Biomedical subjects

Frank Neese

Publications and source records attributed to Frank Neese.

64 records · Page 4Linked to original sources

PubMed2002

Electronic structure and reactivity of low-spin Fe(III)-hydroperoxo complexes: comparison to activated bleomycin.

The spectroscopic properties, electronic structure, and reactivity of the low-spin Fe(III)-hydroperoxo complex [Fe(N4Py)(OOH)](2+) (1, N4Py = N,N-bis(2-pyridylmethyl)-N-bis(2-pyridyl)methylamine) are investigated in comparison to those of activated bleomycin (ABLM). Complex 1 is characterized by Raman features at 632 (Fe-O stretch) and 790 cm(-1) (O-O stretch), corresponding to a strong Fe-O bond (force constant 3.62 mdyn/A) and a weak O-O bond (3.05 mdyn/A). The UV-vis spectrum of 1 shows a broad absorption band around 550 nm that is assigned to a charge-transfer transition from the hydroperoxo to a t(2g) d orbital of Fe(III) using resonance Raman and MCD spectroscopies and density functional (DFT) calculations. Compared to low-spin [Fe(TPA)(OH(x))(OO(t)Bu)](x+)(TPA = tris(2-pyridylmethyl)amine, x = 1 or 2), an overall similar Fe-OOR bonding results for low-spin Fe(III)-alkylperoxo and -hydroperoxo species. Correspondingly, both systems show similar reactivities and undergo homolytic cleavage of the O-O bond. From the DFT calculations, this reaction is more endothermic for 1 due to the reduced stabilization of the .OH radical compared to .O(t)Bu and the absence of the hydroxo ligand that helps to stabilize the resulting Fe(IV)=O species. In contrast, ABLM has a somewhat different electronic structure where no pi donor bond between the hydroperoxo ligand and iron(III) is present [Neese, F.; Zaleski, J. M.; Loeb-Zaleski, K.; Solomon, E. I. J. Am. Chem. Soc. 2000, 122, 11703]. Possible reaction pathways for ABLM are discussed in relation to known experimental results.

Antibiotics, Antineoplastic↗

PubMed2002

o-Iminobenzosemiquinonato(1-) and o-amidophenolato(2-) complexes of palladium(II) and platinum(II): a combined experimental and density functional theoretical study.

From the reaction mixture of [M(II)(bpy)Cl(2)], the ligand 2-anilino-4,6-di-tert-butylphenol, H[L(AP)], and 2 equiv of a base (NaOCH(3)) in CH(3)CN under anaerobic conditions were obtained the blue-green neutral complexes [M(II)(L(AP)-H)(bpy)] (M = Pd (1), Pt (2)). (L(AP)-H)(2)(-) represents the o-amidophenolato dianion, (L(AP))(1)(-) is the o-aminophenolate(1-), (L(ISQ))(1)(-) is its one-electron-oxidized, pi-radical o-iminobenzosemiquinonate(1-), and (L(IBQ))(0) is the neutral quinone. Complexes 1 and 2 can be oxidized by ferrocenium hexafluorophosphate, yielding the paramagnetic salts [M(II)(L(ISQ))(bpy)]PF(6) (S = (1)/(2)) (M = Pd (1a), Pt (2a)). The reaction of PtCl(2), 2 equiv of H[L(AP)], and 4 equiv of base in CH(3)CN in the presence of air yields diamagnetic [Pt(L(ISQ))(2)] (3), which is shown to possess an electronic structure that is best described as a singlet diradical. Complexes 1, 1a, 2, 2a, and 3 have been structurally characterized by X-ray crystallography at 100 K. It is clearly established that O,N-coordinated (L(AP)-H)(2)(-) ligands have a distinctly different structure than the corresponding O,N-coordinated (L(ISQ))(1)(-) radicals. It is therefore possible to unambiguously assign the protonation and oxidation level of o-aminophenol derived ligands in coordination compounds. All complexes have been investigated by cyclic voltammetry, spectroelectrochemistry, EPR, and UV-vis spectroscopy. Complexes 1 and 2 can be reversibly oxidized to the [M(II)(L(ISQ))(bpy)](+) and [M(II)(L(IBQ))(pby)](2+) mono- and dications, respectively, and reduced to the [M(L(AP)-H)(bpy(*))](-) anion, where (bpy(*))(1)(-) is the radical anion of 2,2'-bipyridine. Complex 3 exhibits four reversible one-electron-transfer waves (two oxidations and two reductions) which are all shown to be ligand centered. The EPR spectra of the one-electron-reduced species [Pt(L(AP)-H)(L(ISQ))](-) (S = (1)/(2)) and of the one-electron-oxidized species [Pt(L(ISQ))(L(IBQ))](+) (S = (1)/(2)) in CH(2)Cl(2) solutions have been recorded. To gain a better understanding of the electronic structure of 3 and its monooxidized and reduced forms, relativistic DFT calculations have been carried out. Magnetic coupling parameters and hyperfine couplings were calculated and found to be in very good agreement with experiment. It is shown that both the one-electron oxidation and reduction of 3 are ligand centered. A simple MO model is developed in order to understand the EPR properties of the monocation and monoanion of 3.

