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G Grégoire

Publications and source records attributed to G Grégoire.

At least 19 recordsLinked to original sources
PubMed2006

Ultrafast excited state dynamics in protonated GWG and GYG tripeptides.

The excited state dynamics of two protonated tripeptides GWG and GYG has been investigated by pump/probe femtosecond measurements on photofragments, to explore the behavior of peptides where the terminal protonated amino group is not directly linked to the aromatic residue. The dynamics observed are short and surprisingly similar to the dynamics observed on the free protonated tryptophan and tyrosine aromatic amino acids. Specific photofragments observed for protonated GWG are related to the formation of a radical species WG degrees (+) after cleavage of the C(alpha)-N bond near the tryptophan residue.

Peptides↗
PubMed2006

Ab initio molecular dynamics of protonated dialanine and comparison to infrared multiphoton dissociation experiments.

Finite temperature Car-Parrinello molecular dynamics simulations are performed for the protonated dialanine peptide in vacuo, in relation to infrared multiphoton dissociation experiments. The simulations emphasize the flexibility of the different torsional angles at room temperature and the dynamical exchange between different conformers which were previously identified as stable at 0 K. A proton transfer occurring spontaneously at the N-terminal side is also observed and characterized. The theoretical infrared absorption spectrum is computed from the dipole time correlation function, and, in contrast to traditional static electronic structure calculations, it accounts directly for anharmonic and finite temperature effects. The comparison to the experimental infrared multiphoton dissociation spectrum turns out very good in terms of both band positions and band shapes. It does help the identification of a predominant conformer and the attribution of the different bands. The synergy shown between the experimental and theoretical approaches opens the door to the study of the vibrational properties of complex and floppy biomolecules in the gas phase at finite temperature.

Alanine↗
PubMed2006

Comparison of the fragmentation pattern induced by collisions, laser excitation and electron capture. Influence of the initial excitation.

Collision-induced dissociation, laser-induced dissociation and electron-capture dissociation are compared on a singly and doubly protonated pentapeptide. The dissociation spectrum depends on the excitation mechanism and on the charge state of the peptide. The comparison of these results with the conformations obtained from Monte Carlo simulations suggests that the de-excitation mechanism following a laser or an electron-capture excitation is related to the initial geometry of the peptide.

Computer Simulation↗
PubMed2005

Statistical vs. non-statistical deactivation pathways in the UV photo-fragmentation of protonated tryptophan-leucine dipeptide.

The excited state dynamics of protonated tryptophan-leucine ions WLH+, generated in an electrospray source, is investigated by photo-induced fragmentation in the gas phase, using femtosecond laser pulses. Two main features arise from the experiment. Firstly, the initially excited pipi* state decays very quickly with 2 time constants of 1 and 10 ps. Secondly, the transient signals recorded on different fragments are not the same which indicates two competing primary fragmentation processes. One involves a direct dissociation from the excited state that gives evidence for a non-statistical deactivation path. The other is attributed to a statistical decay following internal conversion to the ground electronic surface.

Dipeptides↗
PubMed2005

Control of bond-cleaving reactions of free protonated tryptophan ion by femtosecond laser pulses.

The excited-state dynamics of protonated tryptophan ions is investigated by photoinduced fragmentation in the gas phase. In contrast to the neutral molecule that decays on the nanosecond time scale, the protonated species exhibits an ultrafast decay with two time constants of about 400 fs and 15 ps. In addition, after UV excitation by a pump photon at 266 nm, specific photofragments, and in particular the NH3-loss channel, can be enhanced by the absorption of a probe photon at 800 nm. The bond-cleaving reactions can thus be controlled by a variation of the pump/probe delay.

Cations↗
PubMed2005

Photoinduced processes in protonated tryptamine.

The electronic excited state dynamics of protonated tryptamine ions generated by an electrospray source have been studied by means of photoinduced dissociation technique on the femtosecond time scale. The result is that the initially excited state decays very quickly within 250 fs. The photoinduced dissociation channels observed can be sorted in two groups of fragments coming from two competing primary processes on the singlet electronic surface. The first one corresponds to a hydrogen-atom loss channel that creates a tryptamine radical cation. The radical cation subsequently fragments to smaller ions. The second process is internal conversion due to the H-atom recombination on the electronic ground state. Time-dependent density functional theory calculations show that an excited pisigma* state dissociative along the protonated amino N-H stretch crosses both the locally excited pipi* state and the electronic ground state S(0) and thus triggers the photofragmentation reactions. The two processes have equivalent quantum yields, approximately equal to 50% of the fragments coming from the H-atom loss reaction. The two primary reaction paths can clearly be distinguished by their femtosecond pump/probe dynamics recorded on the different fragmentation channels.

