Biomedical subjects

Hanna Vehkamäki

Publications and source records attributed to Hanna Vehkamäki.

9 recordsLinked to original sources

PubMed2006

Theoretical and experimental study on phase transitions and mass fluxes of supersaturated water vapor onto different insoluble flat surfaces.

The heterogeneous nucleation and condensation of water vapor onto three different surfaces (newsprint paper, Teflon, cellulose film) was studied theoretically and experimentally. The theoretical framework included the use of the classical theory of heterogeneous nucleation, diffusion theory corrected with transition regime correction factors, and the theory of heat transfer. Experiments were carried out using an environmental scanning electron microscope (ESEM). The experimental results for newsprint paper were investigated more closely. Our results show that the measured onset supersaturations were smaller than the modeled ones when the experimentally determined contact angle was used. Furthermore, the measured condensational growth rates were smaller than the modeled ones, presumably resulting from the approximations that had to be made in the calculations.

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PubMed2006

Comparison between the classical theory predictions and molecular simulation results for heterogeneous nucleation of argon.

We have performed Monte Carlo simulations of homogeneous and heterogeneous nucleations of Lennard-Jones argon clusters. The simulation results were interpreted using the major concept posing a difference between the homogeneous and heterogeneous classical nucleation theories-the contact parameter. Our results show that the multiplication concept of the classical heterogeneous nucleation theory describes the cluster-substrate interaction surprisingly well even for small molecular clusters. However, in the case of argon nucleating on a rigid monolayer of fcc(111) substrate at T=60 K, the argon-substrate atom interaction being approximately one-third as strong as the argon-argon interaction, the use of the classical theory concept results in an underestimation of the heterogeneous nucleation rate by two to three orders of magnitude even for large clusters. The main contribution to this discrepancy is induced by the failure of the classical theory of homogeneous nucleation to predict the energy involved in bringing one molecule from the vapor to the cluster for clusters containing less than approximately 15 molecules.

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PubMed2006

A comparison of rigid and flexible water models in collisions of monomers and small clusters.

In this study we have investigated the dynamics of small water clusters using microcanonical molecular dynamics simulations. The clusters are formed by colliding vapor monomers with target clusters of two and five molecules. The monomers are sampled from a thermal ensemble at T=300 K and target clusters with several total energies are considered. We compare rigid extended simple point charge water with flexible counterparts having intramolecular harmonic bonds with force constants 10(3) and 10(5) kcal(mol A2). We show that the lifetimes of the clusters formed via collision process are similar for the rigid model and the flexible model with the bigger force constant, if the translational temperatures of the target cluster molecules are equal. The model with the smaller force constant results in much longer lifetimes due to the stabilizing effect caused by the kinetic energy transfer into internal vibration of the molecules. This process may take several hundreds of picoseconds, giving rise to time-dependent decay rates of constant-energy clusters. A study of binary collisions of water molecules shows that the introduction of flexibility to the molecules increases the possibility of dimer formation and thus offers an alternative route for dimer production in vapors. Our results imply that allowing for internal degrees of freedom is likely to enhance gas-liquid nucleation rates in water simulations.

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PubMed2006

Analysis of nucleation ability of cluster configurations with Monte Carlo simulations of argon.

We determine the nucleation ability of argon clusters from Monte Carlo simulations. The nucleation rate appears to be defined by a sole characteristic of the clusters, namely, the stability. The stability is calculated as the ratio of grand canonical growth and decay rates and can be assigned to individual cluster configurations. We study the connection between the stability of the cluster configurations and their volume and total potential energy. Neither the potential energy nor the volume of a cluster configuration has a clear relation to its stability, and thus to the nucleation ability. On the other hand, we show that it is possible to use a specific volume for each cluster size to calculate the work of the cluster formation. These clusters with a unique volume have the same average stability as the full set of clusters. Our simulation method allows us to study the effect of possible deviations from equilibrium in the cluster configuration distributions. We argue that the nucleation process itself can produce a source for such a deviation. We show that even a small deviation from equilibrium in the cluster configuration distribution can lead to a dramatic deceleration of the nucleation rate. Although our simulations may overestimate the magnitude of the effect, they give qualitative estimates for its importance.

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PubMed2006

Ab initio and density functional theory reinvestigation of gas-phase sulfuric acid monohydrate and ammonium hydrogen sulfate.

