Biomedical subjects

Emmanuel Fromager

Publications and source records attributed to Emmanuel Fromager.

6 recordsLinked to original sources

PubMed2005

On the accuracy of one-component pseudopotential spin-orbit calculations.

Improvements on current one-component extraction procedures of spin-orbit pseudopotentials are investigated for high accuracy computation of spin-orbit coupling energies. By means of the perturbation-theory formalism we first show that spin-orbit pseudopotentials, extracted at the one-component self-consistent-field level from a reference all-electron Dirac-Coulomb or Dirac-Coulomb-Breit calculation, include valence spin-orbit polarization and relaxation effects. As a consequence the use of these pseudopotentials in uncontracted spin-orbit configuration interaction (CI) with singles from the reference ground-state configuration gives rise to double counting of these spin-orbit effects. Two new methods that avoid such double counting have been investigated. The first, so-called "explicit" method, calculates explicitly, by means of a four-component spin-orbit CI, the double-counted spin-orbit effects and removes them from the pseudopotentials. Due to the nonadditivity of the core and valence spin-orbit effects as well as the so-called "pseudovariational collapse," this method is shown to be cumbersome. In the second "implicit" method the spin-orbit pseudopotential is extracted at the spin-orbit polarized and relaxed level by means of a single-excitation spin-orbit CI calculation. Atomic tests on iodine demonstrate the ability of the latter method to solve the double-counting problem.

Journal Article↗

PubMed2005

Atomic spin-orbit pseudopotential definition and its relation to the different relativistic approximations.

A critical analysis of usual shape-consistent spin-orbit pseudopotential extraction procedures is presented, considering the basic requirements of the atomic pseudopotentials. It is based on a perturbative analysis of both reference all-electron Dirac-Coulomb and pseudopotential calculations by means of the formalism developed by Lindgren and Morrisson. In the light of this analysis, we propose a new hybrid extraction of spin-orbit pseudopotentials, taking advantage of both shape-consistent and energy-consistent procedures. These new pseudopotentials are extracted and checked for the (2)P ground state of the halogens.

Journal Article↗

PubMed2005

Electron transfer in neptunyl(VI)-neptunyl(V) complexes in solution.

The rates and mechanisms of the electron self-exchange between Np(V) and Np(VI) in solution have been studied with quantum chemical methods and compared with previous results for the U(V)-U(VI) pair. Both outer-sphere and inner-sphere mechanisms have been investigated, the former for the aqua ions, the latter for binuclear complexes containing hydroxide, fluoride, and carbonate as bridging ligand. Solvent effects were calculated using the Marcus equation for the outer-sphere reactions and using a nonequilibrium PCM method for the inner-sphere reactions. The nonequilibrium PCM appeared to overestimate the solvent effect for the outer-sphere reactions. The calculated rate constant for the self-exchange reaction NpO2(+)(aq) + NpO2(2+)(aq) right harpoon over left harpoon NpO2(2+)(aq) + NpO2(+)(aq), at 25 degrees C is k = 67 M(-1) s(-1), in fair agreement with the observed rates 0.0063-15 M(-1) s(-1). The differences between the Np(V)-Np(VI) and the U(V)-U(VI) pairs are minor.

Journal Article↗

PubMed2005

Spin-orbit effects in electron transfer in neptunyl(VI)-neptunyl(V) complexes in solution.

The spin-orbit effects were investigated on the complexes involved in the electron self-exchange between Np(V) and Np(VI) in both the outer-sphere and inner-sphere mechanisms, the latter for binuclear complexes containing hydroxide, fluoride, and carbonate as bridging ligands. Results obtained with the variation-perturbation and the multireference single excitation spin-orbit CI calculations are compared. Both effects due to different relaxations of spinors within a multiplet (spin-orbit relaxation) and scalar (electrostatic) relaxation effects in the excited states are accounted for in the latter scheme. The results show that the scalar (electrostatic) relaxation is well described by the single-excitation spin-orbit CI, and that spin-orbit relaxation effects are small in the Np complexes, as in the lighter d-transition elements but in contrast to the main group elements.

Journal Article↗

PubMed2004

An analysis of core effects on shape-consistent pseudopotentials.

Large core (seven-valence electrons) shape-consistent averaged relativistic pseudopotentials (AREP) including core effects have been derived for the halogen series (Cl,Br,I,At). The influence of core effects on the spin-orbit splitting of the halogen and alkali atoms is clearly demonstrated within an all-electron four-component atomic reference calculation by means of a perturbation analysis. In particular, it is shown that AREPs extracted at the Dirac-Coulomb-Fock level, which already include spin-orbit polarization effects, give excellent results for atomic spectroscopy and equilibrium distances of halogen dimers. We also show that in our approach the core effects, included by configuration interaction using the numerical GRASP code, are transferred to the averaged orbital one-electron energy, defined in a perturbational way. This leads to a modification of the extracted AREPs by core effects, which is illustrated by calculations of the first atomic excited states using these AREPs. These results support the validity of including core effects directly in the AREPs extracted in a shape-consistent scheme. The transferability to the atomic excited states as well as to the molecular case is also verified.

Journal Article↗

PubMed2004

Electron transfer in uranyl(VI)-uranyl(V) complexes in solution.

The rates and mechanisms of the electron self-exchange between U(V) and U(VI) in solution have been studied with quantum chemical methods. Both outer-sphere and inner-sphere mechanisms have been investigated; the former for the aqua ions, the latter for binuclear complexes containing hydroxide, fluoride, and carbonate as bridging ligand. The calculated rate constant for the self-exchange reaction UO(2)(+)(aq) + UO(2)(2+)(aq) <=>UO(2)(2+)(aq) + UO(2)(+)(aq), at 25 degrees C, is k = 26 M(-1) s(-1). The lower limit of the rate of electron transfer in the inner-sphere complexes is estimated to be in the range 2 x 10(4) to 4 x 10(6) M(-1) s(-1), indicating that the rate for the overall exchange reaction may be determined by the rate of formation and dissociation of the binuclear complex. The activation energy for the outer-sphere model calculated from the Marcus model is nearly the same as that obtained by a direct calculation of the precursor- and transition-state energy. A simple model with one water ligand is shown to recover 60% of the reorganization energy. This finding is important because it indicates the possibility to carry out theoretical studies of electron-transfer reactions involving M(3+) and M(4+) actinide species that have eight or nine water ligands in the first coordination sphere.

Journal Article↗