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Biomedical subjects

Hiroshi Tsukube

Publications and source records attributed to Hiroshi Tsukube.

At least 19 recordsLinked to original sources
PubMed2007

"Pocket dendrimers" as nanoscale receptors for bimolecular guest accommodation.

A new series of dendrimer receptors was prepared by combining a (tetraphenylporphinato)zinc(II) core and benzyl ether type dendritic substituents. Since one direction of the (tetraphenylporphinato)zinc(II) was not substituted by a dendritic residue, the resulting unsymmetrical dendrimers have "pockets" available for access of external substrates. Molecular modeling, NMR measurements, and zinc-coordination experiments revealed that the third-generation dendrimer of this type exhibited characteristic inclusion of coordinative pyridine guests. When diamidopyridine moiety was introduced into the dendrimer pocket, a thymine derivative was bound through complementary hydrogen bonding. Two different kinds of substrates, pyridine and thymine derivatives, were simultaneously accommodated in the nanoscale pocket and bimolecular guest accommodation was realized with the designed dendrimer receptor.

Biochemical Phenomena↗
PubMed2006

Proteo-dendrimers designed for complementary recognition of cytochrome c: dendrimer architecture toward nanoscale protein complexation.

"Proteo-dendrimers" in which polyanionic hepta(glutamic acids), fluorescent zinc porphyrinate cores, hydrophilic polyether surfaces, and nonpeptide hydrophobic dendrons are combined, were developed as a new series of synthetic receptors for protein recognition. They have polyanionic "patch" structures on their surfaces and undergo complementary electrostatic interactions with a positively charged cytochrome c patch, as observed in biological protein-protein recognition systems. Stability constants of the resulting supramolecular complexes were determined in phosphate buffer (pH 7) by monitoring the fluorescence quenching of the zinc porphyrinates. These proteo-dendrimer receptors exhibited higher affinities with cytochrome c proteins in aqueous solutions than with biological cytochrome b5. Furthermore, they effectively blocked complexation of biological cytochrome b5 with cytochrome c, indicating that the proteo-dendrimers and cytochrome b5 similarly occupy the polycationic patch of cytochrome c.

Cytochromes b5↗
PubMed2005

Mononuclear five-coordinate molybdenum(IV) and -(V) monosulfide complexes coordinated with dithiolene ligands: reversible redox of Mo(V)/Mo(IV) and irreversible dimerization of [MoVS]- cores to a dinuclear [MoV2(mu-S)2]2- Core.

A mononuclear five-coordinate molybdenum(IV) monosulfide complex, (Et4N)2[MoS(L)2] (L = cyclohexene-1,2-dithiolate) (1), was obtained and characterized by IR, UV-vis spectroscopic methods, and X-ray crystallography. 1 was oxidized by an equivalent ferrocenium cation to give the corresponding mononuclear molybdenum(V) complex, (Et4N)[MoS(L)2] (2), which was stable for a few minutes under a lower concentration than 0.3 mM and then further dimerized to (Et4N)2[Mo(L)2]2(mu-S)2 (3).

Journal Article↗
PubMed2005

A new series of molybdenum-(IV), -(V), and -(VI) dithiolate compounds as active site models of molybdoenzymes: preparation, crystal structures, spectroscopic/electrochemical properties and reactivity in oxygen atom transfer.

A new set of molybdenum-(IV), -(V), and -(VI) compounds containing 3,6-dichloro-1,2-benzenedithiolate (bdtCl2) were isolated and characterised by crystallographic and other spectroscopic techniques as active site models of arsenite oxidase, one of the molybdoenzymes. MoO2 compounds were prepared in high yields by reaction of MoO2Cl2 with bdtCl2, related dithiolene and thiocatecholate in methanol at low temperature. The bdtCl2 ligand particularly stabilised the MoO compounds with oxidation numbers of +4 and +5 as well as the MoO2 compound with an oxidation number of +6. The compounds (Et4N)2[MoVIO2(bdtCl2)2], (Et4N)2[MoIVO(bdtCl2)2] and (Et4N)[MoVO(bdtCl2)2] were successfully isolated, whereas (Et3NH)2[MoO2(thiocatecholate)2] gradually decomposed in acetonitrile. A distorted octahedral structure similar to that of was suggested for the structure of the active site of the oxidised form of arsenite oxidase on the basis of a comparison of their bond distances and angles. The bond distances and angles around the molybdenum(IV) atom in were similar to those around the molybdenum(IV) centre in the reduced form of arsenite oxidase. The reversible / couple exhibited a more positive redox potential than common MoO dithiolene compounds. Underwent an irreversible proton-coupled reduction process to yield. An oxygen atom transfer reaction of with triphenylphosphine afforded and triphenylphosphine oxide, and proceeded in second order as v=-d/dt[MoO2]=k[MoO2][PPh3]. The structures and properties of the oxo-bridged dinuclear compound (Et4N)2[MoVIO2(bdtCl2)]2(micro-O), a dimer of bdtCl2 and were also characterised.

