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H Birkedal

Publications and source records attributed to H Birkedal.

6 recordsLinked to original sources
PubMed2001

N-Z-Pro-D-Leu using synchrotron radiation data from a very small crystal.

The crystal structure of the neuroactive artificial dipeptide N-benzyloxycarbonylprolyl-D-leucine, C(19)H(26)N(2)O(5), was solved using synchrotron radiation data collected on a very small crystal (20 x 20 x 380 microm). The molecules form hydrogen-bonded 2(1) helices. The acid carbonyl group does not participate in strong hydrogen bonds. This is interpreted as a consequence of close-packing requirements.

Crystallography, X-Ray↗
PubMed2001

Reduction of dioxygen by a dimanganese unit bonded inside a cavity provided by a pyrrole-based dinucleating ligand.

A novel class of dinucleating ligands has been introduced into manganese chemistry to study the reactivity of this metal towards dioxygen under strictly controlled conditions. Such N4 ligands combine some of the major peculiarities of tetradentate Schiff bases and the porphyrin skeleton. They are derived from the condensation between 2-pyrrolaldehyde and ethylenediamine or o-phenylenediamine, leading to pyrenH2 (LH2, 1), pyrophenH2 (L'H2, 2) and Me2pyrophenH2, (L"H2, 3), respectively. Their metallation with [Mn3-(Mes)6] (Mes = 2,4,6-trimethylphenyl) led to [Mn2L2] (4), [MnL'(thf)2] (5) and [MnL"(thf)2] (6). Complex 4 displays a double-stranded helical structure, while 5 and 6 are mononuclear complexes containing hexacoordinated metals. Regardless of their structure, complexes 5 and 6 behave in a similar manner to 4 in their reaction with dioxygen, namely, as a dimetallic unit inside a cavity defined by two dinucleating ligands. These reactions led to dinuclear MnIII/MnIV oxo-hydroxo derivatives, [Mn2L2(mu-O)(mu-OH)] (7), [Mn2L'2(mu-O)(mu-OH)] (8) and [Mn2L"2(mu-O)(mu-OH)] (9), in which the two Mn ions are strongly antiferromagnetically coupled [J = -53 (7), J = -64 (8), J = -60 cm(-1) (9)]. The crystal structure of 7 could only be solved with synchrotron radiation as the crystals diffracted very poorly and suffered from twisting and disorder. The formation of 7-9 has been proposed to occur through the formation of an intermediate dinuclear hydroperoxo species.

Journal Article↗
PubMed2000

Anharmonicity in anisotropic displacement parameters

A quasi-harmonic molecular-mean-field model for analyzing anharmonic temperature evolution of anisotropic displacement parameters is described. Anharmonic effects are taken into account through a Gruneisen-type temperature dependence of effective vibrational frequencies. The method is applied to neutron and X-ray diffraction data of hexamethylenetetramine measured between 15 and 298 K. The resulting Gruneisen parameters and other characteristics of molecular motion in the solid state agree well with those obtained from independent vibrational data. The analysis also suggests errors in the ADP's due to insufficient extinction corrections in the diffraction data.

Journal Article↗
PubMed1999

Phase-transition-induced twinning in the 1:1 adduct of hexamethylenetetramine and azelaic acid.

The title compound, C(6)H(12)N(4).C(9)H(16)O(4), undergoes several thermotropic phase transitions. The crystalline structure is layered, with sheets of azelaic acid linked to sheets of hexamethylenetetramine by hydrogen bonds. In the room-temperature phase, the azelaic acid molecules are disordered. By lowering the temperature, this disorder partially disappears. The ordering is clearly observed in reciprocal space where on the rods of diffuse scattering, present in the room-temperature phase, a series of superstructure reflections emerges. This phase transition leads to twin-lattice quasi-symmetry (TLQS) twinning. The structure of this twinned phase is explored in this paper. There are two orientational domains linked by a mirror plane which relates disordered orientations of the acid molecules above the phase transition. A single domain has space group P2_1/c. The structure has been solved and refined on the complete set of data to R(1) = 0.0469. The chains remain partially disordered, showing two acid groups with unequal population: the major form corresponding to a carboxylic acid and the minor to a carboxylate. The ordering of the structure, when going through the phase transition, is interpreted in terms of stabilization by C-H.O hydrogen bonding. A least-squares estimator of the twinning volume ratio is developed that gives an expression for the twinning ratio in terms of the intensities of nonoverlapping reflections. The twinning ratio obtained in the structure refinement compares very well with that obtained from this estimator.

Journal Article↗