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F Maley

Publications and source records attributed to F Maley.

At least 109 records · Page 6Linked to original sources
PubMed1983

Factors affecting the oligomeric structure of yeast external invertase.

It has been assumed that yeast external invertase is a dimer, with each subunit composed of a 60-kDa polypeptide chain. We now present evidence that at its optimal pH of 5.0, the predominant form of external invertase is an octamer with an average size of 8 X 10(5) Da. During ultracentrifugation the octamer dissociated to lower molecular weight forms, including a hexamer, tetramer, and dimer. All forms of the enzyme were shown to possess identical specific activities and to contain a similar carbohydrate to protein ratio. Although the monomer subunits (1 X 10(5) Da) were heterogenous in carbohydrate content, each subunit possessed nine oligosaccharide chains. When stained for protein and enzyme activity following sodium dodecyl sulfate-polyacrylamide gel electrophoresis, only the oligomeric form of the enzyme appeared to be active. Thus, on partially inactivating invertase with 4 M guanidine hydrochloride both octamer and monomer were evident on the gels but only the former was active. Similarly, incubating at pH 2.5 in the presence of sodium dodecyl sulfate yielded only inactive monomer. The monomer, unlike the active oligomeric aggregate, was unable to hydrolyze sucrose after sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Consistent with the in vitro studies, freshly prepared yeast lysate was shown to contain the octameric species of external invertase as the major active form of this enzyme. From these studies and others which employed deglycosylated invertase, it is concluded that the carbohydrate component of external invertase contributes not only to stabilizing enzyme activity, but also to maintaining its oligomeric structure.

Extracellular Space↗
PubMed1983

Primary structure of the Escherichia coli thyA gene and its thymidylate synthase product.

The nucleotide sequence of a 1,163-base-pair fragment that encodes the entire thyA gene of Escherichia coli K-12 was determined. The strategy involved sequence determination of both DNA strands by using overlapping deletions that had been generated in vitro from the two ends of the fragment with BAL-31 nuclease. The amino-terminal sequence of thymidylate synthase (5,10-methylenetetrahydrofolate:dUMP C-methyltransferase, EC 2.1.1.45), the product of the thyA gene, located the 792-base-pair open reading frame, which codes for the 264 amino acid residues of this enzyme. The amino acid sequence deduced from the nucleotide data was confirmed to the extent of 40% by partial sequence analysis of the enzyme purified from extracts of the amplified cloned gene. Transcriptional and translational control areas were apparent in the regions flanking the structural gene. The 5-fluorodeoxyuridylate-binding residue of the active site was identified as cysteine-146. Comparison of the E. coli and Lactobacillus casei synthase sequences reveals consistent homology (62%) over extensive regions. This homology is particularly striking in a very hydrophobic region bordering cysteine-146. In the two enzymes, this region, which probably defines the active site, is 82% homologous. However, a dramatic difference between the two sequences is reflected by the surprising finding that a 51-amino-acid stretch, present midway through the L. casei sequence, is completely absent from the E. coli enzyme.

Amino Acid Sequence↗
PubMed1983

Characterization of the Escherichia coli thyA gene and its amplified thymidylate synthetase product.

The 7.8-kilobase HindIII insert in phage lambda NM589thyA [Borck, K., Beggs, J.D., Brammar, W.J., Hopkins, A.S. & Murray, N. (1976) Mol. Gen. Genet. 146, 199] was confirmed as originating from Escherichia coli by hybridization analysis and was shown to encode the thymidylate synthetase (5,-10-methylenetetrahydrofolate:dUMP C-methyltransferase EC 2.1.1.45) of E. coli K-12 by using biochemical, structural, and immunologic criteria. The 7.8-kilobase insert was reduced in size to a quasi-random population of DNA subfragments by partial digestion with the 4-base-pair recognition enzymes Alu I and Hae III. A clone containing a 1.1- to 1.2-kilobase fragment that encompassed the gene was obtained from this mixture by selecting for Thy+ recombinants. Fusion of this DNA fragment to the phage lambda rho L promoter in plasmid pKC30 revealed the direction of transcription of the thyA gene, and, in a phage lambda lysogen containing a thermolabile repressor, intracellular synthetase levels were increased about 700-fold. The enzyme was purified to homogeneity from this source by affinity chromatography, and some of its properties are described.

