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H Soltanian-Zadeh

Publications and source records attributed to H Soltanian-Zadeh.

At least 19 recordsLinked to original sources
PubMed2001

A three-dimensional deformable model for segmentation of human prostate from ultrasound images.

Segmentation of human prostate from ultrasound (US) images is a crucial step in radiation therapy, especially in real-time planning for US image-guided prostate seed implant. This step is critical to determine the radioactive seed placement and to ensure the adequate dose coverage of prostate. However, due to the low contrast of prostate and very low signal-to-noise ratio in US images, this task remains as an obstacle. The manual segmentation of this object is time consuming and highly subjective. In this work, we have proposed a three-dimensional (3D) deformable surface model for automatic segmentation of prostate. The model has a discrete structure made from a set of vertices in the 3D space that form triangle facets. The model converges from an initial shape to its equilibrium iteratively, by a weighted sum of the internal and external forces. Internal forces are based on the local curvature of the surface and external forces are extracted from the volumetric image data by applying an appropriate edge filter. We have also developed a method for initialization of the model from a few initial contours that are drawn on different slices. During the deformation, a resampling procedure is used to maintain the resolution of the model. The entire model is applied in a multiscale scheme, which increases the robustness and speed, and guarantees a better convergence. The model is tested on real clinical data and initial results are very promising.

Humans↗
PubMed2001

Feature space analysis: effects of MRI protocols.

We present a method for exploring the relationship between the image segmentation results obtained by an optimal feature space method and the MRI protocols used. The steps of the work accomplished are as follows. (1) Patients with brain tumors were imaged on a 1.5 T General Electric Signa MRI System using multiple protocols (T1 and T2-weighted fast spin-echo and FLAIR). T1-weighted images were acquired before and after gadolinium injection. (2) Image volumes were co-registered, and images of a slice through the center of the tumor were selected for processing. (3) For each patient, several image sets were defined by selecting certain MR images (e.g., 4T2's+ IT1, 4T2's+FLAIR, 2T2's+ 1T1). (4) Using each image set, the optimal feature space was generated and images were segmented into normal tissues and different tumor zones. (5) Segmentation results obtained using the different MRI sets were compared. Based on the analysis results from 27 image sets, we found that the locations of the clusters for the tumor zones and their corresponding regions in the image domain changed as a function of the MR images (MRI protocols) used. However, the segmentation results for the total lesion and normal tissues remained relatively unchanged.

Brain Neoplasms↗
PubMed2001

A model for multiparametric mri tissue characterization in experimental cerebral ischemia with histological validation in rat: part 1.

BACKGROUND AND PURPOSE: After stroke, brain tissue undergoes time-dependent heterogeneous histopathological change. These tissue alterations have MRI characteristics that allow segmentation of ischemic from nonischemic tissue. Moreover, MRI segmentation generates different zones within the lesion that may reflect heterogeneity of tissue damage. METHODS: A vector tissue signature model is presented that uses multiparametric MRI for segmentation and characterization of tissue. An objective (unsupervised) computer segmentation algorithm was incorporated into this model with the use of a modified version of the Iterative Self-Organizing Data Analysis Technique (ISODATA). The ability of the model to characterize ischemic tissue after permanent middle cerebral ischemia occlusion in the rat was tested. Multiparametric ISODATA measurements of the ischemic tissue were compared with quantitative histological characterization of the tissue from 4 hours to 1 week after stroke. RESULTS: The ISODATA segmentation of tissue identified a gradation of cerebral tissue damage at all time points after stroke. The histological scoring of ischemic tissue from 4 hours to 1 week after stroke on all the animals was significantly correlated with ISODATA segmentation (r=0.78, P<0.001; n=20) when a multiparametric (T2-, T1-, diffusion-weighted imaging) data set was used, less correlated (r=0.70, P<0.01; n=20) when a T2- and T1-weighted data set was used, and not correlated (r=-0.12, P>0.47; n=20) when only a diffusion-weighted imaging data set was used. CONCLUSIONS: Our data indicate that an integrated set of MRI parameters can distinguish and stage ischemic tissue damage in an objective manner.

