Biomedical subjects

Hans-Dieter Meyer

Publications and source records attributed to Hans-Dieter Meyer.

12 recordsLinked to original sources

PubMed2007

Theoretical investigation of highly excited vibrational states in DFCO: calculation of the out-of-plane bending states and simulation of the intramolecular vibrational energy redistribution.

A previously developed modified Davidson scheme [C. Iung and F. Ribeiro, J. Chem. Phys. 121, 174105 (2005)] is applied to compute and analyze highly excited (nu2,nu6) eigenstates in DFCO. The present paper is also devoted to the simulations of the intramolecular vibrational energy redistribution (IVR) initiated by an excitation of the out-of-plane bending vibration (nnu6, n=2,4,6, . . . ,18, and 20). The multiconfiguration time-dependent Hartree method is exploited to propagate the corresponding six-dimensional wave packets. A comprehensive comparison with experimental data as well as with previous simulations of IVR in HFCO [G. Pasin et al. J. Chem. Phys. 124, 194304 (2006)] is presented.

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PubMed2006

Femtosecond laser pulse control of multidimensional vibrational dynamics: Computational studies on the pyrazine molecule.

The multiconfiguration time-dependent Hartree (MCTDH) method is combined with the optimal control theory (OCT) to study femtosecond laser pulse control of multidimensional vibrational dynamics. Simulations are presented for the widely discussed three-electronic-level vibronic coupling model of pyrazine either in a three or four vibrational coordinate version. Thus, for the first time OCT is applied to a four-coordinate system. Different control tasks are investigated and also some general aspects of the OCT-MCTDH method combination are analyzed.

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PubMed2006

Theoretical investigation of intramolecular vibrational energy redistribution in highly excited HFCO.

The present paper is devoted to the simulations of the intramolecular vibrational energy redistribution (IVR) in HFCO initiated by an excitation of the out-of-plane bending vibration [nnu(6)=2,4,6,...,18,20]. Using a full six-dimensional ab initio potential energy, the multiconfiguration time-dependent Hartree (MCTDH) method was exploited to propagate the corresponding six-dimensional wave packets. This study emphasizes the stability of highly excited states of the out-of-plane bending mode which exist even above the dissociation threshold. More strikingly, the structure of the IVR during the first step of the dynamics is very stable for initial excitations ranging from 2nu(6) to 20nu(6). This latter result is consistent with the analysis of the eigenstates obtained, up to 10nu(6), with the aid of the Davidson algorithm in a foregoing paper [Iung and Ribeiro, J. Chem. Phys. 121, 174105 (2005)]. The present study can be considered as complementary to this previous investigation. This paper also shows how MCTDH can be used to predict the dynamical behavior of a strongly excited system and to determine the energies of the corresponding highly excited states.

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PubMed2006

Interatomic Coulombic decay in a heteroatomic rare gas cluster.

Interatomic decay in a heteroatomic rare gas cluster (NeAr) is studied in detail using ab initio electronic structure description and nuclear dynamics simulations. Decay widths of all possible interatomic decay processes are calculated by the recently developed method based on Green's function formalism. Kinetic energy spectra of the electrons emitted in the course of interatomic Coulombic decay (ICD) are simulated for a series of initial vibrational states of the neutral cluster. The effect of the nuclear dynamics on the ICD electron spectra is discussed.

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PubMed2006

Vibrational excitons in alpha-helical polypeptides: multiexciton self-trapping and related infrared transient absorption.

Based on the multiexciton expansion of a model Hamiltonian, an accurate quantum-dynamical description of vibrational states formed by amide modes in alpha-helical polypeptides is presented. Using the multiconfiguration time-dependent Hartree method, linear and pump-probe infrared absorption spectra are calculated by numerical time propagation of the exciton-chain vibrational wave function. The formation of self-trapped exciton states is discussed within the approximation of adiabatic excitons and within the full quantum description.

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PubMed2005

Simulation of a complex spectrum: interplay of five electronic states and 21 vibrational degrees of freedom in C5H4 +.

Using a five-state, all-mode vibronic coupling model Hamiltonian derived in a previous publication [A. Markmann et al., J. Chem. Phys. 122, 144320 (2005)], we have calculated the photoelectron spectrum of the pentatetraene cation in the neighborhood of the B (2)E state, which can be represented with charge-localized components. To this end, quantum nuclear dynamics calculations were performed using the multiconfiguration time-dependent Hartree method, taking all 21 vibrational normal modes into account. Compared to experiment, the main features are reproduced but higher accuracy experiments are necessary to gauge the accuracy of the predictions for the vibronic progressions at the rising flank of the spectrum.

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PubMed2005

Rotational excitation cross sections of para-H2 + para-H2 collisions. A full-dimensional wave-packet propagation study using an exact form of the kinetic energy.

A full-dimensional quantum dynamical study of the rotational excitation in para-para H2 + H2 collisions using the potential-energy surface of Boothroyd et al. [J. Chem. Phys. 116, 666 (2002)] is reported. The multiconfiguration time-dependent Hartree algorithm is utilized to propagate wave packets and the cross sections for collision energies up to 1.2 eV are determined by a flux analysis through the interaction of the wave packet with a complex absorbing potential. Calculations for a collection of total angular momenta up to J = 70 are performed; the missing channels are obtained with a J-interpolation algorithm.