Cloning, Molecular↗
PubMed1982

Glycoprotein synthesis in yeast. Identification of Man8GlcNAc2 as an essential intermediate in oligosaccharide processing.

Synthesis of the N-linked oligosaccharides of Saccharomyces cerevisiae glycoproteins has been studied in vivo by labeling with [2-3H]mannose and gel filtration analysis of the products released by endoglycosidase H. Both small oligosaccharides, Man8-14GlcNAc, and larger products, Man greater than 20GlcNAc, were labeled. The kinetics of continuous and pulse-chase labeling demonstrated that Glc3Man9GlcNAc2, the initial product transferred to protein, was rapidly (t1/2 congruent to 3 min) trimmed to Man8GlcNAc2 and then more slowly (t1/2 = 10-20 min) elongated to larger oligosaccharides. No oligosaccharides smaller than Man8GlcNAc2 were evident with either labeling procedure. In confirmation of the trimming reaction observed in vivo, 3H-labeled Man9-N-acetylglucosaminitol from bovine thyroglobulin and [14C]Man9GlcNAc2 from yeast oligosaccharide-lipid were converted in vitro by broken yeast cells to 3H-labeled Man8-N-acetylglucosaminitol and [14C]Man8GlcNAc2. Man8GlcNAc and Man9GlcNAc from yeast invertase and from bovine thyroglobulin were purified by gel filtration and examined by high field 1H-NMR analysis. Invertase Man8GlcNAc (B) and Man9GlcNAc (C) were homogeneous compounds, which differed from the Man9GlcNAc (A) of thyroglobulin by the absence of a specific terminal alpha 1,2-linked mannose residue. The Man9GlcNAc of invertase (C) had an additional terminal alpha 1,6-linked mannose and appeared identical in structure with that isolated from yeast containing the mnn1 and mnn2 mutations (Cohen, R. E., Zhang, W.-j., and Ballou, C. E. (1982) J. Biol. Chem. 257, 5730-5737). It is concluded that Man8GlcNAc2, formed by removal of glucose and a single mannose from Glc3Man9GlcNAc2, is the ultimate product of trimming and the minimal precursor for elongation of the oligosaccharides on yeast glycoproteins. The results suggest that removal of a particular terminal alpha 1,2-linked mannose from Man9GlcNAc2 by a highly specific alpha-mannosidase exposes the nascent Man-alpha 1,6-Man backbone for elongation with additional alpha 1,6-linked mannose residues, according to the following scheme: (formula, see text).

Carbohydrate Conformation↗
PubMed1982

Studies on identifying the allosteric binding sites of deoxycytidylate deaminase.

Thymidine triphosphate, a negative regulator of deoxycytidylate deaminase, was found to bind covalently to this enzyme on exposure to UV light at 254 nM. The rate of half-maximal fixation was extremely rapid, occurring within 30 s and probably attaining a maximum of about 1 mol of dTTP fixed/mol of enzyme subunit. In contrast to the case of ribonucleotide reductase (Ericksson, S., Caras, I. W., and Martin, D. W., Jr. (1982) Proc. Natl. Acad. Sci. U. S. A. 79, 81-85) where the fixation of dTTP inactivated this enzyme, the activity of the deaminase was unaffected. The bound nucleotide could be released on exposure to UV 254 nm light in the presence of dCTP or dTTP but not dATP or dGTP. The enzyme-fixed nucleotide was found to remain with the larger of the two peptides released as a result of CNBr treatment of the labeled enzyme. Studies are in progress to define the location of this nucleotide, which will be aided greatly by our recent clarification of the complete amino acid sequence of T2-deoxycytidylate deaminase.

Binding Sites↗
PubMed1982

Allosteric transitions associated with the binding of substrate and effector ligands to T2 phage induced deoxycytidylate deaminase.