Journal Article↗

PubMed2002

Theoretical evidence for the singlet diradical character of square planar nickel complexes containing two o-semiquinonato type ligands.

Density functional theory and complete active space self-consistent field computations are applied to elucidate the singlet diradical character of square planar, diamagnetic nickel complexes that contain two bidentate ligands derived from o-catecholates, o-phenylenediamines, o-benzodithiolates, o-aminophenolates, and o-aminothiophenolates. In the density functional framework, the singlet diradical character is discussed within the broken symmetry formalism. The singlet-triplet energy gaps, the energy gained from symmetry breaking, the spin distribution in the lowest triplet state, and the form of the magnetic orbitals are applied as indicators for the singlet diradical character. Moreover, a new index for the diradical character is proposed that is based on symmetry breaking. All symmetry breaking criteria show that the complexes obtained from o-catecholates and o-benzodithiolates have the largest and the smallest singlet diradical character, respectively. The singlet diradical character should be intermediate for the complexes derived from o-phenylenediamines, o-aminophenolates, and o-aminothiophenolates. The diradical character of all complexes suggests the presence of Ni(II) central atoms. This is also indicated by the d-populations computed by means of the natural population analysis.

Journal Article↗

PubMed2002

Electron-mediating Cu(A) centers in proteins: a comparative high field (1)H ENDOR study.

High field (W-band, 95 GHz) pulsed electron-nuclear double resonance (ENDOR) measurements were carried out on a number of proteins that contain the mixed-valence, binuclear electron-mediating Cu(A) center. These include nitrous oxide reductase (N(2)OR), the recombinant water-soluble fragment of subunit II of Thermus thermophilus cytochrome c oxidase (COX) ba(3) (M160T9), its M160QT0 mutant, where the weak axial methionine ligand has been replaced by a glutamine, and the engineered "purple" azurin (purpAz). The three-dimensional (3-D) structures of these proteins, apart from the mutant, are known. The EPR spectra of all samples showed the presence of a mononuclear Cu(II) impurity with EPR characteristics of a type II copper. At W-band, the g( perpendicular) features of this center and of Cu(A) are well resolved, thus allowing us to obtain a clean Cu(A) ENDOR spectrum. The latter consists of two types of ENDOR signals. The first includes the signals of the four strongly coupled cysteine beta-protons, with isotropic hyperfine couplings, A(iso), in the 7-15 MHz range. The second group consists of weakly coupled protons with a primarily anisotropic character with A(zz) < 3 MHz. Orientation selective ENDOR spectra were collected for N(2)OR, M160QT0, and purpAz, and simulations of the cysteine beta-protons signals provided their isotropic and anisotropic hyperfine interactions. A linear correlation with a negative slope was found between the maximum A(iso) value of the beta-protons and the copper hyperfine interaction. Comparison of the best-fit anisotropic hyperfine parameters with those calculated from dipolar interactions extracted from the available 3-D structures sets limit to the sulfur spin densities. Similarly, the small coupling spectral region was simulated on the basis of the 3-D structures and compared with the experimental spectra. It was found that the width of the powder patterns of the weakly coupled protons recorded at g(perpendicular) is mainly determined by the histidine H(epsilon)(1) protons. Furthermore, the splitting in the outer wings of these powder patterns indicates differences in the positions of the imidazole rings relative to the Cu(2)S(2) core. Comparison of the spectral features of the weakly coupled protons of M160QT0 with those of the other investigated proteins shows that they are very similar to those of purpAz, where the Cu(A) center is the most symmetric, but the copper spin density and the H(epsilon)(1)-Cu distances are somewhat smaller. All proteins show the presence of a proton with a significantly negative A(iso) value which is assigned to an amide proton of one of the cysteines. The simulations of both strongly and weakly coupled protons, along with the known copper hyperfine couplings, were used to estimate and compare the spin density distribution in the various Cu(A) centers. The largest sulfur spin density was found in M160T9, and the lowest was found in purpAz. In addition, using the relation between the A(iso) values of the four cysteine beta-protons and the H-C-S-S dihedral angles, the relative contribution of the hyperconjugation mechanism to A(iso) was determined. The largest contribution was found for M160T9, and the lowest was found for purpAz. Possible correlations between the spin density distribution, structural features, and electron-transfer functionality are finally suggested.