Binding Sites↗
PubMed2005

Dioxo-molybdenum(VI) and mono-oxo-molybdenum(IV) complexes supported by new aliphatic dithiolene ligands: new models with weakened Mo=O bond characters for the arsenite oxidase active site.

The cis-dioxo-molybdenum(VI) complexes, [MoO2(L(H))2]2- (1b), [MoO2(L(S))(2)]2- (2b), and [MoO2(L(O))2]2- (3b) (L(H) = cyclohexene-1,2-dithiolate, L(S) = 2,3-dihydro-2H-thiopyran-4,5-dithiolate, and L(O) = 2,3-dihydro-2H-pyran-4,5-dithiolate), with new aliphatic dithiolene ligands were prepared and investigated by infrared (IR) and UV-vis spectroscopic and electrochemical methods. The mono-oxo-molybdenum(IV) complexes, [MoO(L(H))2]2- (1a), [MoO(L(S))2]2- (2a), and [MoO(L(O))2]2- (3a), were further characterized by X-ray crystal structural determinations. The IR and resonance Raman spectroscopic studies suggested that these cis-dioxo molybdenum(VI) complexes (1b-3b) had weaker Mo=O bonds than the common Mo(VI)O2 complexes. Complexes 1b-3b also exhibited strong absorption bands in the visible regions assigned as charge-transfer bands from the dithiolene ligands to the cis-MoO2 cores. Because the oxygen atoms of the cis-Mo(VI)O2 cores are relatively nucleophilic, these complexes were unstable in protic solvents and protonation might occur to produce Mo(VI)O(OH), as observed with the oxidized state of arsenite oxidase.

Binding Sites↗
PubMed2005

Visual sensing of Ca2+ ion via photoreaction of fluorenyl ester-armed cyclen.

Fluorenyl ester-armed cyclen gave fluorenone and related decomposition compounds upon photoirradiation. The reaction was effectively suppressed by the formation of an octacoordinated Ca2+ complex while Na+ and other alkali/alkaline earth metal cations had little influence. Since the production efficiency of fluorescent fluorenone related well to the concentration of the Ca2+ ion, the photoreaction of this armed cyclen offered the naked-eye detection of Ca2+ ion in aqueous samples.

Calcium↗
PubMed2005

Cholesterol-armed cyclens for helical metal complexes offering chiral self-aggregation and sensing of amino acid anions in aqueous solutions.

Cholesterol-armed cyclens worked as octadentate receptors for Na+, Ca2+, and Y3+ complexes in which four chiral cholesterol-functionalized sidearms were bundled and asymmetrically twisted above cyclen-metal complex platforms. Since the resulting helical metal complexes included chiral, hydrophobic cholesterol residues and charged, hydrophilic metal sites as well as asymmetric coordination geometries, they exhibited unique amphiphilic properties and provided chiral self-aggregates in aqueous solutions. Light scattering, fluorescence, and TEM characterizations demonstrated that Na+ complex with cholesterol-armed cyclen gave a particularly stable self-aggregate in aqueous solution and offered supramolecular environments effective for sensing and detection of amino acid anions. Various dansylamino acid derivatives (dansyl = 5-(dimethylamino)-1-naphthalenesulfonyl) were nicely accommodated in the helicate aggregates to give highly enhanced fluorescence signals, which could be detected by the naked eye at 10(-7) mol/L level. Their inclusion behaviors were analyzed by a Langmuir-type equation, indicating that enantiomer-selective inclusion occurred. MM/MD calculations and circular dichroism (CD) studies further suggested that cholesterol-armed cyclen helicates have chiral and hydrophobic cavities upon self-aggregation, in which the dansylamino acid anions were specifically accommodated. Since these helicates exhibited nonselective binding abilities in solvent extraction experiments of dansylamino acid anions, uncommon chiral recognition and sensing functions were generated by supramolecular alignments of the chiral metal helicates in the aqueous solutions.

Amino Acids↗
PubMed2005

Cytochrome c-crown ether complexes as supramolecular catalysts: cold-active synzymes for asymmetric sulfoxide oxidation in methanol.