Algorithms↗
PubMed2001

Multiparametric MRI tissue characterization in clinical stroke with correlation to clinical outcome: part 2.

BACKGROUND AND PURPOSE: Multiparametric MRI generates different zones within the lesion that may reflect heterogeneity of tissue damage in cerebral ischemia. This study presents the application of a novel model of tissue characterization based on an angular separation between tissues obtained with the use of an objective (unsupervised) computer segmentation algorithm implementing a modified version of the Iterative Self-Organizing Data Analysis Technique (ISODATA). We test the utility of this model to identify ischemic tissue in clinical stroke. METHODS: MR parameters diffusion-, T2-, and T1-weighted imaging (DWI, T2WI, and T1WI, respectively) were obtained from 10 patients at 3 time points (30 studies) after stroke: acute (</=12 hours), subacute (3 to 5 days), and chronic (3 months). The National Institutes of Health Stroke Scale (NIHSS) was measured, and volumes were obtained from the ISODATA, DWI, and T2WI maps on patients at each time point. RESULTS: The acute (</=12 hours) multiparametric ISODATA volume was significantly correlated with the acute (</=12 hours) DWI (r=0.96, P<0.05; n=10) and chronic (3 months) T2WI volume (r=0.69, P<0.05; n=10). The ISODATA-defined tissue regions exhibited MR indices consistent with ischemic and/or infarcted tissue at each time point. The acute (</=12 hours) multiparametric ISODATA volumes were significantly correlated (r=0.82, P<0.009; n=10) with the final NIHSS score. In comparison, the acute (</=12 hours) DWI volumes were less correlated (r=0.77, P<0.05; n=10) and T2WI volume (</=12h) exhibited a marginal correlation (r=0.66, P<0.05; n=10) with the final NIHSS score. CONCLUSIONS: The integrated ISODATA approach to tissue segmentation and classification discriminated abnormal from normal tissue at each time point. The ISODATA volume was significantly correlated with the current MR standards used in the clinical setting and the 3-month clinical status of the patient.

Adult↗
PubMed2000

Unsupervised segmentation of multiparameter MRI in experimental cerebral ischemia with comparison to T2, diffusion, and ADC MRI parameters and histopathological validation.

This study presents histological validation of an objective (unsupervised) computer segmentation algorithm, the iterative self-organizing data analysis technique (ISODATA), for analysis of multiparameter magnetic resonance imaging (MRI) data in experimental focal cerebral ischemia. T2-, T1-, and diffusion (DWI) weighted coronal images were acquired from 4 to 168 hours after stroke on separate groups of animals. Animals were killed immediately after MRI for histological analysis. MR images were coregistered/warped to histology. MRI lesion areas were defined using DWI, apparent diffusion coefficient (ADC) maps, T2-weighted images, and ISODATA. The last techniques clearly discriminated between ischemia-altered and morphologically intact tissue. ISODATA areas were congruent and significantly correlated (r = 0.99, P < 0.05) with histologically defined lesions. In contrast, DWI, ADC, and T2 lesion areas showed no significant correlation with histologically evaluated lesions until subacute time points. These data indicate that multiparameter ISODATA methodology can accurately detect and identify ischemic cell damage early and late after ischemia, with ISODATA outperforming ADC, DWI, and T2-weighted images in identification of ischemic lesions from 4 to 168 hours after stroke.

Algorithms↗
PubMed2000

Boundary-based warping of brain MR images.