Azurin↗

PubMed2002

Tuning the electronic structure of octahedral iron complexes [FeL(X)] (L = 1-alkyl-4,7-bis(4-tert-butyl-2-mercaptobenzyl)-1,4,7-triazacyclononane, X = Cl, CH(3)O, CN, NO). The S = 1/2 <==>3/2 Spin equilibrium of [FeL(Pr)(NO)].

Two new pentadentate, pendent arm macrocyclic ligands of the type 1-alkyl-4,7-bis(4-tert-butyl-2-mercaptobenzyl)-1,4,7-triazacyclononane where alkyl represents an isopropyl, (L(Pr))(2-), or an ethyl group, (L(Et))(2-), have been synthesized. It is shown that they bind strongly to ferric ions generating six-coordinate species of the type [Fe(L(alk))X]. The ground state of these complexes is governed by the nature of the sixth ligand, X: [Fe(III)(L(Et))Cl] (2) possesses an S = 5/2 ground state as do [Fe(III)(L(Et))(OCH(3))] (3) and [Fe(III)(L(Pr))(OCH(3))] (4). In contrast, the cyano complexes [Fe(III)(L(Et))(CN)] (5) and [Fe(III)(L(Pr))(CN)] (6) are low spin ferric species (S = 1/2). The octahedral [FeNO](7) nitrosyl complex [Fe(L(Pr))(NO)] (7) displays spin equilibrium behavior S = 1/2<==>S = (3)/(2) in the solid state. Complexes [Zn(L(Pr))] (1), 4.CH(3)OH, 5.0.5toluene.CH(2)Cl(2), and 7.2.5CH(2)Cl(2) have been structurally characterized by low-temperature (100 K) X-ray crystallography. All iron complexes have been carefully studied by zero- and applied-field Mössbauer spectroscopy. In addition, Sellmann's complexes [Fe(pyS(4))(NO)](0/1+) and [Fe(pyS(4))X] (X = PR(3), CO, SR(2)) have been studied by EPR and Mössbauer spectroscopies and DFT calculations (pyS(4) = 2,6-bis(2-mercaptophenylthiomethyl)pyridine(2-)). It is concluded that the electronic structure of 7 with an S = 1/2 ground state is low spin ferrous (S(Fe) = 0) with a coordinated neutral NO radical (Fe(II)-NO) whereas the S = 3/2 state corresponds to a high spin ferric (S(Fe) = 5/2) antiferromagnetically coupled to an NO(-) anion (S = 1). The S = 1/2<==>S = 3/2 equilibrium is then that of valence tautomers rather than that of a simple high spin<==>low spin crossover.

Journal Article↗

PubMed2002

Spectroscopic and electronic structure studies of protocatechuate 3,4-dioxygenase: nature of tyrosinate-Fe(III) bonds and their contribution to reactivity.

