Biomedical subjects

Gerrit Schüürmann

Publications and source records attributed to Gerrit Schüürmann.

At least 19 recordsLinked to original sources

PubMed2007

Silicone rod extraction of pharmaceuticals from water.

Silicone elastomer (in the form of a flexible rod) is one of the materials currently tested for use in analytical extraction techniques and passive sampling devices. We investigated the applicability of this material for the enrichment of selected polar pharmaceuticals (antipyrine, carbamazepine, diclofenac, ibuprofen, bezafibrate) from water. Time-resolved batch extraction tests (up to five weeks in duration) were performed in stirred water samples ( approximately 0.5 L) with 2-cm-long silicone rod pieces. After re-extraction of trapped compounds with methanol, analysis was performed using liquid chromatography coupled with mass spectrometry. Distribution equilibrium was reached after a test duration of seven days. The silicone rod/water partition coefficients of the investigated pharmaceuticals range from 4 (antipyrine) to 1250 (diclofenac), and are related to the hydrophobicity of the compound. Enrichment of these pharmaceuticals in the silicone rod is lower than for other compound classes (chlorinated and polycyclic hydrocarbons).

Antipyrine↗

PubMed2006

Prediction of the sorption of organic compounds into soil organic matter from molecular structure.

A new model to estimate the soil-water partition coefficient of non-ionic organic compounds normalized to soil organic carbon, Koc, from the two-dimensional molecular structure is presented. Literature data of log Koc for 571 organic chemicals were fitted to 29 parameters with a squared correlation coefficient r2 of 0.852 and a standard error of 0.469 log units. The application domain includes the atom types C, H, N, O, P, S, F, Cl, and Br in various important compound classes. The multilinear model contains the variables molecular weight, bond connectivity, molecular E-state, an indicator for nonpolar and weakly polar compounds, and 24 fragment corrections representing polar groups. The prediction capability is evaluated through an initial two-step development using an 80%:20% split of the data into training and prediction, cross-validation, permutation, and application to three external data sets. The discussion includes separate analyses for subsets of H-bond donors and acceptors as well as for nonpolar and weakly polar compounds. Comparison with existing models including linear solvation energy relationships illustrates the superiority of the new model.

Absorption↗

PubMed2006

Rapid semi-continuous calibration and field test of membrane-enclosed silicone collector as passive water sampler.

The new membrane-enclosed silicone collector (MESCO) was, in two different configurations with respect to the thickness of low-density polyethylene membrane used, subject to serial batch extraction tests to obtain (preliminary) sampling rates for estimating water concentrations of selected chlorinated organic compounds and polycyclic aromatic hydrocarbons. This rapid calibration procedure is simple to implement compared to experiments in a flow-through apparatus and yielded reasonable sampling rates in the range of 50 microL-2 mL per hour for the compounds tested. The new MESCO formats were also exposed for 28 days in the polluted creek to test their field performance. For priority contaminants of special interest, alpha-hexachlorocyclohexane and hexachlorobenzene, the time-weighted average concentrations derived from the freshly calibrated sampling devices agree well with those obtained by conventional water analysis of spot samples.

Calibration↗

PubMed2006

Comparative application of solid-phase microextraction fibre assemblies and semi-permeable membrane devices as passive air samplers for semi-volatile chlorinated organic compounds. A case study on the landfill "Grube Antonie" in Bitterfeld, Germany.

Solid phase microextraction (SPME) fibres coated with Carbowax/divinylbenzene and semi-permeable membrane devices (SPMDs) of standard configuration were used to obtain time-weighted average (TWA) field air concentrations of selected chlorinated semi-volatile compounds on a landfill, where large amounts of lindane by-products were deposited, together with other hazardous chemical residues in the past. Additionally, spot sampling with SPME fibres was performed to identify the emission hotspot and sampling rates were determined/predicted for the substances of interest. Both samplers yield comparable TWA air concentrations of lindane and its isomers and of DDT with its metabolites and gain in certainty about the landfill as remaining source of air pollution with these compounds in the region. Both SPME fibres and SPMDs (respective their modifications) can be recommended as sampling tools in process studies and larger air monitoring programmes. However, further calibration studies and field tests are necessary to obtain reliable sampling rates for a wider range of semi-volatile compounds.