The goal of this work was to develop a warping technique for mapping a brain image to another image or atlas data, with minimum user interaction and independent of gray level information. We have developed and tested three different methods for warping magnetic resonance (MR) brain images. We utilize a deformable contour to extract and warp the boundaries of the two images. A mesh-grid coordinate system is constructed for each brain, by applying a distance transformation to the resulting contours, and scaling. In the first method (MGC), the first image is mapped to the second image based on a one-to-one mapping between different layers defined by the mesh-grid. In the second method (IDW), the corresponding pixels in the two images are found using the above mesh-grid system and a local inverse-distance weights interpolation. In the third proposed method (TSB), a subset of grid points is used for finding the parameters of a spline transformation, which defines the global warping. The warping methods were applied to clinical MR consisting of diffusion-weighted and T2-weighted images of the human brain. The IDW and TSB methods were superior in ranking of diagnostic quality of the warped MR images to the MGC (P < 0.01) as defined by a neuroradiologist. The deformable contour warping produced excellent diagnostic quality for the diffusion-weighted images coregistered and warped to T2 weighted images. J. Magn. Reson. Imaging 2000;12:417-429.

Aged↗
PubMed1999

Identification of cerebral ischemic lesions in rat using Eigenimage filtered magnetic resonance imaging.

An accurate noninvasive time-independent identification of an ischemic cerebral lesion is an important objective of magnetic resonance imaging (MRI). This study describes a novel application of a multiparameter MRI analysis algorithm, the Eigenimage (EI) filter, to experimental stroke. The EI is a linear filter that maximizes the projection of a desired tissue (ischemic tissue) while it minimizes the projection of undesired tissues (nonischemic tissue) onto a composite image called an eigenimage. Rats (n=26) were subjected to permanent middle cerebral artery occlusion. T2- and T1-weighted coronal MRI were acquired on separate groups of animals. The animals were immediately sacrificed after each imaging session for histopathological analysis of tissue at 4-8 h, 16-24 h, and 48-168 h after stroke onset. Lesion areas from MRI were defined using EI. The EI defined lesion areas were coregistered and warped to the corresponding histopathological sections. The ischemic lesion as defined by EI exhibited ischemic cell damage ranging from scattered acute cell damage to pan necrosis. Ischemic cellular damage was not detected in homologous contralateral hemisphere regions. EI lesion areas overlaid on histopathological sections were significantly correlated (r=0.92, p<0.05) acutely, (r=0.98, p<0.05) subacutely, and (r=0.99, p<0.05) chronically. These data indicate that EI methodology can accurately segment ischemic damage after MCA occlusion from 4-168 h after stroke.

Algorithms↗
PubMed1999

Registration and warping of magnetic resonance images to histological sections.

We present a method for coregistration and warping of magnetic resonance images (MRI) to histological sections for comparison purposes. This methodology consists of a modified head and hat surface-based registration algorithm followed by a new automated warping approach using nonlinear thin plate splines to compensate for distortions between the data sets. To test the methodology, 15 male Wistar rats were subjected to focal cerebral ischemia via permanent occlusion of the middle cerebral artery. The MRI images were acquired in separate groups of animals at 16-24 h (n = 9) and 48-168 h (n = 6) postocclusion. After imaging, animals were immediately sacrificed and hematoxylin- and eosin-stained brain sections were obtained for histological analysis. The MRI was coregistered and warped to histological sections. The MRI lesion areas were defined using the Eigenimage (EI) filter technique. The EI is a linear filter that maximizes the projection of a desired tissue (ischemic tissue) while it minimizes the projection of undesired tissues (nonischemic tissue) onto a composite image called an EI. When using coregistration without warping the MRI lesion area demonstrated poor correlation (r = 0.55, p > 0.01) with a percent difference between the two lesion areas of 22.5% +/- 10.8%. After warping, the MRI and histology had significant correlation (r = 0.97, p < 0.01) and a decreased percent difference of 5.56% +/- 4.31%. This methodology is simple and robust for coregistration and warping of MRI to histological sections and can be utilized in many applications for comparison of MRI to histological data.

Algorithms↗
PubMed1998

Feature space analysis of MRI.

