Biomedical subjects

Eric Oldfield

Publications and source records attributed to Eric Oldfield.

58 records · Page 4Linked to original sources

PubMed2002

Carbon-13 NMR shielding in the twenty common amino acids: comparisons with experimental results in proteins.

We have used ab initio quantum chemical techniques to compute the (13)C(alpha) and (13)C(beta) shielding surfaces for the 14 amino acids not previously investigated (R. H. Havlin et al., J. Am. Chem. Soc. 1997, 119, 11951-11958) in their most popular conformations. The spans (Omega = sigma(33) - sigma(11)) of all the tensors reported here are large ( approximately 34 ppm) and there are only very minor differences between helical and sheet residues. This is in contrast to the previous report in which Val, Ile and Thr were reported to have large ( approximately 12 ppm) differences in Omega between helical and sheet geometries. Apparently, only the beta-branched (beta-disubstituted) amino acids have such large CSA span (Omega) differences; however, there are uniformly large differences in the solution-NMR-determined CSA (Deltasigma = sigma(orth) - sigma(par)) between helices and sheets in all amino acids considered. This effect is overwhelmingly due to a change in shielding tensor orientation. With the aid of such shielding tensor orientation information, we computed Deltasigma values for all of the amino acids in calmodulin/M13 and ubiquitin. For ubiquitin, we find only a 2.7 ppm rmsd between theory and experiment for Deltasigma over an approximately 45 ppm range, a 0.96 slope, and an R(2) = 0.94 value when using an average solution NMR structure. We also report C(beta) shielding tensor results for these same amino acids, which reflect the small isotropic chemical shift differences seen experimentally, together with similar C(beta) shielding tensor magnitudes and orientations. In addition, we describe the results of calculations of C(alpha), C(beta), C(gamma)1, C(gamma)2, and C(delta) shifts in the two isoleucine residues in bovine pancreatic trypsin inhibitor and the four isoleucines in a cytochrome c and demonstrate that the side chain chemical shifts are strongly influenced by chi(2) torsion angle effects. There is very good agreement between theory and experiment using either X-ray or average solution NMR structures. Overall, these results show that both C(alpha) backbone chemical shift anisotropy results as well as backbone and side chain (13)C isotropic shifts can now be predicted with good accuracy by using quantum chemical methods, which should facilitate solution structure determination/refinement using such shielding tensor surface information.

Amino Acids↗

PubMed2002

An NMR investigation of CO tolerance in a Pt/Ru fuel cell catalyst.

We report the first combined application of solid-state electrochemical NMR (EC NMR), cyclic voltammetry (CV), and potentiostatic current generation to investigate the topic of the ruthenium promotion of MeOH electro-oxidation over nanoscale platinum catalysts. The CV and EC NMR results give evidence for two types of CO: CO on essentially pure Pt and CO on Pt/Ru islands. There is no NMR evidence for rapid exchange between the two CO populations. CO molecules on the primarily Pt domains behave much like CO on pure Pt, with there being little effect of Ru on the Knight shift or on Korringa relaxation. In sharp contrast, COs on Pt/Ru have highly shifted (13)C NMR resonances, much weaker Korringa relaxation, and, at higher temperatures, they undergo thermally activated surface diffusion. For CO on Pt, the correlation observed between the 2pi* Fermi level local density of states and the steady-state current suggests a role for Ru in weakening the Pt-CO bond, thereby increasing the CO oxidation rate (current). The combined EC NMR/electrochemistry approach thus provides new insights into the promotion of CO tolerance in Pt/Ru fuel cell catalysts, in addition to providing a novel route to investigating promotion in heterogeneous catalysis in general.

Journal Article↗

PubMed2002

In vivo activities of farnesyl pyrophosphate synthase inhibitors against Leishmania donovani and Toxoplasma gondii.

The in vivo activities of three bisphosphonates were determined against Leishmania donovani and Toxoplasma gondii. Alendronate was essentially inactive against both parasites. Pamidronate was active against L. donovani by intravenous administration. Risedronate had a 50% effective dosage of five 2.6-mg/kg of body weight intraperitoneal doses against L. donovani-infected mice but was less effective against T. gondii-infected mice.

Administration, Oral↗

PubMed2001

Chemical shifts in amino acids, peptides, and proteins: from quantum chemistry to drug design.

This chapter discusses recent progress in the investigation and use of (13)C, (15)N, and (19)F nuclear magnetic resonance (NMR) chemical shifts and chemical shift tensors in proteins and model systems primarily using quantum chemical (ab initio Hartree-Fock and density functional theory) techniques. Correlations between spectra and structure are made and the techniques applied to other spectroscopic and electrostatic properties as well, including hydrogen bonding, ligand binding to heme proteins, J-couplings, electric field gradients, and atoms-in-molecules theory, together with a brief review of the use of NMR chemical shifts in drug design.

Amino Acids↗