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Biomedical subjects

G L Atkins

Publications and source records attributed to G L Atkins.

At least 19 recordsLinked to original sources

Allosteric regulation of proton translocation by a vacuolar adenosinetriphosphatase.

The kinetics of nucleoside-triphosphate-dependent proton translocation by a vacuolar-type adenosine-triphosphatase have been studied, using the enzyme from bovine chromaffin-granule membranes, purified and reconstituted into proteoliposomes. The reaction was followed by recording the quenching of the fluorescence of the permeant weak base 9-amino-6-chloro-2-methoxyacridine; fluorescence data were collected and stored in digital form, and the initial reaction rates estimated by linear regression. In the absence of nucleoside diphosphate, the dependence of initial rates of proton translocation on substrate concentration were fitted well by the Michaelis-Menten equation, as were the kinetics of ATP hydrolysis. ADP and other nucleoside diphosphates were potent inhibitors of the ATPase, effecting a reduction in the maximum velocity of the reaction, and producing sigmoid substrate-saturation curves which could be fitted by the empirical Hill equation, the Hill coefficient approaching 2 at high inhibitor concentrations. Data sets containing initial-rate estimates were collected over a wide range of independently varied concentrations of substrate and inhibitor and were modeled, using rate equations derived from several different models based on the concerted-transition model of allosteric inhibition proposed by Monod, Wyman and Changeux. These equations were fitted to the data by weighted non-linear regression, using an iterative computer program to obtain the best estimates of kinetic parameters. One model consistently fitted all of the data sets better than all the others, and this model was based on the following assumptions: that the ATPase exists in two conformational states, R and T; that only the R state is catalytically active; that each state contains three kinetically equivalent catalytic sites, and one regulatory site; that nucleoside triphosphates bind only to the catalytic sites, and that nucleoside diphosphates bind both to the catalytic sites and to the regulatory site. The optimized values of the kinetic parameters indicate that in the absence of nucleoside diphosphate, the enzyme is almost completely in the R state; that nucleoside triphosphates bind more tightly to the R than to the T state; that binding of nucleoside diphosphates to the regulatory site is very tight, but occurs only in the T state; and that competitive binding of nucleoside diphosphates at the catalytic sites is stronger in the T state than in the R state. Experiments conducted with varying total magnesium concentrations indicated that the magnesium complexes of nucleoside diphosphates are much stronger inhibitors than the free nucleotides, and that free nucleoside triphosphates are weakly inhibitory, probably competing with the magnesium complexes for binding at the catalytic sites.(ABSTRACT TRUNCATED AT 400 WORDS)

Adenosine Triphosphate↗

Arachidonic acid binds to apolipoprotein D: implications for the protein's function.

The lipocalin apolipoprotein D (ApoD) is associated in human plasma with lecithin-cholesterol acyl transferase. It has also been found in high concentration in the fluid of gross cystic disease of the mammary gland. Using protein fluorescence quenching, it is shown that ApoD binds arachidonic acid (Ka of 1.6 x 10(8) M-1) and as previously known progesterone (Ka of 2.5 x 10(6) M-1), but neither cholesterol nor any of the other prostanoid molecules examined had measurable affinity. This specific binding of arachidonate, also observable directly, suggests a role for ApoD in the mobilisation of arachidonic acid, and hence prostaglandin synthesis.

Apolipoproteins↗

Developmental changes in the type I procollagen processing pathway in chick-embryo cornea.

Type I procollagen processing in chick-embryo corneas was studied at days 12, 14 and 17 of development. Pulse-chase experiments and electrophoretic analysis of salt-soluble extracts showed developmental changes in the processing pathway. A kinetic model was fitted to the data to determine rate constants for processing of both N- and C-propeptides. Data for pro alpha 1(I)-chain processing and pro alpha 2(I)-chain processing were fitted separately (where pro means procollagen). Between days 12 and 17 the relative flux through the pC-collagen (procollagen chain lacking the N-propeptide) and pN-collagen (procollagen chain lacking the C-propeptide) pathways increased approx. 4-fold. Pro alpha 1(I) chains and pro alpha 2(I) chains were processed by slightly different routes. Variations in the rate constants were compared with electron-microscopic measurements of collagen fibril diameters at each stage of development. Diameters increased by less than 10% over the period from 12 to 17 days. It was concluded that fibril diameters are relatively insensitive to the pathway of procollagen processing in the salt-soluble pool.

Animals↗

Alternate models for shared carriers or a single maturing carrier in hexose uptake into rabbit jejunum in vitro.