This paper presents an MRI feature-space image-analysis method and its application to brain tumor studies. The proposed method generates a transformed feature space in which the normal tissues (white matter, gray matter, and CSF) become orthonormal. As such, the method is expected to have site-to-site and patient-to-patient consistency, and is useful for identification of tissue types, segmentation of tissues, and quantitative measurements on tissues. The steps of the work accomplished are as follows: (1) Four T2-weighted and two T1-weighted images (before and after injection of gadolinium) were acquired for 10 tumor patients. (2) Images were analyzed by an image analyst according to the proposed algorithm. (3) Biopsy samples were extracted from each patient and were subsequently analyzed by the pathology laboratory. (4) Image-analysis results were compared with the biopsy results. Pre- and postsurgery feature spaces were also compared. The proposed method made it possible to visualize the MRI feature space and to segment the image. In all cases, the operators were able to find clusters for normal and abnormal tissues. Also, clusters for different zones of the tumor were found. The method successfully segmented the image into normal tissues (white matter, gray matter, and CSF) and different zones of the lesion (tumor, cyst, edema, radiation necrosis, necrotic core, and infiltrated tumor). The results agreed with those obtained from the biopsy samples. Comparison of pre- with postsurgery and radiation feature spaces illustrated that the original solid tumor was not present in the second study, but a new tissue component appeared in a different location of the feature space. This tissue could be radiation necrosis generated as a result of radiation.

Artifacts↗
PubMed1998

A 3D deformable surface model for segmentation of objects from volumetric data in medical images.

In this paper we present a new 3D discrete dynamic surface model. The model consists of vertices and edges, which connect adjacent vertices. Basic geometry of the model surface is generated by triangle patches. The model deforms by internal and external forces. Internal forces are obtained from local geometry of the model and are related to the local curvature of the surface. External forces, on the other hand, are based on the image data and are calculated from desired image features. We also present a method for generating an initial volume for the model from a stack of initial contours, drawn by the user on cross sections of the volumetric data.

Algorithms↗
PubMed1998

Time course of ADCw changes in ischemic stroke: beyond the human eye!

BACKGROUND AND PURPOSE: Using newly developed computerized image analysis, we studied the heterogeneity of apparent diffusion coefficient of water (ADCw) values in human ischemic stroke within 10 hours of onset. METHODS: Echo-planar trace diffusion-weighted images from 9 patients with focal cortical ischemic stroke were obtained within 10 hours of symptom onset. An Iterative Self-Organizing Data Analysis (ISODATA) clustering algorithm was implemented to segment different tissue types with a series of DW images. ADCw maps were calculated from 4 DW images on a pixel-by-pixel basis. The segmented zones within the lesion were characterized as low, pseudonormal, or high, expressed as a ratio of the mean+/-SD of ADCw of contralateral noninvolved tissue. RESULTS: The average ADCW in the ischemic stroke region within 10 hours of onset was significantly depressed compared with homologous contralateral tissue (626.6+/-76.8 versus 842.9+/-60.4x10(-6) mm2/s; P<0.0001). Nevertheless, ISODATA segmentation yielded multiple zones within the stroke region that were characterized as low, pseudonormal, and high. The mean proportion of low:pseudonormal:high was 72%:20%:8%. CONCLUSIONS: Despite low average ADCW, computer-assisted segmentation of DW MRI detected heterogeneous zones within ischemic lesions corresponding to low, pseudonormal, and high ADCw not visible to the human eye. This supports acute elevation of ADCw in human ischemic stroke and, accordingly, different temporal rates of tissue evolution toward infarction.

Acute Disease↗
PubMed1997

A multiresolution approach for contour extraction from brain images.

Many image registration methods use head surface, brain surface, or inner/outer surface of the skull to estimate rotation and translation parameters. The inner surface of the skull is also used for intracranial volume segmentation which is considered the first step in segmentation and analysis of brain images. The surface is usually characterized by a set of edge or contour points extracted from cross-sectional images. Automatic extraction of contour points is complicated by discontinuity of edges in the back of the eyes and ears and sometimes by a previous surgery or an inadequate field of view. We have developed an automated method for contour extraction that connects discontinuities using a multiresolution pyramid. Steps of the method are: (1) Contour points are found by an edge-tracking algorithm; (2) A multiresolution pyramid of contour points is constructed; (3) Contour points of reduced images are found; (4) From the continuous contour found at the lowest resolution, contour points at a higher resolution are found; (5) Step 4 is repeated until contour points at the highest resolution (original image) are found. The method runs fast and has been successful in extracting contours from MRI and CT images. We illustrate the method and its performance using MRI and CT images of the human brain.