We have calculated the thermochemical parameters for the reactions H(2)SO(4) + H(2)O <--> H(2)SO(4).H(2)O and H(2)SO(4) + NH(3) <--> H(2)SO(4).NH(3) using the B3LYP and PW91 functionals, MP2 perturbation theory and four different basis sets. Different methods and basis sets yield very different results with respect to, for example, the reaction free energies. A large part, but not all, of these differences are caused by basis set superposition error (BSSE), which is on the order of 1-3 kcal mol(-1) for most method/basis set combinations used in previous studies. Complete basis set extrapolation (CBS) calculations using the cc-pV(X+d)Z and aug-cc-pV(X+d)Z basis sets (with X = D, T, Q) at the B3LYP level indicate that if BSSE errors of less than 0.2 kcal mol(-1) are desired in uncorrected calculations, basis sets of at least aug-cc-pV(T+d)Z quality should be used. The use of additional augmented basis functions is also shown to be important, as the BSSE error is significant for the nonaugmented basis sets even at the quadruple-zeta level. The effect of anharmonic corrections to the zero-point energies and thermal contributions to the free energy are shown to be around 0.4 kcal mol(-1) for the H(2)SO(4).H(2)O cluster at 298 K. Single-point CCSD(T) calculations for the H(2)SO(4).H(2)O cluster also indicate that B3LYP and MP2 calculations reproduce the CCSD(T) energies well, whereas the PW91 results are significantly overbinding. However, basis-set limit extrapolations at the CCSD(T) level indicate that the B3LYP binding energies are too low by ca. 1-2 kcal/mol. This probably explains the difference of about 2 kcal mol(-1) for the free energy of the H(2)SO(4) + H(2)O <--> H(2)SO(4).H(2)O reaction between the counterpoise-corrected B3LYP calculations with large basis sets and the diffusion-based experimental values of S. M. Ball, D. R. Hanson, F. L Eisele and P. H. McMurry (J. Phys. Chem. A. 2000, 104, 1715). Topological analysis of the electronic charge density based on the quantum theory of atoms in molecules (QTAIM) shows that different method/basis set combinations lead to qualitatively different bonding patterns for the H(2)SO(4).NH(3) cluster. Using QTAIM analysis, we have also defined a proton transfer degree parameter which may be useful in further studies.

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PubMed2006

Postcollision relaxation of small atomic clusters.

Molecular-dynamics simulations are performed to investigate the effects caused by the lack of internal equilibration on the dynamics and properties of atomic clusters. The studied systems consist of Lennard-Jones clusters of five to ten atoms and a colliding vapor monomer. Cluster radius and potential energy are shown to reach a time-independent value within 30 ps after a collision with a vapor monomer. The relaxation in terms of rotational energy takes at least 200 ps. During the first couple of picoseconds after the collision time-dependent cluster decay rates are observed. The unrelaxed cluster states are expected to have minimal effect on gas-liquid nucleation rates.

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PubMed2004

Stable ammonium bisulfate clusters in the atmosphere.

Liquid drop model based equilibrium thermodynamics predicts that in the presence of even small ammonia concentrations practically all the atmospheric sulfuric acid molecules are bound to tiny, stable ammonium-bisulfate clusters. Hitherto sulfuric acid has been believed to form hydrates with water. Thermodynamic theory predicts correctly the hydrate formation observed experimentally. Results from ab initio computer simulations contradict the thermodynamic results and also the experimental findings for cluster formation in both sulfuric acid-water and ammonia-sulfuric acid-water mixtures.

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PubMed2004

Molecular dynamic simulations of atom-cluster collision processes.

Monomer-cluster collisions of Lennard-Jones argon atoms have been studied using molecular dynamics simulation for target cluster sizes of 2, 3, 4, 5, 10, and 20 atoms. Capture probability of monomers by clusters and the lifetimes of the resulting clusters have been calculated as a function of impact parameter and the total energy of the target cluster. Cluster lifetime is further integrated over all impact parameters to obtain the average lifetime for each cluster size and energy. The average lifetime of the smallest aggregates is shown to be short compared to the collision time between monomers and clusters unless the vapor is highly supersaturated. The formation probability of a new cluster decreases steeply if a minimum lifetime is required for the cluster.

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PubMed2004

Binary homogeneous nucleation in water-succinic acid and water-glutaric acid systems.

Binary homogeneous nucleation of water-succinic acid and water-glutaric acid systems have been investigated. The numerical approach was based on the classical nucleation theory. Usually, nucleation is discussed in terms of kinetics, but the thermodynamics involved is undoubtedly equally important. In this paper we studied the above mentioned binary systems giving a quantitative insight into the nucleation process and a detailed consideration of the thermodynamics involved. Both diacids in study are in solid state at room temperature. They behave in environment according to their liquid state properties because of the absence of crystalline lattice energies, and therefore their subcooled liquid state thermodynamics have to be considered. The lack of consistent thermodynamic data for pure organic components and their aqueous solutions represent a high source of uncertainty. However, the present simulations indicate that in atmospheric conditions these binary systems will not form new particles.

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