Air Pollutants↗

PubMed2006

Acute to chronic ratios in aquatic toxicity--variation across trophic levels and relationship with chemical structure.

For fish, daphnids, and algae, acute to chronic ratios (ACRs) have been determined from experimental data regarding new and existing chemicals. Only test results in accord with the European Union Technical Guidance Document (TGD) and validated by authorities were considered. Whereas the median ACRs of 10.5 (fish), 7.0 (daphnids), and 5.4 (algae) are well below the ACR safety factor of 100 as implied by the TGD, individual ACRs vary considerably and go up to 4400. The results suggest that a safety factor of 100 is not protective for all chemicals and trophic levels. Neither a correlation between ACR and baseline toxicity as modeled through the logarithmic octanol-water partition coefficient nor an ACR correlation across trophic levels exists. Narcosis is associated with a preference for a low ACR; nevertheless, low ACRs are frequently obtained for nonnarcotics. Analysis of chemical structures led to the derivation of structural alerts to identify compounds with a significantly increased potential for a high ACR, which may prove to be useful in setting test priorities. At present, however, life-cycle tests are the only way to conservatively predict long-term toxicity.

Animals↗

PubMed2005

Prediction of the temperature dependency of Henry's law constant from chemical structure.

A new model to estimate the temperature dependency of Henry's law constant in water for organic compounds from the two-dimensional structure is presented. Air/water partition enthalpies of 456 chemicals were fitted to 46 substructural parameters with a squared correlation coefficient r2 of 0.81 and a standard error of 7.1 kJ/mol. The compound set covers various organic compound classes with the atom types C, H, N, O, F, Cl, Br, I, and S. Application of the model together with experimental data for 25 degrees C to a set of 462 compounds with 2119 experimental Henry's law constants at temperatures below 20 degrees C yields a predictive squared correlation coefficient q2 of 0.99 and a standard error of 0.21 logarithmic units. The prediction capability is further evaluated using cross validation and permutation.

Algorithms↗

PubMed2005

Modeling photoinduced algal toxicity of polycyclic aromatic hydrocarbons.

The influence of light conditions on the toxicity of polycyclic aromatic hydrocarbons (PAHs) to different organisms has long been recognized. The aim of this study was to investigate whether previously proposed models can be used to qualitatively and quantitatively predict photoinduced toxicity to the green algae Scenedesmus vacuolatus. For this purpose 14 different PAH compounds were tested under three different light conditions for their effects on the algae reproduction. Illumination conditions comprised standard algae growth light, simulated sunlight aiming to mimic environmental light conditions, and UV-filtered light in order to minimize light influence on PAH toxicity. Models proposed for the prediction of photoinduced toxicity were modified in order to account for different exposure conditions and toxic endpoints used in the bioassay. The results of this study show that the gap between the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) proposed as an indication for photoinduced toxicity to Daphnia magna can be used as a qualitative indication of a potential photoinduced toxicity to the green algae Scenedesmus vacuolatus. The impact of light conditions on PAH toxicity can be quantified by a linear model which allows the estimation of the ED50 of each compound from the amount of absorbed photons and an empirically determined relative phototoxic efficacy value of the compound.

Chlorophyta↗

PubMed2005

Indirect determination of low vapour pressures using solid-phase microextraction--application to tetrachlorobenzenes and tetrachlorobenzyltoluenes.

There is still a gap of reliable vapour pressure data at ambient temperature for low volatile organic substances due to the difficult and time-consuming determination using the classical methods. Static headspace extraction with a solid-phase microextraction (SPME) fibre in combination with gas chromatographic analysis provides an inexpensive tool for the indirect determination of low vapour pressures down to 10(-5) Pa. The procedure consists of two steps: (a) exposure of SPME fibre in the headspace above the test chemical over minutes to hours and (b) desorption and quantification of extracted amount. The calibration was performed using low volatile reference substances with well-known vapour pressures. A good correlation was found between substance uptakes of SPME fibre and vapour pressures. The method was applied, e.g. to tetrachlorobenzenes and to selected tetrachlorobenzyltoluenes with questionable vapour pressures. We obtained values between 0.98 and 13.5 Pa for the former and results between 0.13 and 0.68 mPa for the latter group of congeners. The scope of the method can be extended to substances with even lower vapour pressures, provided that reliable reference data are available.

