Biomedical subjects

Giovanna Barbarella

Publications and source records attributed to Giovanna Barbarella.

12 recordsLinked to original sources

PubMed2006

Synthesis, multiphase characterization, and helicity control in chiral DACH-linked oligothiophenes.

A new class of chiral oligothiophenes is described. Mono-, bi-, ter-, and quarterthiophenes have been linked to enantiopure trans-1,2-cyclohexanediamine (DACH) via diamino or diimino moieties. The stereochemistry of DACH, the type of linker, and oligothiophene size determine the conformational flexibility of these molecules and consequently their molecular and supramolecular helicity in solution and in the solid state. The case of diaminobis(bithiophene), which inverts helicity and shows chiral amplification in the transition from solution to film, is described in detail. Based on the combined use of circular dichroism in solution and in the solid state, single-crystal/thin-film X-ray diffraction, and polarized optical microscopy, a working mechanism has been proposed to explain this unexpected behavior.

Journal Article↗

PubMed2006

Controlling stereochemical outcomes of asymmetric processes by catalyst remote molecular functionalizations: chiral diamino-oligothiophenes (DATs) as ligands in asymmetric catalysis.

The synthesis, characterization, and structure-guided application of a new class of highly versatile chiral C(2)-symmetric diamine-oligothiophene ligands in Pd-catalyzed asymmetric transformations are presented. Experimental investigations of the intimate role of pendant pi-conjugate oligothiophenes in determining the catalytic activity of the corresponding chiral Pd complexes are described. Their unusual behavior opens up new routes toward the logical design of finely tuned organometallic catalysts by remote structural functionalizations.

Catalysis↗

PubMed2006

Ordered assembly of alpha-quinquethiophene on a copper oxide nanotemplate.

The organic semiconductor alpha-quinquethiophene (T5) is used as the active layer in organic field-effect transistors. We have investigated the adsorption of T5 on the (110) surface of copper and on the CuO nanotemplate formed by the high-temperature exposure of Cu(110) to molecular oxygen. The results were obtained with high-resolution scanning tunneling microscopy (STM) under ultra-high-vacuum (UHV) conditions. The adsorption of T5 on copper is an important model system because it mimics the active-layer-electrode interface in organic devices. The molecules were observed to adsorb onto both the pristine Cu(110) surface and the CuO nanotemplate, showing a greater affinity for the pristine copper surface. Surprisingly, however, the T5 molecules assembled with a much higher degree of long-range order on the oxygen-passivated portion of the surface.

Adsorption↗

PubMed2006

Influence of the side functionalization of quinquethiophene-S,S-dioxides on the morphology of blends with poly(3-hexylthiophene): scanning force microscopy reveals.

Blends of an electron donor, i.e. a regioregular poly(3-hexylthiophene) (P3HT), with electron acceptors, a series of soluble quinquethiophene-S,S-dioxides (T5Os) bearing different alkyl side groups were self-assembled at surfaces. Scanning Force Microscopy (SFM) studies revealed that while the T5O symmetrically functionalized with two hexyl groups in the central thiophene (1) self-organizes into micrometer sized crystals embedded in a grainy matrix of P3HT, by substituting the central thiophene of 1 with one hexyl and one methyl unit (2) smaller and less anisotropic crystals of the acceptor having a sub-micrometer scale size were formed. The generation of these crystals is due to the joint effect of different non-covalent intermolecular interactions between the T5Os that self-segregate from the P3HT. By derivatizing the compound 1 with cyclo-hexyl moieties in the four external thiophenes molecule 3 was obtained. Such system was found to assemble into grainy disordered structures when co-deposited with P3HT, providing evidence for the absence of a phase segregation between the two components. Generally, the self-assembly at surfaces is governed by the interplay of intramolecular as well as intermolecular and interfacial interactions. In the present case, the cyclo-hexyl side groups in 3 both induce an intramolecular loss of planarity of the thiophene rings and hinders intermolecular interactions, reducing the tendency of the molecules to self-associate forming large crystals, whereas the symmetrical functionalization of the two central thiophenes with hexyl chains favours the crystallization of the T5O. The reported results demonstrate that subtle differences in the chemical functionalization can lead to different types of molecular architectures at surfaces. This is of importance since controlling the self-organization of pi-conjugated molecules at surfaces towards pre-programmed assemblies is a viable approach to enhance their electronic and luminescent properties, which should help to improve the performance of organic devices.