The binding characteristics of T2 phage induced deoxycytidylate deaminase were examined through the use of ultrafiltration and equilibrium dialysis. The positive effectors, 5-(hydroxymethyl)deoxycytidine 5'-triphosphate and deoxycytidine 5'-triphosphate, were bound in a highly cooperative manner, which is consistent with the allosteric effects promoted by these compounds. Their respective S0.5 values were 8 and 2 microM. A similar degree of cooperativity was associated with the binding of such competitive inhibitors of deoxycytidylate deaminase as dGMP, 4-N-hydroxydeoxycytidine 5'-monophosphate, and tetrahydrodeoxyuridylate. The negative effector, dTTP, also inhibited the binding of dCTP in a pH-dependent manner, which is consistent with its previously demonstrated inhibition of catalysis [Maley, G. F., Guarino, D. U., & Maley, F. (1972) J. Biol. Chem. 247, 931-939]. The binding of dTTP could be demonstrated only at low phosphate concentrations and did not appear to be cooperative. The number of binding sites for the allosteric ligands, substrate, and substrate inhibitors was shown to be six, which coincides with the number of enzyme subunits. It was established by CD difference spectroscopy that dCTP, at concentrations normally employed to demonstrate enzyme activation, effects a dramatic conformation transition in the deaminase, as indicated by a sharp decrease in ellipticity at about 280 nm. The nature of this response suggests that the microenvironment of some of the enzyme's tyrosyl residues had been perturbed by the presence of this allosteric nucleotide.

Circular Dichroism↗
PubMed1981

Revision of the structure for an endo-beta-N-acetylglucosaminidase H substrate using a novel modification of the Smith degradation.

(Man)5(GlcNAc)2Asn was shown in a previous study (Trimnble, R. B., Tarentino, A. L., Plummer, T. H., Jr., and Maley, F. (1978) J. Biol. Chem. 253, 4508-4511) to be hydrolyzed by alpha-mannosidase to Man alpha 1 leads to 6Man alpha 1 leads to 6(Man alpha 1 leads to 3)Man beta 1 leads to 4GlcNAc beta 2 leads to 4GlcNAc-Asn. The latter is the most effective substrate for endo-beta-N-acetylglucosaminidase H tested to date. By employing a new and highly sensitive modification of the Smith degradation, it is shown that this compound is in reality Man alpha 1 leads to 6(Man alpha 1 leads to 3)Man alpha 1 leads to 6Man beta 1 leads to 4GlcNAc beta 1eads to 4GlcNAc-Asn. The method entails the conversion of a glycosyl asparagine derivative to its corresponding dimethylaminonaphthyl sulfonyl analogue, which after periodate oxidation is treated directly with Dowex 50-H+ to eliminate the modified carbohydrate residues. The dansylated products, which are eluted from the resin with ammonium hydroxide, can be identified rapidly by thin layer chromatography.

Acetylglucosaminidase↗
PubMed1981

Ageing studies in rat liver. II. Patterns of cellular and cell-free protein synthesis from one to ten months of age.

Potential changes in liver protein biosynthesis were investigated in 1 to 10-month-old male Fischer F344 rats by isolation and translation of polysome-derived poly(A)-containing RNA and by incubation of isolated hepatocytes in Swim's S77 medium supplemented with [3H]leucine. Labeled protein products were analyzed by one- and two-dimensional polyacrylamide gel electrophoresis followed by fluorography. The protein profiles revealed that the translation products of poly(A)-containing RNA derived from the livers of 1 -months-old animals lacked a major 22000 dalton band which was present in comparable profiles from livers of older animals. In parallel experiments, gel profiles of products from cultured hepatocytes isolated from 1-month-old animals were missing an 18000 dalton band which was seen in preparations from older animals. With livers from rats between 2 and 10 months of age, however, no age-related changes in the pattern of protein biosynthesis were detected either in the products of poly(A)-containing RNA translated in vitro or in the cellular and secreted proteins of intact hepatocytes. Furthermore, the polysome content (A1(260)cm/g tissue) was constant between 1 and 10 months of age, providing a constant amount of tissue was processed. A procedure for maximizing the yield of polysomes is described. These results suggest that the decline in protein synthesis observed in rat liver and in cultured hepatocytes during the first year of life is not due to changes in mRNA content or the variety of specific products synthesized, but results primarily from an overall decrease in protein biosynthesis, probably at the level of peptide chain elongation.

