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G Martínez-Mekler

Publications and source records attributed to G Martínez-Mekler.

5 recordsLinked to original sources

Deterministic ratchets, circle maps, and current reversals.

In this work we transform the deterministic dynamics of an overdamped tilting ratchet into a discrete dynamical map by looking stroboscopically at the continuous motion originally ruled by differential equations. We show that, for the simple and widely used case of periodic dichotomous driving forces, the resulting discrete map belongs to the class of circle homeomorphisms. This approach allows us to apply the well-known properties of such maps to derive the necessary and sufficient conditions that the ratchet potential must satisfy in order to have a vanishing current. Furthermore, as a consequence of the above, we show (i) that there is a class of periodic potentials which do not exhibit the rectification phenomenon in spite of their asymmetry and (ii) that current reversals occur in the deterministic case for a large class of ratchet potentials.

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Parameter space reduction criteria to search for synchronization domains in coupled discrete systems.

Based on analytical considerations, we introduce criteria that enable us to encapsulate the parameter domains for which chaotic synchronization in linearly coupled map systems may be attained. Our aim is to provide means to readily determine parameter regions which preclude synchronization. This results in a significant reduction of parameter space that one needs to explore. Our findings hold for both identical and quasi-identical (small parameter mismatch) maps subjected to unidirectional and bidirectional coupling. As a testing ground we present numerical calculations for the logistic and cubic maps which validate the predictive capability of our approach. Our main contribution relies on the applicability of one of our criteria to experimental situations. Since in real life it is almost impossible to construct two truly identical systems, the results for quasi-identical maps are of particular relevance.

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Translocation properties of primitive molecular machines and their relevance to the structure of the genetic code.

We address the question, related with the origin of the genetic code, of why are there three bases per codon in the translation to protein process. As a follow-up to our previous work (Aldana et al., 1998, Martínez-Mekler et al., 1999a,b), we approach this problem by considering the translocation properties of primitive molecular machines, which capture basic features of ribosomal/messenger RNA interactions, while operating under prebiotic conditions. Our model consists of a short one-dimensional chain of charged particles (rRNA antecedent) interacting with a polymer (mRNA antecedent) via electrostatic forces. The chain is subject to external forcing that causes it to move along the polymer which is fixed in a quasi-one-dimensional geometry. Our numerical and analytic studies of statistical properties of random chain/polymer potentials suggest that, under very general conditions, a dynamics is attained in which the chain moves along the polymer in steps of three monomers. By adjusting the model in order to consider present-day genetic sequences, we show that the above property is enhanced for coding regions. Intergenic sequences display a behavior closer to the random situation. We argue that this dynamical property could be one of the underlying causes for the three-base codon structure of the genetic code

Animals↗

Transport properties of the diluted Lorentz slab.

We study the behavior of a point particle incident on a slab of a randomly diluted triangular array of circular scatterers. Various scattering properties, such as the reflection and transmission probabilities and the scattering time are studied as a function of thickness and dilution. We show that a diffusion model satisfactorily describes the mentioned scattering properties. We also show how some of these quantities can be evaluated exactly and their agreement with numerical experiments. Our results exhibit the dependence of these scattering data on the mean free path. This dependence again shows excellent agreement with the predictions of a Brownian motion model.

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Primitive molecular machine scenario for the origin of the three base codon composition.

We set up a scenario for the operation of primordial synthesis machines operating in outer space quasi one dimensional channels, where polymers interact with fixed particles. The scheme allows for polymerization, translocation and translation. We will show that under very general conditions the particle/polymer interaction potential has spatial regularities with an average distance of three between neighboring minima. We present a model that exhibits how primitive molecular machines may convert the structural properties of the potential into locomotion regularities. On average, polymer movement takes place by shifts with long time intervals every three displacements. We argue that this feature is generic and lies at the origin of the three base codon composition.

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