Journal Article↗
PubMed2001

Active and passive particles: modeling beads in a bacterial bath.

A simple model for the motion of passive particles in a bath of active, self-propelled ones is introduced. It is argued that this approach provides the correct framework within which to cast the recent experimental results obtained by Wu and Libchaber [Phys Rev. Lett. 84, 3017 (2000)] for the diffusive properties of polystyrene beads displaced by bacteria suspended in a two-dimensional fluid film. Our results suggest that superdiffusive behavior should indeed be generically observed in the transition region marking the onset of collective motion.

Bacterial Physiological Phenomena↗
PubMed1997

Discrepancies between meta-analyses and subsequent large randomized, controlled trials.

BACKGROUND: Meta-analyses are now widely used to provide evidence to support clinical strategies. However, large randomized, controlled trials are considered the gold standard in evaluating the efficacy of clinical interventions. METHODS: We compared the results of large randomized, controlled trials (involving 1000 patients or more) that were published in four journals (the New England Journal of Medicine, the Lancet, the Annals of Internal Medicine, and the Journal of the American Medical Association) with the results of meta-analyses published earlier on the same topics. Regarding the principal and secondary outcomes, we judged whether the findings of the randomized trials agreed with those of the corresponding meta-analyses, and we determined whether the study results were positive (indicating that treatment improved the outcome) or negative (indicating that the outcome with treatment was the same or worse than without it) at the conventional level of statistical significance (P<0.05). RESULTS: We identified 12 large randomized, controlled trials and 19 meta-analyses addressing the same questions. For a total of 40 primary and secondary outcomes, agreement between the meta-analyses and the large clinical trials was only fair (kappa= 0.35; 95 percent confidence interval, 0.06 to 0.64). The positive predictive value of the meta-analyses was 68 percent, and the negative predictive value 67 percent. However, the difference in point estimates between the randomized trials and the meta-analyses was statistically significant for only 5 of the 40 comparisons (12 percent). Furthermore, in each case of disagreement a statistically significant effect of treatment was found by one method, whereas no statistically significant effect was found by the other. CONCLUSIONS: The outcomes of the 12 large randomized, controlled trials that we studied were not predicted accurately 35 percent of the time by the meta-analyses published previously on the same topics.

Humans↗
PubMed1995

Activation of voltage-independent Ca2+ entry by noradrenaline involves cGMP in vascular myocytes.

Stimulation of portal vein myocytes with noradrenaline (NA) in the presence of a voltage-dependent Ca2+ channel blocker, evoked a transient increase in the concentration of free cytosolic Ca2+, due to inositol 1,4,5-trisphosphate mediated Ca2+ release, followed by activation of a Ca2+ entry pathway. Combining patch-clamp and indo-1 measurements we have tested the effects of various pharmacological agents on this Ca2+ entry following NA-induced Ca2+ release in order to determine the mechanism involved. Only the guanylate cyclase inhibitor LY-83583 specifically inhibited the maintained Ca2+ entry during NA stimulation. This inhibition was reversed by dibutyryl cGMP (DB-cGMP) or 8-bromo cGMP. Under control conditions, addition of DB-cGMP to the external solution was without effect. Thapsigargin and caffeine each depleted the intracellular Ca2+ store but did not evoke Ca2+ entry in venous myocytes under control conditions. However, application of DB-cGMP or NA after Ca2+ store depletion induced by caffeine or thapsigargin caused a rise in [Ca2+]i by activation of a Ca2+ entry pathway. The effect of cGMP seems to involve phosphorylation since cGMP-activated protein kinase inhibitors KT-5823 and H-8 blocked the NA-induced Ca2+ entry. Our results thus suggest that the activation of the voltage-independent Ca2+ entry by NA involves an increase in cellular cGMP.

Aminoquinolines↗
PubMed1995

Selecting the language of the publications included in a meta-analysis: is there a Tower of Babel bias?

