PubMed HealthSearch

Biomedical subjects

H Ahlfeldt

Publications and source records attributed to H Ahlfeldt.

17 recordsLinked to original sources

Database and knowledge base integration in decision support systems.

Since decision support systems (DSS) in medicine often are linked to clinical databases it is important to find methods that facilitate the work for DSS developers to implement database queries in the knowledge base (KB). This paper presents a method for linking clinical databases to a KB with Arden Syntax modules. The method is based on a query meta database including templates for SQL queries. During knowledge module authoring the medical expert only refers to a code in the query meta database. Our method uses standard tools so it can be implemented on different platforms and linked to different clinical databases.

Artificial Intelligence

Database and knowledge base integration--a data mapping method for Arden Syntax knowledge modules.

One of the most important categories of decision-support systems in medicine are data driven systems where the inference engine is linked to a database. It is, therefore, important to find methods that facilitate the implementation of database queries referred to in the knowledge modules. A method is described for linking clinical databases to a knowledge base with Arden Syntax modules. The method is based on a query meta-database including templates for SQL queries which is maintained by a database administrator. During knowledge module authoring the medical expert refers only to a code in the query meta-database; no knowledge is needed about the database model or the naming of attributes and relations. The method uses standard tools, such as C+2 and ODBC, which makes it possible to implement the method at many platforms and to link to different clinical databases in a standardized way.

Databases, Factual

Machine learning to support diagnostics in the domain of asymptomatic liver disease.

Machine learning procedures, in unsupervised and supervised manner, can enable their users to achieve knowledge hardly comprehensible by even the best experts. This is true also if the clinical knowledge has been carefully assembled in a prospective way. A data set including 165 patients with elevated routine laboratory tests was extensively studied according to clinical history, laboratory profile and liver biopsy. Unsupervised learning by Kohonen feature map disclosed 4 groups of patients: the largest one with no or slight histopathological changes (116) and three smaller, more homogenous, with more diseased patients. Standardized histopathological scorings of the liver specimens defined patients into two groups. Fifty-eight of them were, according to the analysis, recommended for a liver biopsy, due to more severe degrees of inflammation and fibrosis. One-hundred and seven of the patients, in whom liver biopsy was retrospectively considered unnecessary, had only minor degrees of inflammation, fibrosis and/or steatosis. Supervised learning, using the inductive systems based on Quinlan's ID3 and CART algorithms, extracted knowledge in the form of decision trees. This approach could define a need for biopsy either with a very few significant findings or by pathways containing quotients and multiplications of the different basic items. These procedures were analyzed and compared for their theoretical and applicative performances. The cluster and Fischerian discriminant analyses were performed in order to compare the classification performance. The medical appropriateness of the obtained results is satisfying, therefore decision support systems, outlined in this study, should be evaluated in wider clinical practice. To achieve this goal, an example of a Medical Logical Module (MLM), based on the Arden Syntax, is given.

Adult

Experiences from the use of data-driven decision support in different environments.

The paper reports experiences from the implementation and use of data-driven decision support based on the Arden Syntax in three different environments: in a health-care centre, in a clinical laboratory, and in a research department. Methods and tools used for realization of decision support systems (DSSs) are shortly presented, and integration aspects of the DSS with running clinical applications and existing patient databases are discussed. The application areas are also described, together with validation procedures for the developed knowledge modules.

Artificial Intelligence

Integration of data driven decision support into the HELIOS environment.

The development of large-scale, clinically accepted decision support systems (DSS) calls for powerful and commonly available methods and tools for knowledge acquisition, system realisation, and knowledge base maintenance. The paper addresses problems associated with the integration of knowledge-based systems within the clinical setting with special reference to (i) data driven decision support, (ii) the Arden Syntax as a knowledge representation format and, (iii) the HELIOS software engineering environment. Architecture of a DSS based on Arden Syntax and its integration in the HELIOS environment are presented. Realisation of the DSS is discussed in relation to client-server architecture and object-oriented databases, which are essential concepts of the HELIOS environment. Sharability and reusability of the knowledge, together with commonality of used software tools are also discussed.

Database Management Systems

Data driven medical decision support based on Arden Syntax within the HELIOS environment.

