite twist-sense.

We report the unprecedented helix-sense controlled polymerization of enantiomerically pure phenyl isocyanides bearing an l- or d-alanine pendant with a long alkyl chain. The polymerization with an achiral nickel catalyst diastereoselectively proceeds, resulting in either a right- or left-handed helical polymer, whose helix-sense can be controlled by the polymerization solvent and temperature. Both the diastereomeric right- and left-handed helical polymers further self-assemble into lyotropic cholesteric liquid crystals with opposite twist-senses. Consequently, the macromolecular helicity and mesoscopic, supramolecular cholesteric twist can be controlled by the molecular chirality of the pendant of a single enantiomeric phenyl isocyanide through the polymerization under either kinetic or thermodynamic control assisted by hydrogen bonds. High-resolution atomic force microscopy revealed their helical conformations and enabled the determination of the helical sense.

Alanine↗

Detection of the chirality of C alpha-methylated alpha-amino acids with a dynamic helical poly(phenylacetylene) bearing aza-18-crown-6 ether pendants.

A stereoregular poly(phenylacetylene) bearing the aza-18-crown-6 ether pendants (poly-1) was found to form a predominantly one-handed helix upon complexation with optically active C(alpha)-methylated alpha-amino acids and their amide derivatives including typical meteoritic C(alpha)-methylated alpha-amino acids such as C(alpha)-methyl norvaline and C(alpha)-methyl valine. The complexes exhibited an induced circular dichroism (ICD) in the UV-visible region of the polymer backbone. Therefore, poly-1 can be used as a novel probe for detection of the chirality of C(alpha)-methylated alpha-amino acids. The effect of the enantiomeric excess (ee) of C(alpha)-methylated alpha-amino acids on the helicity induction in poly-1 was also investigated.

Acetylene↗

Sensing, threading, orienting, and cutting polymers with rigid-rod pores.

This short review describes synthetic pores that are made from rigid-rod molecules and can bind oligo-and polymers such as polyacetylenes, p-oligophenyls, terpenoids, polypeptides, polysaccharides, and oligonucleotides. The spotlight is on recent breakthroughs to image the longtime elusive pore-polymer host-guest complexes as single giant pseudorotaxanes.

Membrane Transport Modulators↗