Although they usually claim a very thorough search to retrieve every pertinent work, most meta-analyses published in English restrict their search to papers which were also published in English. We reviewed all the meta-analyses printed from 1 January 1991 to 1 April 1993 in 8 medical journals published in English and selected those who stated linguistic restrictions for inclusion in the analysis. The computerized search methods used in these meta-analyses were then duplicated looking specifically for publications written in the excluded languages. Each meta-analysis was then redone with identical statistical tests to determine if its conclusions would have been different if the paper(s) absent only for linguistic reasons had been included. A total of 36 meta-analyses of which 28 had language restrictions were identified. The computer searches yielded 19 papers scientifically acceptable but excluded for linguistic reasons. Eleven of these articles were retained as having the potential to modify their corresponding 7 meta-analyses. One meta-analysis which concluded that selective decontamination of the digestive tract in intensive care units did not produce a significant change in mortality between treatment and control patients (OR 0.70; 95% CI 0.45-1.09) would have arrived at a different conclusion (OR 0.67; 95% CI 0.47-0.95) if a paper written in German in a Swiss journal had been included in the analysis. Our study demonstrates that, in at least one out of 36 consecutive meta-analyses the exclusion of papers for linguistic reasons produced results different from those which would have been obtained if this exclusion criteria had not been used.

Clinical Trials as Topic↗
PubMed1994

Photoreleased inositol 1,4,5-trisphosphate-induced response in single smooth muscle cells of rat portal vein.

1. The Ca2+ release in response to inositol 1,4,5-trisphosphate (InsP3) was studied in single patch-clamped smooth muscle cells of rat portal vein. InsP3 was photochemically produced from a caged InsP3 precursor included in the pipette solution. Changes in internal Ca2+ concentration ([Ca2+]i) were monitored by measuring Ca(2+)-activated K+ current. 2. Photoreleased InsP3 evoked a transient K+ current which was abolished when 10 mM EGTA or 5 mg ml-1 heparin was included in the pipette. The amplitude and time course of the K+ current responses depended on the light-flash intensity. The amplitude increased, and the latency and the time to peak decreased, with increasing flash intensity, suggesting that the amount of released Ca2+ varied as a function of the amount of InsP3 photoreleased. 3. The K+ current response to photolysis of caged InsP3 was abolished in the presence of 10 mM caffeine; conversely, caffeine was inefficient at inducing at K+ current when applied immediately after a light flash of maximal intensity. 4. The time course of the recovery of the K+ response evoked by a light flash of supramaximal intensity was similar to that obtained for the 10 mM caffeine-induced K+ current. The response recovered to 50% of control with an interval (t1/2) of about 10 s between pulses. The time course of the recovery of submaximal response to photoreleased InsP3 was considerably slower (t1/2 = 1 min), and did not correspond to that obtained for a response of similar amplitude evoked by 2 mM caffeine. 5. Responses to photoreleased InsP3 obtained after the cells were bathed for 3 min in Ca(2+)-free solution were compared with those obtained in 2 mM Ca2+ solution. Responses to light flashes of submaximal intensity were proportionally more inhibited than those evoked by supramaximal stimulations. 6. In portal vein smooth muscle cells, the InsP3-sensitive Ca2+ store seems also to be sensitive to caffeine. Our results suggest that the InsP3-induced Ca2+ release was modulated by regulatory mechanisms.

Animals↗
PubMed1994

Release of Ca2+ from intracellular store in smooth muscle cells of rat portal vein by ATP-induced Ca2+ entry.

1. The action of adenosine 5'-triphosphate (ATP, 10 microM) was studied in single patch-clamped smooth muscle cells of rat portal vein where the free internal Ca2+ concentration in the cell (Cai) was estimated by the emission from the dye indo-1. 2. In the presence of 20 microM gallopamil (D600), a blocker of voltage-dependent Ca2+ channels, ATP applied to cells held at a holding potential of -60 mV evoked a transient inward current and an increase in Cai. 3. The rise in Cai evoked by ATP was completely suppressed in the absence of external Ca2+ although a transient inward current was still observed. 4. ATP-induced responses were not modified by the addition of the inositol 1,4,5-trisphosphate receptor antagonist, heparin (1 mM) in the pipette solution. 5. In the presence of caffeine (5 mM) or ryanodine (100 microM) in the pipette solution, which deplete the intracellular Ca2+ store, the ATP-induced Cai rise was greatly reduced. 6. Our results suggest that in single cells from rat portal vein, ATP releases Ca2+ from intracellular stores without involving InsP3, but via a Ca2+ release mechanism activated by Ca2+ influx through ATP-gated channels.