The uptake (tissue accumulation) of three hexoses into rabbit jejunum was measured in a flux chamber in conditions of effective stirring. Glucose uptake was inhibited by galactose or 3-O-methylglucose: 1-40 mM galactose caused a progressive decline in glucose uptake; 1-5 mM 3-O-methylglucose inhibited glucose uptake but higher concentrations of 3-O-methylglucose had no further effect. When 1-40 mM 3-O-methylglucose was added to glucose plus galactose there was a further decrease in the uptake of glucose; adding 1-40 mM galactose to glucose plus 3-O-methylglucose also produced a decrease in glucose uptake. Both glucose and 3-O-methylglucose inhibited uptake of galactose but the pattern of inhibition varied between the two sugars. The uptake of 3-O-methylglucose was also inhibited by glucose and by galactose, but the uptake of 3-O-methylglucose in the presence of either galactose or glucose was no further reduced by adding the third hexose. Graphical analysis and analysis by non-linear regression both showed that neither the single Michaelis-Menten function, nor the single Michaelis-Menten-plus-competitive-inhibition function was appropriate for any of these data. The results are consistent with the hypothesis that either there are multiple (at least three) intestinal carriers for hexoses; alternatively that there is a single carrier whose transport properties for the three hexoses change differentially during cell maturation and migration up the villus.

3-O-Methylglucose↗

Nonlinear regression on a microcomputer: which program?

Eleven published programs for performing nonlinear regression using a microcomputer have been reviewed. They have been assessed according to many criteria, especially: application, program language, algorithm used, method for calculating partial differentials, facility for weighting, desirable input and output features, robustness during execution, memory requirements, accessability, ease of implementation and evaluation and testing. No one program contains all the desirable characteristics discussed, but guidance is given as to which might be the most suitable for a particular purpose or for a given microcomputer system.

Algorithms↗

The economic status of the oldest old.

Proposals to shift more of Medicare's costs to beneficiaries raise the question of whether the oldest old--the heaviest users--have the resources to bear these costs. Information on cash income, assets, other economic resources, and in-kind benefits provides an assessment of the economic status of the very old. When all factors and adjustments are considered, the oldest old, as a group, are shown to have substantially lower economic status than the young old.

Aged↗

A comparison of methods for estimating the kinetic parameters of two simple types of transport process.

Sets of experimental data, with known characteristics and error structures, have been simulated for the Michaelis-Menten equation plus a second term, either for linear transport or for competitive inhibition. The Michaelis-Menten equation plus linear term was fitted by several methods and the accuracy and the precision of the parameter estimates from the several methods were compared. The model-fitting methods were: three for least-squares non-linear regression, computer versions of two graphical methods and of two non-parametric methods. The most precise and accurate method was that of D.W. Marquardt (J. Soc. Ind. Appl. Math. 11 (1963) 431--441). The Michaelis-Menten equation with competitive inhibition was also fitted by several methods, viz., two for least-squared non-linear regression, non-parametric method and four variants of the Preston-Schaeffer-Curran plot (Preston, R.L. et al. (1974) J. Gen. Physiol. 64, 443--467). The most precise and accurate of these was the non-linear regression method of W.W. Cleland (Adv. Enzymol. 29 (1967) 1--32). For both these models, the various graphical methods and non-parametric methods gave poor results and are not recommended.

Binding, Competitive↗

Fitting biological equations to data using non-parametric methods.

Simulated experimental data were generated for these equations: a straight line, the integrated Michaelis--Menten equation, plus a linear term, the Hill equation, a two-exponential function and a double Michaelis--Menten equation. The equations were fitted to the data using (i) least-squares and (ii) non-parametric methods. The precision and accuracy of the parameter estimates obtained by each method were compared and the methods assessed. For several of the equations, non-parametric methods provided robust techniques for parameter estimation. For the remainder, the results were poor. The reasons for this are discussed.

Computers↗

Mean solute concentration for use with the Michaelis-Menten equation applied to the analysis of data from intestinal perfusion experiments.

A number of algebraic expressions for the solute concentration for use with the Michaelis-Menten equation during the analysis of data from intestinal perfusion experiments have been investigated. It is concluded that the most suitable, especially if water absorption is occurring, is of the form: S = (S initial--S effluent)/ln(S initial/S effluent).

Animals↗

An evaluation of suitable functions for the insulin standard curve.

The insulin radioimmunoassay technique used for human insulin has been modified for measuring rabbit insulin (i) at lower concentrations of insulin in plasma, and (ii) more precisely. Eleven algebraic functions were fitted in turn to fifty-three data sets. The goodness-of-fit was assessed in each case. It was concluded that a quadratic equation was the best function for the standard curve of the modified immunoassay, although this function is not necessarily the best for other different immunoassays.

Animals↗