Crystallization↗

PubMed2005

Emission properties of printed organic semiconductor lasers.

We investigated the emission properties of a distributed-feedback resonator based on an organic semiconductor patterned by a novel printing technology. We observed the peak splitting of the photonic bandstructure of the periodic grating and extracted the effective refractive index of the outcoupled guided modes. The laser works at the second diffraction order, exhibiting narrow single-mode emission at 637 nm, with a threshold as low as 37 microJ/cm2. The results suggest that direct printing is a promising fabrication technique for optically confined integrated optoelectronics.

Journal Article↗

PubMed2003

Solid-state supramolecular organization, established directly from powder diffraction data, and photoluminescence efficiency of rigid-core oligothiophene-S,S-dioxides.

The "rigid-core" material 3,5-dimethyl-2,3'-bis(3-methylthiophene)-dithieno[3,2-b:',3'-d]thiophene-4,4-dioxide (DTTOMe4) has the highest photoluminescence ever reported for thiophene-based molecules in the solid state. We report the structure of this material, determined directly from powder X-ray diffraction data using the Genetic Algorithm method for structure solution, followed by Rietveld refinement, and the structural properties are discussed in relation to the structures of the corresponding subsystems DTTO and DTTOMe. While the crystal structures of the latter compounds contain cofacial dimers, the crystal structure of DTTOMe4 comprises layers of molecules aligned in an antiparallel fashion. Intermediate neglect of differential overlap with single configuration interaction (INDO/SCI) calculations on the intermolecular interactions in the three crystal structures show that the different solid-state photoluminescence efficiencies of DTTOMe4, DTTOMe, and DTTO cannot be correlated with the different types of dipole-dipole alignment in the solid state. Instead, photoluminescence efficiencies correlate well with the rate of formation of nonradiatively decaying charge-transfer pairs upon photoexcitation. Because of larger intermolecular distances in DTTOMe4, the photoluminescence is less effectively quenched by charge-transfer processes than in DTTOMe and DTTO.

Journal Article↗

PubMed2003

Multiscale self-organization of the organic semiconductor alpha-quinquethiophene.

We show that thin films grown by vacuum sublimation, or formed by melted powders, of semiconductor alpha-quinquethiophene (T5) exhibit a hierarchical self-affinity organization that spans scales from tens of nanometers to hundreds of micrometers. T5 organization was investigated by X-ray diffraction (XRD), atomic force microscopy (AFM), and optical microscopy. XRD showed that vacuum-evaporated T5 films were characterized by a preferred orientation of the h00 planes parallel to the glass substrate. Melting of the films followed by rapid quenching to room temperature led to the formation of micrometer-sized, single-crystal-like structures, characterized by uniaxially aligned stripes. XRD proved that the melting-quenching process enhanced molecular ordering and increased the size of domains with the molecule's long axes tilted by about 65 degrees with respect to the substrate plane and piled up side-by-side along parallel columns. AFM measurements on the melt-quenched structures showed that a hierarchical architecture was built by reiteration across multiple length scales of the same recurring motif. Because of the tendency of T5 to form highly crystalline vacuum-evaporated thin films, a field-effect hole mobility comparable to state-of-the-art FET mobility of alpha-sexithiophene films was reached, without any attempt to optimize deposition conditions.

Journal Article↗

PubMed2003

Rigid-core fluorescent oligothiophene-S,S-dioxide isothiocyanates. Synthesis, optical characterization, and conjugation to monoclonal antibodies.

In this paper we report the synthesis of a new class of fluorescent thiophene-based isothiocyanates containing a 3,5-disubstituted dithieno[3,2-b:2',3'-d]thiophene-4,4-dioxide moiety as the rigid core, using the palladium-catalyzed cross-coupling reaction of aryl stannanes with aryl bromides (Stille coupling). By changing the molecular structure through the progressive addition of thienylene or phenylene units, light emission from blue to orange was obtained. Photoluminescence quantum yields ranged from 0.65 to 0.90 for blue and green light emitters to 0.10-0.35 for yellow and orange ones. Optically and chemically stable fluorescent bioconjugates were prepared by spontaneous reaction of the isothiocyanates with monoclonal antibodies anti-CD3 and anti-CD8 in slightly basic solutions.