Adenosine Triphosphate↗
PubMed1993

Noradrenaline-activated heparin-sensitive Ca2+ entry after depletion of intracellular Ca2+ store in portal vein smooth muscle cells.

Single portal vein smooth muscle cells were voltage-clamped using the whole cell patch-clamp technique. Intracellular free Ca2+ concentration ([Ca2+]i) was simultaneously monitored using the fluorescence from the dye indo-1. Noradrenaline (NA, 10 microM) evoked a transient increase in [Ca2+]i, due to inositol 1,4,5-trisphosphate (InP3)-induced Ca2+ release, followed by a sustained increase in [Ca2+]i, caused by extracellular Ca2+ entry. This phase was maintained as long as NA was present and was never observed when the agonist was only briefly applied (3 s). Neither ryanodine, nor caffeine produced the Ca2+ influx whereas the complete depletion of intracellular Ca2+ pool in the absence of external Ca2+ allowed, when Ca2+ was readmitted, the activation of the Ca2+ entry which was used to replenish Ca2+ store. During NA stimulation, the Ca2+ entry was activated even if the Ca2+ pool had not been totally emptied. The Ca2+ entry pathway involved was blocked by Ni2+ and Mn2+, was not permeable to these ions, and was more sensitive to heparin than the InsP3-induced Ca2+ release. Thus, the complete depletion of Ca2+ store activates a Ca2+ influx which is modulated by NA such as in its presence, a partial depletion is enough to induce Ca2+ entry.

Acetylcholine↗
PubMed1993

Ca2+ and Sr2+ entry induced Ca2+ release from the intracellular Ca2+ store in smooth muscle cells of rat portal vein.

1. Changes in cytosolic free Ca2+ concentration ([Ca2+]i) induced by membrane depolarizations were investigated using indo-1 microspectrofluorimetry in single patch-clamped smooth muscle cells of rat portal vein at room temperature (20-21 degrees C) and in the presence of 2 mM Ca2+. 2. During a 1 s depolarization from -50 to -30 mV [Ca2+]i rose, but, although the Ca2+ current was terminated by repolarization to -50 mV, [Ca2+]i continued to increase in a regenerative manner. The delay between the end of the voltage step and the peak of the [Ca2+]i rise was reduced by increasing the depolarization. 3. When a second identical depolarization was rapidly applied (8-13s) after the first one, it induced an identical Ca2+ current but a smaller increase in [Ca2+]i which started to decay upon repolarization. 4. A low concentration of caffeine (0.05 mM), applied to cells showing a small depolarization-induced [Ca2+]i transient which reached a peak at the end of the voltage step, produced an increase in amplitude and in duration of the [Ca2+]i rise without changing the amplitude of the depolarization-induced Ca2+ current. 5. The depolarization-induced [Ca2+]i rise was shortened and reduced in amplitude after noradrenaline- (NA 10 microM) or caffeine- (5 mM) induced release of Ca2+ store and when the patch pipette solution contained ryanodine (100 microM). Under these conditions, the depolarization-induced [Ca2+]i transient was maximal at the end of the voltage step and declined immediately when the membrane was repolarized at -50 mV. 6. Experiments were done by replacing extracellular Ca2+ by Sr2+. Depolarization-induced Sr2+ entry through voltage-dependent Ca2+ channels could evoke an increase in indo-1 fluorescence which occurred after the termination of the voltage step. This delayed component of fluorescence increase displayed properties similar to those of the regenerative [Ca2+]i rise recorded in the Ca(2+)-containing solution. 7. The inefficiency of the second of two successive depolarizations to produce the delayed component of [Ca2+]i rise was not due to the emptiness of the intracellular Ca2+ store since, under these conditions, caffeine was still able to induce a Ca2+ release. 8. It is concluded that depolarization-evoked Ca2+ or Sr2+ entry through voltage-dependent Ca2+ channels induced the release of Ca2+ from an intracellular store, which could occur in a regenerative manner, independent of the termination of the triggering current.

Animals↗