The geometric and electronic structure of the high-spin ferric active site of protocatechuate 3,4-dioxygenase (3,4-PCD) has been examined by absorption (Abs), circular dichroism (CD), magnetic CD (MCD), and variable-temperature-variable-field (VTVH) MCD spectroscopies. Density functional (DFT) and INDO/S-CI molecular orbital calculations provide complementary insight into the electronic structure of 3,4-PCD and allow an experimentally calibrated bonding scheme to be developed. Abs, CD, and MCD indicate that there are at least seven transitions below 35 000 cm(-1) which arise from tyrosinate ligand-to-metal-charge transfer (LMCT) transitions. VTVH MCD spectroscopy gives the polarizations of these LMCT bands in the principal axis system of the D-tensor, which is oriented relative to the molecular structure from the INDO/S-CI calculations. Three transitions are associated with the equatorial tyrosinate and four with the axial tyrosinate. This large number of transitions per tyrosinate is due to the pi and importantly the sigma overlap of the two tyrosinate valence orbitals with the metal d orbitals and is governed by the Fe-O-C angle and the Fe-O-C-C dihedral angles. The previously reported crystal structure indicates that the Fe-O-C angles are 133 degrees and 148 degrees for the equatorial and axial tyrosinate, respectively. Each tyrosinate has transitions at different energies with different intensities, which correlate with differences in geometry that reflect pseudo-sigma bonding to the Fe(III) and relate to reactivity. These factors reflect the metal-ligand bond strength and indicate that the axial tyrosinate-Fe(III) bond is weaker than the equatorial tyrosinate-Fe(III) bond. Furthermore, it is found that the differences in geometry, and hence electronic structure, are imposed by the protein. The consequences to catalysis are significant because the axial tyrosinate has been shown to dissociate upon substrate binding and the equatorial tyrosinate in the enzyme-substrate complex is thought to influence asymmetric binding of the chelated substrate moiety via a strong trans influence which activates the substrate for reaction with O2.

Binding Sites↗

PubMed2002

Inactivation of the Na+-translocating NADH:ubiquinone oxidoreductase from Vibrio alginolyticus by reactive oxygen species.

The Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) from Vibrio alginolyticus was inactivated by reactive oxygen species. Highest Na+-NQR activity was observed in anaerobically prepared membranes that exhibited 1:1 coupling of NADH oxidation and Q reduction activities (1.6 U x mg(-1)). Optical and EPR spectroscopy documented the presence of b-type cytochromes, a [2Fe-2S] cluster and an organic radical signal in anaerobically prepared membranes from V. alginolyticus. It is shown that the [2Fe-2S] cluster previously assigned to the Na+-NQR originates from the succinate dehydrogenase or the related enzyme fumarate reductase.

Bacterial Proteins↗

PubMed1999

Relationship between the Dipole Strength of Ligand Pre-Edge Transitions and Metal-Ligand Covalency.

The electric dipole contributions to the observed pre-edge intensities in ligand K-edge X-ray absorption (XAS) spectra are analyzed in terms of covalent-bonding contributions between the metal and ligand for a prototype system with one hole in the d shell. One- and two-center contributions to the intensity are identified. By direct evaluation of the integrals involved in the intensity expression, the two-center terms are shown to be at least 1 order of magnitude smaller than the one-center terms and can be ignored to a reasonable approximation. The one-center terms reflect the amount of ligand character in the partially occupied metal-based MOs and are proportional to the intrinsic transition moment of a ligand-centered 1s --> np transition. The final intensity does not contain terms proportional to the square of the metal-ligand distance as might have been expected on the basis of the analogy between ligand K-edge and ligand-to-metal charge transfer (LMCT) transitions that both formally lead to transfer of electron density from the ligand to the metal. This is due to the fact that the transition density is completely localized on the ligand in the case of a ligand K-edge transition but is delocalized over the metal and the ligand in the case of a LMCT transition. The effective nuclear charge dependence of the one-center transition moment integral was studied by Hartree-Fock level calculations and was found to be small. Electronic relaxation effects were considered and found to be small from a Hartree-Fock calculation on a cupric chloride model.