Calibration↗

PubMed2005

Structural alerts--a new classification model to discriminate excess toxicity from narcotic effect levels of organic compounds in the acute daphnid assay.

Quantitative and qualitative structure-activity relationships (QSARs) have a great potential to support the risk assessment of chemicals, provided there are tools available that allow evaluation of the suitability of QSARs for the compounds of interest. In this context, a pragmatic approach is to discriminate excess toxicity from narcotic effect levels, because the latter can be estimated from QSARs and thus have a low priority for experimental testing. To develop a respective scheme for the acute daphnid toxicity as one of the primary ecotoxicological endpoints, 1067 acute toxicity data entries for 380 chemicals involving the daphnid species Daphnia magna were taken from the on-line literature, and quality checks such as water solubility were employed to eliminate apparently odd data entries. For 36 known narcotics with LC50 values referring to D. magna, a reference baseline QSAR is derived. Compounds with LC50 values above a certain threshold defined relative to their predicted baseline toxicity are classified as exerting excess toxicity. Three simple discrimination schemes are presented that enable the identification of excess toxicity from structural alerts based on the presence or absence of certain heteroatoms and their chemical functionality. Moreover, a two-step classification approach is introduced that enables a prioritization of organic compounds with respect to their need for experimental testing. The discussion includes reaction mechanisms that may explain the association of structural alerts with excess toxicity, a comparison with predictions derived from mode of action-based classification schemes, and a statistical analysis of the discrimination performance in terms of detailed contingency table statistics.

Animal Testing Alternatives↗

PubMed2005

Algal toxicity of nitrobenzenes: combined effect analysis as a pharmacological probe for similar modes of interaction.

An analysis regarding the effects of the mixture toxicity of different nitrobenzenes on the reproduction of the green alga Scenedesmus vacuolatus was undertaken using the concepts of concentration addition and response addition. Using lipophilicity-based quantitative structure-activity relationship (QSAR) modeling for nitrobenzenes, the assumption is held that mononitrobenzenes may exert narcotic effects as a common type of action, whereas dinitrobenzenes show a somewhat greater toxicity. From the literature, QSARs based on quantum chemical parameters suggest that some mononitrobenzenes may be effective through additional other modes of action. The toxicity of a mixture of 14 nitrobenzenes clearly exceeds the predicted combined effects, as expected for the sum of toxic units from a uniform narcotic mode of action. Moreover, the observed combined effect is smaller than that predicted from similarly acting compounds calculated on the basis of the parameterized dose-response functions using concentration addition. Further modeling of the combined effect, joining the models of concentration addition for components with anticipated similar modes of action and of response addition for those with independent action, led us to propose that not all nitrobenzenes follow the same mode of action. This idea is in line with the hypothesis derived from quantum chemical QSAR considerations. Most interestingly, the methodology introduced here uses combined effect analysis as a pharmacological probe to test for similarity in the mode of action of mixture components.

Animals↗

PubMed2003

Polychlorinated naphthalenes in sediments from the industrial region of Bitterfeld.

Bitterfeld (Germany) was a major site of chemical production in the former German Democratic Republic with chloralkali electrolysis as the basic process. Effluents were dumped via the creek Spittelwasser into the rivers Mulde and Elbe. Despite the fact that the chloralkali industry is known as a possible source of polychlorinated naphthalenes (PCNs), to date no data about PCN pollution in the region of Bitterfeld and downstream regions are available. Therefore, sediments of the creek Spittelwasser were isomer-specifically analysed for penta-, hexa- and heptachlorinated naphthalenes using GC/MS. Concentrations of 880, 543 and 1120 ng/g dry weight were found, respectively. The isomer pattern suggests chloralkali industry as the major source of PCN contamination. Because of their toxicological relevance we suggest to include PCNs into monitoring and risk assessment programs of the rivers Mulde and Elbe downstream of Bitterfeld.

Chemical Industry↗

PubMed2003

Stepwise discrimination between four modes of toxic action of phenols in the Tetrahymena pyriformis assay.

