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Flemming Besenbacher

Publications and source records attributed to Flemming Besenbacher.

29 records · Page 2Linked to original sources
PubMed2005

Controlling the catalytic bond-breaking selectivity of Ni surfaces by step blocking.

The reactivity of catalytic surfaces is often dominated by very reactive low-coordinated atoms such as step-edge sites. However, very little knowledge exists concerning the influence of step edges on the selectivity in reactions involving multiple reaction pathways. Such detailed information could be very valuable in rational design of new catalysts with improved selectivity. Here we show, from an interplay between scanning tunnelling microscopy experiments and density functional theory calculations, that the activation of ethylene on Ni(111) follows the trend of higher reactivity for decomposition at step edges as compared with the higher-coordinated terrace sites. The step-edge effect is considerably more pronounced for the C-C bond breaking than for the C-H bond breaking, and thus steps play an important role in the bond-breaking selectivity. Furthermore, we demonstrate how the number of reactive step sites can be controlled by blocking the steps with Ag. This approach to nanoscale design of catalysts is exploited in the synthesis of a new high-surface-area AgNi alloy catalyst, which is tested in hydrogenolysis experiments.

Journal Article↗
PubMed2005

Cantilever sensor for nanomechanical detection of specific protein conformations.

A fast, label-free, and multiplexed method based on piezoresistive cantilevers is reported for the detection of specific protein conformations at the nanoscale level. The ligand-binding domain of the human oestrogen receptor (ERalpha-LBD) is used as the experimental model system, and ERalpha-LBD with or without oestradiol (E2) is detected using the conformation-specific peptides alpha/betaI (Ser-Ser-Asn-His-Gln-Ser-Ser-Arg-Leu-Ile-Glu-Leu-Leu-Ser-Arg, which recognizes E2-bound ER) and alpha/betaII (Ser-Ala-Pro-Arg-Ala-Thr-Ile-Ser-His-Tyr-Leu-Met-Gly-Gly, which recognizes E2-free ER). Target-specific signals are obtained in situ at protein concentrations of 2.5-20 nM. The in-build electrical readout of the piezoresistive cantilevers provides a convenient alternative to the conventional optical detection, and the presented method offers the possibility of detecting protein conformational changes using miniaturized microarrays.

Biosensing Techniques↗
PubMed2004

Lock-and-key effect in the surface diffusion of large organic molecules probed by STM.

A nanoscale understanding of the complex dynamics of large molecules at surfaces is essential for the bottom-up design of molecular nanostructures. Here we show that we can change the diffusion coefficient of the complex organic molecule known as Violet Lander (VL, C(108)H(104)) on Cu(110) by two orders of magnitude by using the STM at low temperatures to switch between two adsorption configurations that differ only in the molecular orientation with respect to the substrate lattice. From an interplay with molecular dynamics simulations, we interpret the results within a lock-and-key model similar to the one driving the recognition between biomolecules: the molecule (key) is immobilized only when its orientation is such that the molecular shape fits the atomic lattice of the surface (lock); otherwise the molecule is highly mobile.

Microscopy, Scanning Tunneling↗
PubMed2004

Role of the trans-activation response element in dimerization of HIV-1 RNA.

The HIV-1 genome consists of two identical RNA strands that are linked together through non-covalent interactions. A major determinant for efficient dimerization of the two RNA strands is the interaction between palindromic sequences in the dimerization initiation site. Here we use an interplay of bioinformatics, biochemistry, and atomic force microscopy to describe another conserved palindrome in the trans-activation response element (TAR) that functions as a strong dimerization site when transiently exposed to the viral nucleocapsid protein. In conjunction with the DIS interaction, the TAR dimerization induces the formation of a 65-nm higher-order circular structure in the dimeric HIV-1 RNA. Our results provide a molecular model for the role of TAR in packaging and reverse transcription of the viral genome. The unique structure of the TAR-TAR dimer renders it an intriguing therapeutic target for the treatment of HIV-1 infection.

5' Untranslated Regions↗
PubMed2004

Electron transfer-induced dynamics of oxygen molecules on the TiO2(110) surface.

Diffusion of oxygen molecules on transition metal oxide surfaces plays a vital role for the understanding of catalysis and photocatalysis on these materials. By means of time-resolved scanning tunneling microscopy, we provide evidence for a charge transfer-induced diffusion mechanism for O2 molecules adsorbed on a rutile TiO2(110) surface. The O2 hopping rate depended on the number of surface donors (oxygen vacancies), which determines the density of conduction band electrons. These results may have implications for the understanding of oxidation processes on metal oxides in general.

Journal Article↗
PubMed2003

Self-assembly of monodispersed, chiral nanoclusters of cysteine on the Au(110)-(1 x 2) surface.

The self-assembly of monodispersed supramolecular nanoclusters was observed by scanning tunneling microscopy (STM). The clusters form from the naturally occurring amino acid cysteine by vapor deposition onto the Au(110)-(1 x 2) surface under ultrahigh vacuum conditions. Enantiomerically pure l- and d-cysteine yields clusters with mirror-image STM signatures. Racemic ld-cysteine segregates into homochiral clusters, evidencing specific intermolecular interactions during the self-assembly process.

Cysteine↗
PubMed2002

Oxygen-mediated diffusion of oxygen vacancies on the TiO2(110) surface.

Defects such as oxygen vacancies play a crucial role in the surface properties of transition metal oxides. By means of time-resolved, high-resolution scanning tunneling microscopy, we unraveled an adsorbate-mediated diffusion mechanism of oxygen vacancies on rutile TiO2(110). Adsorbed oxygen molecules mediate vacancy diffusion through the loss of an oxygen atom to a vacancy and the sequential capture of an oxygen atom from a neighboring bridging oxygen row, leading to an anisotropic oxygen vacancy diffusion pathway perpendicular to the bridging oxygen rows.

Journal Article↗
PubMed2002

Chiral recognition in dimerization of adsorbed cysteine observed by scanning tunnelling microscopy.

Stereochemistry plays a central role in controlling molecular recognition and interaction: the chemical and biological properties of molecules depend not only on the nature of their constituent atoms but also on how these atoms are positioned in space. Chiral specificity is consequently fundamental in chemical biology and pharmacology and has accordingly been widely studied. Advances in scanning probe microscopies now make it possible to probe chiral phenomena at surfaces at the molecular level. These methods have been used to determine the chirality of adsorbed molecules, and to provide direct evidence for chiral discrimination in molecular interactions and the spontaneous resolution of adsorbates into extended enantiomerically pure overlayers. Here we report scanning tunnelling microscopy studies of cysteine adsorbed to a (110) gold surface, which show that molecular pairs formed from a racemic mixture of this naturally occurring amino acid are exclusively homochiral, and that their binding to the gold surface is associated with local surface restructuring. Density-functional theory calculations indicate that the chiral specificity of the dimer formation process is driven by the optimization of three bonds on each cysteine molecule. These findings thus provide a clear molecular-level illustration of the well known three-point contact model for chiral recognition in a simple bimolecular system.

Cysteine↗