Methods and tools for development of data driven decision support systems (DSSs) is an integral part of the HELIOS software engineering environment. The DSS development environment includes tools for knowledge acquisition and knowledge base construction, provides trigger mechanisms for evocation of the knowledge base and an inference engine for execution control of appropriate parts of the knowledge base during run-time. The tools are part of the HELIOS service components and are integrated within the HELIOS communication framework. The work is based on the Arden Syntax, a standard for knowledge representation, allowing medical logic modules (MLMs) to be shared and transferred between institutions.

Artificial Intelligence

Pre-compiling medical logic modules into C++ in building medical decision support systems.

Development of medical knowledge bases is a time-consuming process, and no single medical institution can develop medical knowledge bases covering all areas of medicine. The use of medical knowledge representation standards such as the Arden Syntax is an attempt to enhance the writability and readability of computer-stored knowledge and facilitate transfer and sharing among institutions. A method for the realisation of decision support systems based on knowledge formulated according to the Arden Syntax is presented. An essential tool in this process is a medical logic module (MLM) pre-compiler, translating MLMs into an object-oriented programming language, C++. Advantages of the C++ approach compared with other alternatives are discussed.

Artificial Intelligence

MultiLink--an intermediary system for multi-database access.

The design and implementation is described of MultiLink, a desktop system for direct enduser access to remote bibliographic information. The system is an application of a client-server technique based on a campuswide network, with the objective to assist end-users to accomplish the information--retrieval process by capturing knowledge and expertise for searches in query formulations. MultiLink, via intelligent interfaces, allows users to access several dozens of bibliographic databases. The application integrates regional, national and international resources, and brings library services to the user's desktop level.

Databases, Bibliographic

Distribution patterns of ventricular premature complexes in long-term electrocardiographic recordings and their usefulness in disclosing modulated parasystole.

Long-term electrocardiographic recordings from 25 patients with abundant ventricular premature complexes (VPCs) were screened with a computer program for sequences of interectopic intervals with the number of sinus beats consistent with manifest or concealed bigeminy/trigeminy. On average, 19.0% of VPCs in this patient series were followed by an uninterrupted sequence of greater than or equal to 10 interectopic intervals with concealed bigeminy. The corresponding figure for concealed trigeminy was 2.2%, for manifest bigeminy 9.6%, and for manifest trigeminy 0.8%. The longest sequence with concealed bigeminy comprised 149 interectopic intervals. The corresponding figure for concealed trigeminy was 135 interectopic intervals. The sequences of concealed bigeminy occurred at significantly lower heart rates than those of concealed trigeminy. These findings can be explained by the entrainment phenomena described in experimental models of modulation of a ventricular parasystolic focus across a zone of impaired conduction.

Adult

Deduction of biphasic phase response curves from ventricular parasystole.

The mechanisms behind ventricular premature beats may be divided into two main categories, reentry and modulated parasystole. Although it is relatively easy to distinguish among arrhythmia generating mechanisms on the cellular level, it is far more difficult in the clinic. Modulation of ventricular parasystole by sinus beats has been shown to result in a biphasic phase response curve. Two cases are reported where the deduction of such phase response curves from long-term ECG recordings is discussed and described as a stepwise procedure.

Aged

Deduction of triphasic phase response curves from ventricular parasystole.

Modulation of ventricular parasystole by sinus beats has been shown to result in a biphasic phase response curve. Some reports also indicate that the modulation effect could be described by a triphasic response with an early phase of acceleration, which would correspond to the supernormal phase of excitability. Two cases of such triphasic phase response curves are reported. The coexistence of ventricular couplets and parasystole is also discussed. The second beat of the couplet has often been explained by reentry or reflection, but could also be interpreted as due to supernormal modulation, resulting in an accelerated second ectopic response.

Aged

Teaching medical informatics to biomedical engineering students: experiences over 15 years.

The Departments of Biomedical Engineering and Medical Informatics at Linköping University in Sweden were established in 1972-1973. The main purpose was to develop and offer courses in medicine, biomedical engineering and medical informatics to students in electrical engineering and computer science, for a specialization in biomedical engineering and medical informatics. The courses total about 400 hours of scheduled study in the subjects of basic cell biology, basic medicine (terminology, anatomy, physiology), biomedical engineering and medical informatics. Laboratory applications of medical computing are mainly taught in biomedical engineering courses, whereas clinical information systems, knowledge based decision support and computer science aspects are included within the medical informatics courses.

Biomedical Engineering

Computer simulation of cardiac pacing.