For a set of 220 phenols with literature data on their toxicity and associated mode of action (MOA) toward the ciliate Tetrahymena pyriformis, a stepwise classification scheme was developed that allows the identification of four MOAs from molecular hydrophobicity and AM1-based quantum chemical descriptors, employing linear discriminant analysis or binary logistic regression. Taking the AM1 lowest unoccupied molecular orbital energy as the only parameter, an initial separation of polar narcotics and proelectrophiles from oxidative uncouplers and soft electrophiles is correct to 97%, and for the subsequent discrimination between polar narcotics and proelectrophiles as well as between oxidative uncouplers and soft electrophiles, 99 and 98% correct classifications are achieved using three and two molecular descriptors, respectively. The results are discussed in terms of detailed contingency table statistics and with respect to relationships between molecular descriptors and mechanisms of toxicity. Statistical model evaluation includes simulated external validation employing complementary subset models.

Animals↗

PubMed2003

Mixture toxicity and its modeling by quantitative structure-activity relationships.

Environmental contaminants are frequently encountered as mixtures, and the behavior of chemicals in a mixture may not correspond to that predicted from data on the pure compounds. This paper reviews current quantitative structure-activity relationship (QSAR) methodology for the analysis of mixture toxicity. Interactions of components in a mixture can cause complex and substantial changes in the apparent properties of its constituents, resulting in synergistic or antagonistic effects as opposed to the ideal reference case of additive behavior: concentration addition (CA) and independent action (IA) are two prominent reference models for the evaluation of joint activity, and both have mechanistic support from pharmacology. After discussing graphical tools for analyzing binary mixtures and joint effect indices suitable also for multicomponent mixtures, water solubility and hydrophobicity of mixtures are analyzed with respect to the property contributions of the individual components. With the former, small but significant deviations from ideal behavior are observed even for simple organics, whereas in the case of low concentrations, mixture hydrophobicity was found to agree approximately with the fractional contributions of the components. A variety of studies suggest that mixtures of compounds exerting only one (narcotic or specific) mode of action can be modeled satisfactorily by assuming CA, whereas the interaction of differently acting compounds tends to yield a less than CA joint activity. The QSARs have been used to predict concentrations of components in mixtures from joint effects and defined mixture ratios and have been developed to predict narcotic-type mixture toxicity from molecular descriptors that are calculated as composite properties according to the fractional concentrations of the mixture components. In the case of ionogenic compounds, initial results suggest that CA may serve as a first-order approximation for the joint effect of un-ionized and ionized compound portions.

Animals↗

PubMed2003

Quantitative structure-property relationships for predicting Henry's law constant from molecular structure.

Various models are available for the prediction of Henry's law constant (H) or the air-water partition coefficient (Kaw), its dimensionless counterpart. Incremental methods are based on structural features such as atom types, bond types, and local structural environments; other regression models employ physicochemical properties, structural descriptors such as connectivity indices, and descriptors reflecting the electronic structure. There are also methods to calculate H from the ratio of vapor pressure (p(v)) and water solubility (S(w)) that in turn can be estimated from molecular structure, and quantum chemical continuum-solvation models to predict H via the solvation-free energy (deltaG(s)). This review is confined to methods that calculate H from molecular structure without experimental information and covers more than 40 methods published in the last 26 years. For a subset of eight incremental methods and four continuum-solvation models, a comparative analysis of their prediction performance is made using a test set of 700 compounds that includes a significant number of more complex and drug-like chemical structures. The results reveal substantial differences in the application range as well as in the prediction capability, a general decrease in prediction performance with decreasing H, and surprisingly large individual prediction errors, which are particularly striking for some quantum chemical schemes. The overall best-performing method appears to be the bond contribution method as implemented in the HENRYWIN software package, yielding a predictive squared correlation coefficient (q2) of 0.87 and a standard error of 1.03 log units for the test set.

Chemical Phenomena↗

PubMed2003

Identification of toxic products of anthracene photomodification in simulated sunlight.

Currently, the evidence of a rapid photomodification of anthracene under sunlight resulting in enhanced toxicity exists; however, the chemical causes of toxicity are still unknown. The present study aimed at filling this gap by irradiation of an anthracene suspension with simulated sunlight and subsequent effect-directed fractionation and analysis of toxic products with respect to the inhibition of bacterial energy metabolism of Vibrio fischeri, reproduction of the green algae Scenedesmus vacuolatus, and genotoxicity in the umuC test. Algal toxicity of anthracene was hardly modified by irradiation prior to testing and distributed over all fractions with emphasis on the fractions containing anthracene-9,10-dione and a photometabolite suggested to be 10-hydroxyanthrone. Bacterial toxicity and genotoxicity in contrast emerged only when anthracene was irradiated. Anthracene-1,4-dione, a so-far-unknown trace photometabolite, was identified as a very potent toxicant dominating the toxicity of photomodified anthracene to V. fischeri. In genotoxic fractions, 1-hydroxyanthracene-9,10-dione and 1,4-dihydroxyanthracene-9,10-dione were identified and confirmed as genotoxicants. The results stress the potential of effect-directed analysis approaches in contrast to mere chemical analysis in studies aiming at toxicologically relevant photomodified substances.