Animals↗
PubMed1980

Effect of glucosylation of lipid intermediates on oligosaccharide transfer in solubilized microsomes from Saccharomyces cerevisiae.

Glc3Man9GlcNAc2-P-P-dolichol and Man9GlcNAc2-P-P-dolichol isolated from Saccharomyces cerevisiae are substrates for the N-glycosylation of endogenous proteins in Triton X-100-solubilized yeast microsomes. The solubilized oligosaccharide transferase requires Mn2+ for activity; neither Mg2+ nor Ca2+ is an effective substitute. The pH optimum of the transfer reaction is between 6.5 and 7.5. Unlike animal systems, which utilize glucosylated oligosaccharide-lipid to a much greater extent than the unglucosylated species as a donor in the transferase rection, yeast extracts transfer more than 70% of Glc3Man9GlcNAc2 and Man9GlcNAc2 from their respective oligosaccharide-lipids to proteins. However, the rate of N-glycosylation in vitro is approximately 25-fold faster with Glc3Man9GlcNAc2-P-P-dolichol than with Man9GlcNAc2-P-P-dolichol. The apparent Km value for the glucosylated species is 75 nM, while that for the unglucosylated glycolipid is 55 nM.

Cations, Divalent↗
PubMed1980

Characterization of large oligosaccharide-lipids synthesized in vitro by microsomes from Saccharomyces cerevisiae.

Conditions are described for optimizing the synthesis of large oligosaccharide-lipids in microsomal preparations from Saccharomyces cerevisiae. On incubating microsomes, with GDP-[14C]Man, the major product obtained was Man9GlcNAc2-P-P-dolichol, but when both GDP-[14C]Man and UDP-[3H]Glc were present in the incubation mixture about half of the Man9GlcNAc2 was elongated to Glc3Man9GlcNAc2-P-P-dolichol. Unlike particulate fractions from mammalian systems, little glucosylation of the yeast microsomal oligosaccharide-lipid was obtained when the concentration of UDP-Glc was less than 10 microM, but the synthesis of this product could be maximized by raising the concentration of UDP-Glc to 50 microM. Analysis of the yeast Man9GlcNAc2 species confirmed that 8 of the 9 mannose residues could be released with alpha-mannosidase, while the remaining mannosyl residue was in the core trisaccharide, Manbeta 1 leads to 4GlcNAc beta 1 leads to 4GlcNAc. Treatment of Glc3Man9GlcNAc2 with alpha-mannosidase released 5 of 9 mannose residues and yielded Glc3Man4GlcNAc2. This product appeared to be identical with that obtained in parallel experiments with double labeled oligosaccharide-lipid synthesized in oviduct microsomes. Streptomyces plicatus endo-beta-N-acetylglucosaminidase H (Endo-H) treatment of yeast microsomal glycoproteins that were labeled with sugar nucleotides established that 15% of the label was associated with N-linked oligosaccharides. The remaining labeled sugars were released with alkali, indicating that they were linked to serine or threonine. Based on the size and distribution of [3H]glucose and [14C]mannose in the Endo-H-released oligosaccharides, it was concluded that Glc3Man9GlcNAc2 was the primary species transferred to proteins in the yeast system.

Glycolipids↗
PubMed1980

Growth phase dependence of invertase mRNA levels in yeast.

Poly(A)-containing RNA from Saccharomyces cerevisiae was translated in the wheat germ protein-synthesizing system and yielded as one of its products a polypeptide which was identified as invertase. This characterization was based on the presence of a protein band at 60,000 daltons following immunoprecipitation with a specific invertase antibody, and the formation from this protein of staphylococcal V8 protease and cyanogen bromide peptides, which were similar in size to those from carbohydrate-depleted invertase. The observed increase in invertase activity from the early to mid logarithmic stage of cell growth was synchronous with the appearance of translatable invertase mRN in these cells. No translatable invertase mRNA, however, was detected in late logarithmic cells, although a constant level of invertase activity was present in the culture medium.

Cell-Free System↗