A mathematical model of the cardiac conduction system, including external pacemakers, has been developed. The heart is modeled as a network in which the impulse propagation is described by differential equations; several arrhythmia-generating mechanisms, such as modulated parasystole, reflection, macro and micro re-entry and block, can be simulated. Different kinds of pacemaker modes have been incorporated in the model, thus making it possible to simulate the interaction between the heart and the pacemaker. The model can be tuned by the user according to electrophysiological data so that pacemaker programs can be tested under different underlying conditions. During a simulation, the program generates ECG signals and pacemaker diagnostic diagrams. This model can be used for training and testing, and also as a support system when searching for the optimal pacing therapy for a particular patient.

Computer Simulation

Computer simulation of cardiac arrhythmias.

A mathematical model of the cardiac conduction system has been developed. The mechanisms of cardiac arrhythmias are described mathematically, and the heart is modeled as a network, where each element is defined by a unique set of time parameters from the action potential. The mathematical description is separated from the network structure, thus making it possible to run the model with different network sizes. Simulated ECG curves are produced in each case. This model is especially suited for rhythm studies, and a variety of different cardiac arrhythmia mechanisms has been simulated such as reentry, reflection, modulated parasystole, and different kinds of block.

Action Potentials

Vestibulo-oculomotor disturbances in humans exposed to styrene.

Several reports indicate that disturbances of the vestibulo-oculomotor ability are a manifestation of the toxic action on the central nervous system exerted by some industrial solvents. The aim of the present investigation was to examine the vestibulo-oculomotor system during exposure to styrene, which is extensively used in the production of plastics. Healthy volunteers were exposed to styrene for one hour. Rotatory and optokinetic nystagmus, visual suppression as well as speed, latency and accuracy of saccades were tested before, during, and one hour after the exposure. The pulmonary uptake and the blood level of the solvent were continuously analysed by gas chromatography. The styrene blood concentration was equivalent to that which may well be reached after serveral hours of hard work in an industrial environment with a concentration of styrene within permitted limits. No spontaneous nystagmus appeared. The rotatory and optokinetic nystagmus was not influenced by styrene. However, the speed of the saccade was significantly enhanced. The visual suppression was disturbed, shown by an increased gain after styrene exposure. The experiments thus indicate that styrene given to healthy test persons induced disturbances, thus consistent with the theory that some organic solvents block the cerebellar inhibition of the vestibulo-oculomotor system.

Adult

Query-handling in MLM-based decision support systems.

Arden Syntax for Medical Logic Modules is a standard specification for creation and sharing of knowledge bases. The standard specification focuses on knowledge that can be represented as a set of independent Medical Logic Modules (MLMs) such as rules, formulas and protocols. The basic functions of an MLM are to retrieve patient data, manipulate the data, come to some decision, and possibly perform an action. All connections to the world outside an MLM are collected in the data-slot of the MLM. The institution specific parts of these connections are inside the notation of curly brackets ([]) to facilitate sharing of MLM between institutions. This paper focuses on some of the problems that occur in relation to Arden Syntax and connections to a patient database such as database queries. Problems related to possibilities of moving one or several module(s) are also discussed, with emphasis on database connections. As an example, an MLM based Decision Support System (DSS) developed at Linköping University is described.

Artificial Intelligence

Terminology support for development of sharable knowledge modules.

Lack of an agreed infrastructure for terminology is identified as one of the major barriers to interchange of knowledge modules and integration of knowledge bases with other clinical information systems. The goal of the GALEN project is to bridge this gap between different terminology systems through the construction of a terminology server, which is based on a rich conceptual model with mapping facilities to natural language expressions and coding schemas. The long term goal is to support communication between medical information systems. Arden Syntax is a standard format for the creation of knowledge modules, with sharability as one of the main objectives. Since Arden Syntax is based on a data-driven approach, the data items used need to be adapted to locally available terminology. The GALEN approach appears to be complementary to Arden Syntax and to the development of sharable knowledge modules. The major theme of this paper is utilization of the GALEN terminology server for knowledge module authoring. Two systems are presented, a knowledge base manager and a client to the terminology server, allowing the user to navigate in the semantic network and to import concept definitions and terms into the knowledge modules. The benefit of the terminology server, allowing the user to navigate in the semantic network and to import concept definitions and terms into the knowledge modules. The benefit of the terminology services is discussed.

Artificial Intelligence