Anthracenes↗

PubMed2002

Calibrating the uptake kinetics of semipermeable membrane devices in water: impact of hydrodynamics.

The use of lipid-containing semipermeable membrane devices (SPMDs) is becoming commonplace, but the potential effects of environmental variables affecting the accumulation of contaminants into SPMDs had not been characterized sufficiently, yet. To characterize the effect of hydrodynamic conditions on the contaminant uptake kinetics, accumulation of pentachlorobenzene, hexachlorobenzene, and hexachlorocyclohexane isomers from water into SPMD was studied at various water flow rates. The accumulation kinetics of hydrophobic compounds (log Kow > 4) are governed by the aqueous boundary layer in linear flow velocity range from 0.06 to 0.28 cm s(-1) and sensitive to slight changes in flow rate. The effect of flow velocity on the exchange kinetics increases with increasing hydrophobicity. Under faster, but still laminar flow conditions (0.28-1.14 cm s(-1)), the sensitivity to changes in flow decreases to a nonsignificant level for the substances under consideration. The results of this study confirm that the use of the laboratory-derived calibration data for estimation of analyte concentrations in the ambient environment is limited unless flow-sensitive performance reference compounds are used.

Calibration↗

PubMed2002

Effects of trichloroacetic acid on the nitrogen metabolism of Pinus sylvestris--a 13C/15N tracer study.

Trichloroacetic acid (TCA) can be found in various environmental compartments like air, rain and plants all over the world. It is assumed that TCA is an atmospheric degradation product of volatile chloroorganic hydrocarbons. The herbicide effect of TCA in higher concentrations is well known, but not much is known about the phytotoxic effects in environmentally relevant concentrations. It can be shown in this study by using the 13C/15N stable isotope tracer technique that [13C]TCA is taken up by roots of two-year-old seedlings of Pinus sylvestris L. and transported into the needles. At the same time the effect of the substance on nitrogen metabolism can be analyzed by measuring the incorporation of 15NO3- into different nitrogen fractions of the plant. The more [13C]TCA incorporation, the higher the synthesis of 15N labelled amino acids and proteins is. These effects on the nitrogen metabolism are probably based on the activation of stress- and detoxification metabolism. It has to be assumed that there is an influence on N metabolism of Pinus sylvestris caused by the deposition of environmentally relevant TCA concentrations.

Biological Availability↗

PubMed2002

Effect-directed fractionation and identification of cytochrome p4501A-inducing halogenated aromatic hydrocarbons in a contaminated sediment.

On the basis of a new fractionation method combined with in vitro ethoxyresorufin-O-deethylase (EROD) induction in a rainbow trout liver cell line (RTL-W1) and chemical analysis, halogenated aromatic hydrocarbons with dioxin-like activity were identified in a sediment extract from Bitterfeld, Germany. The fractionation method allowed a separation of different nonplanar and coplanar polychlorinated biphenyls (PCBs), polychlorinated naphthalenes (PCNs), dibenzo-p-dioxins (PCDDs), and dibenzofurans (PCDFs) with different degrees of chlorination. The dioxin-like activity at the investigated site could be quantitatively assigned to PCDD/Fs. Both PCBs and PCNs could be excluded as the cause of the measured effects on the basis of the fractionation procedure and bioanalytical results. Thus, the method allowed the chemical analysis to focus on PCDD/Fs, with significant reduction of the analytical expense. The EROD-induction potency of sediment-extract fractions was quantified, and toxicants were confirmed by the application of induction equivalent quantities on the basis of fixed-effect-level concentrations that exhibit 15% of the maximum induction by 2,3,7,8-tetrachlorodibenzo-p-dioxin. This approach was designed to minimize methodological limitations due to superimposing inhibitory effects.

Animals↗