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PubMed2005

Proton conduction along a chain of water molecules. Development of a linear model and quantum dynamical investigations using the multiconfiguration time-dependent Hartree method.

Proton transfer along a chain of water molecules is discussed. A linear model for such a chain is developed and its parameters are determined by comparison to quantum chemistry calculations. Fully quantum mechanical dynamical simulations on the translocation process are performed for different chain lengths, with up to five water molecules. We found that tunneling is important for the proton-transfer process. Furthermore, translocation is accomplished through a strongly correlated motion involving both hydrogen and oxygen atoms. An approximate treatment, which limits or even neglects this correlation, may lead to severely incorrect results.

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PubMed2004

Multidimensional density operator propagations in open systems: model studies on vibrational relaxations and surface sticking processes.

An efficient method for the numerical treatment of multidimensional dynamics of open systems is presented: the multiconfiguration time-dependent Hartree (MCTDH) method extended to the propagation of density operators. With this method we investigate the relaxation process of a CO molecule adsorbed on a copper surface, i.e., CO/Cu(100), after the excitation with an infrared (IR) pulse. The interaction potential was taken from the literature. Lifetime estimations and thermalization studies were performed on the IR excited CO molecule. We were able to treat this system with all six degrees of freedom (DOF) and thus 12 dynamical variables, but most of our studies used a two or four DOF model. Finally, we demonstrate the applicability of MCTDH to the analysis of scattering processes in an open environment. We calculate sticking coefficients of a scattered particle to a model surface, the latter acting as heat bath. The surface corrugation and the initial particle energy have been varied, and six different relaxation strengths have been studied. These calculations were done under the inclusion of three DOFs: the two surface coordinates and the distance between the particle and the surface.

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PubMed2004

Intramolecular vibrational energy redistribution in the highly excited fluoroform molecule: a quantum mechanical study using the multiconfiguration time-dependent Hartree algorithm.

The present paper is devoted to a detailed study of the intramolecular vibrational energy redistribution in fluoroform initiated by a local mode excitation of the CH stretch [nnu(CH) (n=1,...,4)]. All nine internal degrees of freedom are explicitly taken into account and the full quantum mechanical simulation is performed by means of the multiconfiguration time-dependent Hartree algorithm. The existence of different time scales considerably complicates the dynamics. The mode-to-mode energy transfer is analyzed by calculating the evolution of the partial energies of all vibrational modes. This study emphasizes the crucial role played by the two-dimensional FCH bending modes which act as an energy reservoir. The fast energy flow into these bending modes significantly hinders an energy flow from the CH chromophore. Finally, our results are compared with those obtained previously with the wave operator sorting algorithm approach.

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PubMed2004

Time-dependent wave packet study on trans-cis isomerization of HONO.

Using a full six-dimensional ab initio potential energy surface and nuclear motion Hamiltonian, time-dependent computations were performed for the cis-trans isomerization of HONO. The multiconfiguration time-dependent Hartree method was used to propagate the six-dimensional wave packets. The initial excitations were chosen to be excitations of the local stretch modes and the HON local bend mode. The energy redistribution within 2 to 5 ps in the energy region of the OH stretching modes in both isomers was analyzed. The Fourier transformed frequency domain spectra were attributed to the eigenstates calculated previously by the time-independent variational approach. The results are also compared with classical trajectory computations of Thomson et al. on empirical surfaces. In agreement with matrix experiments, the cis-->trans isomerization was found to be much faster than the opposite interconversion. The intramolecular dynamics were found to be very complex involving numerous weakly excited delocalized eigenstates and anharmonic resonances. Particularly in the cis-isomer, the excitation of the HON bending local mode leads to fast energy redistribution in cis-trans delocalized modes. Neither the excitation of the OH stretching local mode in the cis nor in the trans form produces a fast isomerization, in agreement with the strongly localized characters of the corresponding eigenstates calculated variationally by Richter et al. and the gas phase spectra of HONO.

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PubMed2004

A study of the mode-selective trans--cis isomerization in HONO using ab initio methodology.

Ab initio calculations on the six-dimensional cis--trans double minimum potential energy surface of the electronic ground state of the HONO molecule were performed using a coupled cluster approach. An analytic fit to the data points was established. The interconversion barrier was calculated to be 4105 cm(-1). The nuclear motion problem was solved variationally using a full six-dimensional Hamiltonian in internal coordinates. The eigenstates up to about 3650 cm(-1) were tentatively assigned by harmonic quantum numbers. The assignment was based on the mean values of the internal coordinates of the six-dimensional eigenfunctions and on a comparison of the eigenenergies with those calculated by second-order perturbation theory from a full quartic force field in dimensionless normal coordinates. In cold matrices the trans- and the cis-OH nu(1) stretching modes and the first trans- and cis-NO 2nu(2) stretching overtones lead to isomerization. In the isolated molecule these modes (J=0) were found to be entirely localized. However, several overtones of the nu(4) ONO bending and nu(5) N-O stretching, which are close in energy to the OH stretch and combined with the torsional mode, were found to be strongly cis-trans delocalized.

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