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G McVean

Publications and source records attributed to G McVean.

7 recordsLinked to original sources
PubMed2006

The distribution and causes of meiotic recombination in the human genome.

Using the statistical analysis of genetic variation, we have developed a high-resolution genetic map of recombination hotspots and recombination rate variation across the human genome. This map, which has a resolution several orders of magnitude greater than previous studies, identifies over 25,000 recombination hotspots and gives new insights into the distribution and determination of recombination. Wavelet-based analysis demonstrates scale-specific influences of base composition, coding context and DNA repeats on recombination rates, though, in contrast with other species, no association with DNase I hypersensitivity. We have also identified specific DNA motifs that are strongly associated with recombination hotspots and whose activity is influenced by local context. Comparative analysis of recombination rates in humans and chimpanzees demonstrates very high rates of evolution of the fine-scale structure of the recombination landscape. In the light of these observations, we suggest possible resolutions of the hotspot paradox.

Animals↗
PubMed2004

The influence of mutation, recombination, population history, and selection on patterns of genetic diversity in Neisseria meningitidis.

Patterns of genetic diversity within populations of human pathogens, shaped by the ecology of host-microbe interactions, contain important information about the epidemiological history of infectious disease. Exploiting this information, however, requires a systematic approach that distinguishes the genetic signal generated by epidemiological processes from the effects of other forces, such as recombination, mutation, and population history. Here, a variety of quantitative techniques were employed to investigate multilocus sequence information from isolate collections of Neisseria meningitidis, a major cause of meningitis and septicemia world wide. This allowed quantitative evaluation of alternative explanations for the observed population structure. A coalescent-based approach was employed to estimate the rate of mutation, the rate of recombination, and the size distribution of recombination fragments from samples from disease-associated and carried meningococci obtained in the Czech Republic in 1993 and a global collection of disease-associated isolates collected globally from 1937 to 1996. The parameter estimates were used to reject a model in which genetic structure arose by chance in small populations, and analysis of molecular variation showed that geographically restricted gene flow was unlikely to be the cause of the genetic structure. The genetic differentiation between disease and carriage isolate collections indicated that, whereas certain genotypes were overrepresented among the disease-isolate collections (the "hyperinvasive" lineages), disease-associated and carried meningococci exhibited remarkably little differentiation at the level of individual nucleotide polymorphisms. In combination, these results indicated the repeated action of natural selection on meningococcal populations, possibly arising from the coevolutionary dynamic of host-pathogen interactions.

Adolescent↗
PubMed2000

Evolutionary genetics: what is driving male mutation?

In mammals, most new mutations occur in males. But a study of the evolution of a human X to Y chromosomal translocation has revealed a sex bias much lower than previous estimates. Patterns of substitution suggest that differential methylation between male and female germ lines is a key determinant of the mutation rate.

Animals↗
PubMed1996

Genetic conflicts and the paradox of sex determination: three paths to the evolution of female intersexuality in a mammal.

That sex determining systems ever change is paradoxical but can be explained by noting that conflict between selfish elements and their modifiers will often cause a shift in sex determining strategy. The evolution of the novel sex determining system of moles (Talpa europaea and T. occidentalis) may, we argue, be an example of just such a process. Three different models for the evolution of female intersexuality are presented. These all attempt to account for (1) the fact that a few years ago populations of moles had high frequencies of sterile XX individuals that were either morphologically male or intersex (other XX individuals were normal females) and (2) that presently, the XX individuals in the same population are exclusively fertile intersexes that are functionally female; i.e. have follicle producing ovotestes. This case history is compared to that of the wood lemming and two similarities are discussed. First, in both cases it is noted that one end product could be approached from different routes. Second, selfish elements may be involved in the evolution of both systems. In general, it is suggested that XY sex determination, far from being resilient to evolutionary change, is vulnerable to take-over by selfish elements. This is particularly the case in mammals in which transplacental interactions could allow manipulation of sex determination in one foetus by another. This, we also suggest, is a good candidate explanation for the evolution of novel sex determination in Talpa.

Animals↗