Journal Article↗

PubMed1999

MCD C-Term Signs, Saturation Behavior, and Determination of Band Polarizations in Randomly Oriented Systems with Spin S >/= (1)/(2). Applications to S = (1)/(2) and S = (5)/(2).

The magnetic circular dichroism (MCD) properties of a spin-allowed transition from an orbitally nondegenerate ground state manifold A to an orbitally nondegenerate excited state manifold J in the presence of spin-orbit coupling (SOC) are derived for any S >/= (1)/(2). Three physically distinct mechanisms are identified that lead to MCD intensity and depend on SOC between excited states which leads to a sum rule and SOC between the ground state and other excited states that leads to deviations from the sum rule. The model is valid for any symmetry of the magnetic coupling tensors and arbitrary transition polarizations. The S = (1)/(2) case is analytically solved, and the determination of linear polarizations from MCD saturation magnetization data is discussed. For all mechanisms the MCD intensity is proportional to the spin-expectation values of the ground state sublevels which are conveniently generated from a spin-Hamiltonian (SH). For Kramers systems with large zero-field splittings (ZFSs) this allows the contribution from each Kramers doublet to the total MCD intensity to be related through their effective g-values, therefore significantly reducing the number of parameters required to analyze experimental data. The behavior of high-spin systems is discussed in the limits of weak, intermediate, and strong ZFS relative to the Zeeman energy. The model remains valid in the important case of intermediate ZFS where the ground state sublevels may cross as a function of applied magnetic field and there are significant off-axis contributions to the MCD intensity due to a change of the electron spin quantization axis. The model permits calculation of MCD C-term signs from molecular wave functions, and explicit expressions are derived in terms of MOs for S = (1)/(2) and S = (5)/(2). Two examples from the literature are analyzed to demonstrate how the C-term signs can be evaluated by a graphical method that gives insight into their physical origin.

Journal Article↗

PubMed1998

Calculation of Zero-Field Splittings, g-Values, and the Relativistic Nephelauxetic Effect in Transition Metal Complexes. Application to High-Spin Ferric Complexes.

Equations are derived and discussed that allow the computation of zero-field splitting (ZFS) tensors in transition metal complexes for any value of the ground-state total spin S. An effective Hamiltonian technique is used and the calculation is carried to second order for orbitally nondegenerate ground states. The theory includes contributions from excited states of spin S and S +/- 1. This makes the theory more general than earlier treatments. Explicit equations are derived for the case where all states are well described by single-determinantal wave functions, for example restricted open shell Hartree-Fock (HF) and spin-polarized HF or density functional (DFT) calculation schemes. Matrix elements are evaluated for many electron wave functions that result from a molecular orbital (MO) treatment including configuration interaction (CI). A computational implementation in terms of bonded functions is outlined. The problem of ZFS in high-spin ferric complexes is treated at some length, and contributions due to low-symmetry distortions, anisotropic covalency, charge-transfer states, and ligand spin-orbit coupling are discussed. ROHF-INDO/S-CI results are presented for FeCl(4)(-) and used to evaluate the importance of the various terms. Finally, contributions to the experimentally observed reduction of the metal spin-orbit coupling constants (the relativistic nephelauxetic effect) are discussed. B3LYP and Hartree-Fock calculations for FeCl(4)(-) are used to characterize the change of the iron 3d radial function upon complex formation. It is found that the iron 3d radial distribution function is significantly expanded and that the expansion is anisotropic. This is interpreted as a combination of reduction in effective charge on the metal 3d electrons (central field covalence) together with expansive promotion effects that are a necessary consequence of chemical bond formation. The (3d) values that are important in the interpretation of magnetic data are up to 15% reduced from their free-ion value before any metal-ligand orbital mixing (symmetry-restricted covalency) is taken into account. Thus the use of free-ion values for spin-orbit coupling and related constants in the analysis of experimental data leads to values for MO coefficients that overestimate the metal-ligand covalency.

Journal Article↗