Biomedical subjects

Haibin Chen

Publications and source records attributed to Haibin Chen.

8 recordsLinked to original sources

PubMed2006

QCM-D analysis of binding mechanism of phage particles displaying a constrained heptapeptide with specific affinity to SiO2 and TiO2.

A growing number of peptides capable of specifically recognizing inorganic materials have been reported, incrementally increasing the potential to harness peptides as a biological linker to bridge biomolecules and inorganic materials at nanometer scale. In this study, we identified disulfide bond constrained heptapeptides with specific binding affinity to SiO2 and TiO2 using a phage display technique. Interestingly, two of the phage surface displayed peptides enriched with basic amino acid residues, STB1 (HKKPSKS) and STB2 (TKRNNKR), showed a cross binding affinity to both metal oxides. To understand the underlying binding mechanism, binding behaviors of phage particles harboring the STB1 (a high-frequency heptapeptide exhibiting dual binding affinity to both metal oxides) were investigated in a wide pH range using quartz crystal microbalance with energy dissipation measurement (QCM-D). It was found that the binding of STB1-harboring phages to the two metal oxides was clearly mediated by the peptide moiety displayed on the phage surface in a pH-dependent manner, indicating that the binding is largely governed by electrostatic interaction. Furthermore, the interpretation of QCM-D signals (i.e., frequency shift and dissipation shift), with the aid of AFM image analysis of the phage particles bound on the surface of the two metal oxides, elucidated whether the nature of phage (or the displayed peptide) binding to the metal oxides is largely specific or nonspecific.

Amino Acid Sequence↗

PubMed2006

Transport diffusion of gases is rapid in flexible carbon nanotubes.

Molecular dynamics simulations of rigid, defect-free single-walled carbon nanotubes have previously suggested that the transport diffusivity of gases adsorbed in these materials can be orders of magnitude higher than any other nanoporous material (A. I. Skoulidas et al., Phys. Rev. Lett. 2002, 89, 185901). These simulations must overestimate the molecular diffusion coefficients because they neglect energy exchange between the diffusing molecules and the nanotube. Recently, Jakobtorweihen et al. have reported careful simulations of molecular self-diffusion that allow nanotube flexibility (Phys. Rev. Lett. 2005, 95, 044501). We have used the efficient thermostat developed by Jakobtorweihen et al. to examine the influence of nanotube flexibility on the transport diffusion of CH4 in (20,0) and (15,0) nanotubes. The inclusion of nanotube flexibility reduces the transport diffusion relative to the rigid nanotube by roughly an order of magnitude close to zero pressure, but at pressures above about 1 bar the transport diffusivities for flexible and rigid nanotubes are very similar, differing by less than a factor or two on average. Hence, the transport diffusivities are still extremely large compared to other known materials when flexibility is taken into account.

Journal Article↗

PubMed2006

Efficient simulation of binary adsorption isotherms using transition matrix Monte Carlo.

Molecular simulations of binary adsorption in porous materials are a useful complement to experimental studies of mixture adsorption. Most molecular simulations of binary adsorption are performed using grand canonical Monte Carlo (GCMC) to independently examine a range of state points of interest. A disadvantage of this approach is that it only yields information at a discrete set of state points; therefore, if a complete isotherm is required for arbitrary conditions, some type of data fitting or interpolation must be used in combination with the GCMC data. We show that the transition matrix Monte Carlo (TMMC) method of Shen and Errington (Shen, V. K.; Errington, J. R. J. Chem.Phys. 2005, 122, 064508) is well-suited to simulation of binary adsorption in porous materials. At the completion of a TMMC simulation, the adsorption isotherm for all possible bulk phase compositions and pressures is available without data fitting or interpolation. It is also straightforward to use results from TMMC to compute derivatives of the isotherm such as the mixture thermodynamic correction factors, partial differential ln f(i)/partial differential ln c(j), again without data fitting or interpolation. This approach should be useful in contexts where information on the full adsorption isotherm is needed, such as the design of adsorption- or membrane-based separations.

Journal Article↗

PubMed2006

[Soil carbon cycle of Pinus tabulaeformis forest in Huoditang forest region of Qinling Mountains].

With soil carbon cycle compartment model,this paper studied the carbon storage and flux of each carbon compartment of soil under Pinus tabulaeformis, a main forest type in the Huoditang forest region of Qinling Mountain. The results showed that the storage of soil organic carbon was 146.071 t x hm(-2), with 130.366 t x hm(-2) in mineral soil layer and 12.626 t x hm(-2) in litter layer. The storage was lower than the average value of forest soils in China and of oak Sharptooth forest soil in Huoditang, but higher than that of the soils under temperate coniferous forest and tropical forest. The annual carbon input into litter layer was 5.939 t x hm(-2), with 56.9% from above-ground litter and 43.1% from underground dead roots, while that into mineral soil layer via humic acid was 2. 034 t x hm(-2). The annual amount of carbon released from the respiration of P. zabulaeformis forest-soil system was 14. 012 t x hm(-2), with litter layer, mineral soil layer, dead root system, and live root system occupied 15.7%, 14.5%, 11.7% and 58.1%, respectively.