Algorithms↗
PubMed1996

Cerebral tumor volume calculations using planimetric and eigenimage analysis.

Volume determination in cerebral tumors requires accurate and reproducible segmentation. This task has been traditionally accomplished using planimetric methods which define the boundary of the lesion using thresholding and edge detection schemes. These methods lack accuracy and reproducibility when the contrast between the lesion and surrounding tissue is not maximized. Because of this limitation contrast agents are used providing reproducible results for the enhancing portion of the lesion. A novel approach for volume determination has been developed (eigenimage filter) which segments a desired feature (tissue type) from surrounding undesired features in a sequence of images. This method corrects for partial volume effects and has been shown to provide accurate and reproducible volume determinations. In addition, the eigenimage filter does not require the use of contrast and has the capability to segment a lesion into multiple regions. This allows different components of the lesion to be included and monitored in treatment. In this study planimetric methods and the eigenimage filter were compared for segmenting cerebral tumors and determining their volumes. The planimetric methods were reproducible in determining volumes for the enhancing portion of the lesion with interobserver percent differences < 8% and intraobserver percent differences < 4%. The eigenimage filter had interobserver percent differences < 7% and intraobserver percent differences < 3%. In the eigenimage procedure both the enhancing portion of the lesion as well as additional regions within the lesion were identified. Comparing the results obtained from the two methods demonstrated good agreement for presurgical studies (percent differences < 9%). When comparing postsurgical studies large differences were seen. In the postsurgical studies the eigenimage method allowed multiple regions to be followed in subsequent MRI and in two patients showed a volume change that suggested tumor recurrence more clearly. Since the amount of information obtained using the eigenimage filter may allow a more complete assessment of the lesion, it is suggested that it could improve the clinical evaluation of cerebral tumors.

Biophysical Phenomena↗
PubMedDate not supplied

Brain tumor segmentation and characterization by pattern analysis of multispectral NMR images.

A major problem in tumor treatment planning and evaluation is determination of the tumor extent. This paper presents a pattern analysis methodology for segmentation and characterization of brain tumors from multispectral NMR images. The proposed approach has been used in 15 clinical studies of cerebral tumor patients who have been scheduled for surgical biopsy and resection. The tissue biopsy results, obtained at specific spatial coordinates determined in the analysis, have been utilized to validate the methodology. It was found that in all cases the lesion had extended into normal tissue, at least to the location where the sample was taken. In most cases, the proposed method suggested that the lesion had extended several millimetres beyond the point from where the biopsy sample was taken. In some cases, the extent of the lesion into normal tissue was well beyond the boundary seen on T1- or T2-weighted images. It is concluded that the proposed approach indicates brain tumor infiltration more precisely than what is visualized in the original NMR images and therefore its utilization facilitates proper treatment planning for the cerebral tumor patients.

Biopsy↗
PubMedDate not supplied

Segmentation of the hippocampus from brain MRI using deformable contours.

The application of a discrete dynamic contour model for segmentation of the hippocampus from brain MRI has been investigated. Solutions to several common problems of dynamic contours in this case and similar cases have been developed. A new method for extracting the discontinuous boundary of a structure with multiple edges near the structure has been developed. The method is based on detecting and following edges by external forces. The reliability of the final contour and the model stability have been improved by using a continuous mapping of the external energy and limiting movements of the contour. The problem of optimizing the internal force weight has been overcome by making it dependent on the amount of the external force. Finally, the results of applying the proposed algorithm, which implements the above modifications, to multiple applications have been evaluated.

Algorithms↗