Biomedical subjects

Gabriel Turinici

Publications and source records attributed to Gabriel Turinici.

4 recordsLinked to original sources

PubMed2004

High-order averaging schemes with error bounds for thermodynamical properties calculations by molecular dynamics simulations.

We introduce high-order formulas for the computation of statistical averages based on the long-time simulation of molecular dynamics trajectories. In some cases, this allows us to significantly improve the convergence rate of time averages toward ensemble averages. We provide some numerical examples that show the efficiency of our scheme. When trajectories are approximated using symplectic integration schemes (such as velocity Verlet), we give some error bounds that allow one to fix the parameters of the computation in order to reach a given desired accuracy in the most efficient manner.

Journal Article↗

PubMed2004

Efficient algorithms for the laboratory discovery of optimal quantum controls.

The laboratory closed-loop optimal control of quantum phenomena, expressed as minimizing a suitable cost functional, is currently implemented through an optimization algorithm coupled to the experimental apparatus. In practice, the most commonly used search algorithms are variants of genetic algorithms. As an alternative choice, a direct search deterministic algorithm is proposed in this paper. For the simple simulations studied here, it outperforms the existing approaches. An additional algorithm is introduced in order to reveal some properties of the cost functional landscape.

Journal Article↗

PubMed2004

Generalized monotonically convergent algorithms for solving quantum optimal control problems.

A wide range of cost functionals that describe the criteria for designing optimal pulses can be reduced to two basic functionals by the introduction of product spaces. We extend previous monotonically convergent algorithms to solve the generalized pulse design equations derived from those basic functionals. The new algorithms are proved to exhibit monotonic convergence. Numerical tests are implemented in four-level model systems employing stationary and/or nonstationary targets in the absence and/or presence of relaxation. Trajectory plots that conveniently present the global nature of the convergence behavior show that slow convergence may often be attributed to "trapping" and that relaxation processes may remove such unfavorable behavior.

Journal Article↗

PubMed2003

A double epidemic model for the SARS propagation.

BACKGROUND: An epidemic of a Severe Acute Respiratory Syndrome (SARS) caused by a new coronavirus has spread from the Guangdong province to the rest of China and to the world, with a puzzling contagion behavior. It is important both for predicting the future of the present outbreak and for implementing effective prophylactic measures, to identify the causes of this behavior. RESULTS: In this report, we show first that the standard Susceptible-Infected-Removed (SIR) model cannot account for the patterns observed in various regions where the disease spread. We develop a model involving two superimposed epidemics to study the recent spread of the SARS in Hong Kong and in the region. We explore the situation where these epidemics may be caused either by a virus and one or several mutants that changed its tropism, or by two unrelated viruses. This has important consequences for the future: the innocuous epidemic might still be there and generate, from time to time, variants that would have properties similar to those of SARS. CONCLUSION: We find that, in order to reconcile the existing data and the spread of the disease, it is convenient to suggest that a first milder outbreak protected against the SARS. Regions that had not seen the first epidemic, or that were affected simultaneously with the SARS suffered much more, with a very high percentage of persons affected. We also find regions where the data appear to be inconsistent, suggesting that they are incomplete or do not reflect an appropriate identification of SARS patients. Finally, we could, within the framework of the model, fix limits to the future development of the epidemic, allowing us to identify landmarks that may be useful to set up a monitoring system to follow the evolution of the epidemic. The model also suggests that there might exist a SARS precursor in a large reservoir, prompting for implementation of precautionary measures when the weather cools down.

China↗