Carbon↗

PubMed2004

Rapid diffusion of CH4/H2 mixtures in single-walled carbon nanotubes.

Equilibrium molecular dynamics (EMD) are used to examine the self-diffusion and macroscopic diffusion of CH4/H2 mixtures adsorbed inside a (10,10) single-walled carbon nanotube. EMD can be used to determine the macroscopic diffusion coefficients of adsorbed mixtures by evaluating the matrix of Onsager transport coefficients. Earlier studies have indicated the diffusion of light gases adsorbed as single components in carbon nanotubes is extremely rapid compared to that in other known nanoporous materials. The results presented here indicate that extremely rapid diffusion can also occur for mixtures of adsorbed molecules. The rapid diffusion of adsorbed molecules and the strong coupling between the fluxes of the adsorbed species in a mixture have interesting implications for uses of carbon nanotubes in membrane-based applications.

Journal Article↗

PubMed2004

State-specific monoclonal antibodies identify an intermediate state in epsilon protein kinase C activation.

Evaluation of the activation state of protein kinase C (PKC) isozymes relies on analysis of subcellular translocation. A monoclonal antibody, 14E6, specific for the activated conformation of epsilonPKC, was raised using the first variable (V1) domain of epsilonPKC as the immunogen. 14E6 binding is specific for epsilonPKC and is greatly increased in the presence of PKC activators. Immunofluorescence staining by 14E6 of neonatal rat primary cardiac myocytes and the NG108-15 neuroblastoma glioma cell line, NG108-15/D2, increases rapidly following cell activation and is localized to new subcellular sites. However, staining of translocated epsilonPKC with 14E6 is transient, and the epitope disappears 30 min after activation of NG-108/15 cells by a D2 receptor agonist. In contrast, subcellular localization associated with activation, as determined by commercially available polyclonal antibodies, persists for at least 30 min. In vitro, epsilonRACK, the receptor for activated epsilonPKC, inhibits 14E6 binding to epsilonPKC, suggesting that the 14E6 epitope is lost or hidden when active epsilonPKC binds to its RACK. Therefore, the 14E6 antibody appears to identify a transient state of activated but non-anchored epsilonPKC. Moreover, binding of 14E6 to epsilonPKC only after activation suggests that lipid-dependent conformational changes associated with epsilonPKC activation precede binding of the activated isozyme to its specific RACK, epsilonRACK. Further, monoclonal antibody 14E6 should be a powerful tool to study the pathways that control rapid translocation of epsilonPKC from cytosolic to membrane localization on activation.

Animals↗

PubMed2004

[Mechanical response numerical analysis of bone tissue based on liquid saturated biphasic porous medium model].

A biphasic porous medium model based on the mixture theory in continuum mechanics frame was used to depict the distributions of osseous stress field, distortion field and pore pressure when the bone tissue was subject to various dynamic loads. In the model, the bone tissue was considered as a transversely isotropic, liquid saturated porous material. The coupling relationship among the distortion, fluid flow and the streaming potential is studied. The Galerkin weighted residual method was used to derive the finite element formulation for dynamic response and the streaming potential calculating formulation of bone tissue, the penalty finite element formulation was obtained via introducing the ratio term of pressure p and penalty parameter beta in the continuity equation and, in turn, eliminated the pressure term in governing equation sets. The computational results show that the viscoelastic behavior and the energy dissipation property in the bone tissue, especially in the cancellous bone, is caused to a great extent by the pore liquid flow and diffusion. Meanwhile, because of the existence of electrical double layer between the solid phase and liquid phase, when the liquid constituents in the pore diffuse, the streaming potential appears, and the growth and absorption of bone tissue is expedited.

Biomechanical Phenomena↗

PubMed2000

Rabbit lung injury induced by explosive decompression.

OBJECTIVE: To study the mechanism of rabbit lung injury caused by explosive decompression. METHODS: A total of 42 rabbits and 10 rats were served as the experimental animals. A slow recompression-decompression test and an explosive decompression test were applied to the animals, respectively. And the effects of the given tests on the animals were discussed. RESULTS: The slow recompression-decompression did not cause an obvious lung injury, but the explosive decompression did cause lung injuries in different degrees. The greater the decompression range was, the shorter the decompression duration was, and the heavier the lung injuries were. CONCLUSIONS: Explosive decompression can cause a similar lung injury as shock wave does. The primary mechanical causes of the lung injury might be a tensile strain or stress in the alveolar wall and the pulmonary surface's impacts on the inside wall of the chest.

Journal Article↗