Antibodies, Monoclonal↗

PubMed2002

Solvent-free, microwave-assisted synthesis of thiophene oligomers via Suzuki coupling.

The purpose of this study was to obtain a rapid, efficient, and environmentally friendly methodology for the synthesis of highly pure thiophene oligomers. The solvent-free, microwave-assisted coupling of thienyl boronic acids and esters with thienyl bromides, using aluminum oxide as the solid support, allowed us to rapidly check the reaction trends on changing times, temperature, catalyst, and base and easily optimize the experimental conditions to obtain the targeted product in fair amounts. This procedure offers a novel, general, and very rapid route to the preparation of soluble thiophene oligomers. Thus, for example, quaterthiophene was obtained in 6 min by reaction of 2-bromo-2,2'-bithiophene with bis(pinacolato)diboron (isolated yield 65%), whereas quinquethiophene was obtained in 11 min by reaction of dibromoterthiophene with thienylboronic acid (isolated yield 74%). The synthesis of new chiral 2,2'-bithiophenes is reported. The detailed analysis of the byproducts of some reactions allowed us to elucidate a few aspects of reaction mechanisms. While the use of microwaves proved to be very convenient for the coupling between conventional thienyl moieties, the same was not true for the coupling of thienyl rings to thienyl-S,S-dioxide moieties. Indeed, in this case, the targeted product was obtained in low yields because of the competitive, accelerated, Diels-Alder reaction that affords a variety of condensation products.

Journal Article↗

PubMed2002

Oligothiophene isothiocyanates as fluorescent markers.

Thiophene oligomers have been studied so far mainly for their semiconductor and charge-transport properties. However, these compounds are also highly fluorescent and soluble. Solubility and fluorescence frequencies and efficiencies can be tailored by means of appropriate functionalization of the aromatic backbone. Functionalization with the isothiocyanate group (-N=C=S) allows these molecules to form covalent bonds with NH2-containing biomolecules and give rise to optically and chemically very stable fluorescent bioconjugates. Examples of photostable conjugates formed with monoclonal antibodies are reported.

Antibodies, Monoclonal↗

PubMed1996

Regioselective Oligomerization of 3-(Alkylsulfanyl)thiophenes with Ferric Chloride.

The action of FeCl(3) on 3-(alkylsulfanyl)thiophenes (3-(alkylthio)thiophenes) leads to the one-step formation of regioregular alpha-conjugated oligothiophenes, from trimer to octamer, depending on the solvent used and on the length of the alkyl chain. The regiochemistry of these oligomers is characterized by one inner head-to-head linkage between adjacent rings and by a variable number of lateral head-to-tail junctions. The reaction of ferric chloride with the head-to-head and head-to-tail bis(methylsulfanyl)-2,2'-bithiophenes gives the corresponding tetramers, while the reaction with the tail-to-tail counterpart affords a high molecular weight insoluble material. With the aid of theoretical calculations, these results are interpreted on the basis of the joint effects of the orienting power of the substituents and of the stability of the radical cations formed during the oxidative process.

Journal Article↗

PubMedDate not supplied

Bright oligothiophene N-succinimidyl esters for efficient fluorescent labeling of proteins and oligonucleotides.

The synthesis of multicolor fluorescent oligothiophene N-succinimidyl esters (TSEs) is reported, and their optical properties are discussed with the aid of ab initio calculations. The esters were coupled to proteins and to 3'-amino-modified oligonucleotides in mild conditions and with similar modalities. A comparative study of the bioconjugate of IgG1 anti-CD3 antibody labeled with a blue fluorescent TSE and with fluorescein isothiocyanate (FITC) is reported, showing that the former achieves higher photoluminescence intensity and optical stability than the latter. Fluorescence resonance energy transfer experiments with TSE-labeled oligonucleotides and examples of cellular imaging via TSE-labeled proteins are reported.

Antibodies, Monoclonal↗