A series of supramolecular complexes of various cytochrome c proteins with 18-crown-6 derivatives behave as cold-active synzymes in the H2O2 oxidation of racemic sulfoxides. This interesting behavior contrasts with native functionality, where the employed proteins act as electron transfer carriers. ESI-MS. UV, CD, and Raman spectroscopic characterizations reveal that four or five 18-crown-6 molecules strongly bind to the surface of the cytochrome c and also that nonnatural low-spin hexacoordinate heme structures are induced in methanol. Significantly, crown ether complexation can convert catalytically inactive biological forms to catalytically active artificial forms. Horse heart, pigeon breast, and yeast cytochromes c all stereoselectively oxidize (S)-isomers of methyl tolyl sulfoxide and related sulfoxides upon crown ether complexation. These supramolecular catalysts show the highest efficiency and enantiomer selectivity at -40 degrees C in the H202-dependent sulfoxide oxidation, while oxidative decomposition of the heme moieties predominantly occurs at room temperature. The oxidation reactivity of the employed sulfoxides is apparently related to steric constraints and electrochemical oxidation potentials of their S=O bonds. Among the cytochrome c complexes, yeast cytochrome c demonstrates the lowest catalytic activity and degradation reactivity. It has a significantly different protein sequence, suggesting that crown ether complexation effectively activates heme coordination but may additionally alter the native backbone structure. The proper combination of cytochrome c proteins, 18-crown-6 receptors, and external circumstances can be used to successfully generate "protein-based supramolecular catalysts" exhibiting nonbiological reactivities.

Animals↗
PubMed2004

Lipophilic lanthanide tris(beta-diketonate) complexes as an ionophore for Cl- anion-selective electrodes.

A series of novel anion-selective electrodes were developed by incorporating lipophilic lanthanide tris(beta-diketonates) into plasticized poly(vinyl chloride) membranes. The new electrodes exhibited high selectivity toward Cl(-) anion in the concentration range of Cl(-) anion between 1.0 x 10(-5) and 1.0 x 10(-1) mol/L with near-Nernstian slopes and practically low detection limits. They offered non-Hofmeister anion selectivity, and interestingly discriminated Cl(-) anion from NO(3)(-), ClO(4)(-), and other anions. Since the employed lanthanide tris(beta-diketonates) were confirmed to form 1:1 highly coordinated complexes with Cl(-) anion, the observed high selectivity for Cl(-) anion was attributed to the characteristics of lanthanide coordination chemistry. All the prepared sensors worked well at neutral pH with quite short response time, <30 s, and could be used for longer than four months without any significant divergence in performance.

Journal Article↗
PubMed2004

Synthesis of chiral nonracemic 1-(2-pyridinyl)ethylamines: stereospecific introduction of amino function onto the 2-pyridinylmethyl carbon center.

Stereospecific substitutions of optically pure 1-(pyridinyl)ethyl methanesulfonates with various amines are described. The reaction of (R)- or (S)-1-(2-pyridinyl)ethyl methanesulfonate with primary amines, including amino acid esters, gives N-substituted (S)- or (R)-1-(2-pyridinyl)ethylamines (4) with inversion of the configuration. Secondary cyclic amines are also reacted with (R)-2 to give the corresponding substituted amines (5) in excellent yields. Optically pure and meso triamine ligands having two pyridine rings, (S,S)-4f and meso-4f, (S,S)-9e, (S,R)-9e, and (S,S)-9f, have been prepared in stereochemically pure form by this method. Not only the substitution reaction of optically active 2 but also that of 1-(4-pyridinyl)ethyl and 1-(3-pyridinyl)ethyl methanesulfonates 11 and 14 take place stereospecifcally with inversion of the chiral center.

Journal Article↗
PubMed2003

Luminescent lanthanide complexes with stereocontrolled tris(2-pyridylmethyl)amine ligands: chirality effects on lanthanide complexation and luminescence properties.

A series of tris(2-pyridylmethyl)amines including one and two asymmetric centers were synthesized in a stereo-controlled fashion as potential ligands of lanthanide cations. The reaction of chiral pyridylethyl methanesulfonates and bis(pyridylmethyl)amines occurred via an S(N)2 mechanism with complete inversion of asymmetric centers and gave the stereocontrolled tris(2-pyridylmethyl)amines, the stereochemical purity of which was ascertained by GPC, NMR, X-ray, and polarimetry experiments. They formed stable Tb(3+) and Eu(3+) complexes having 1:1, 1:2, and 1:3 stoichiometry (metal:ligand) in CH(3)CN solutions. NMR and UV titration experiments revealed that their complexation behaviors were rarely influenced by ligand chirality but significantly affected by the nature of the counteranion and the concentration ratio of metal to ligand. The Tb(3+) and Eu(3+) complexes with these tripodal ligands exhibited characteristic luminescence spectra upon excitation for pyridine chromophores (260 nm), the intensities of which were largely dependent on the ligand chirality. The meso isomer of the disubstituted tripods particularly exhibited the enhanced terbium luminescence ca. three times more than its diastereomer and un- and monosubstituted tripods. Direct excitation at the lanthanide center had similar chirality effects on the luminescence profiles, indicating that the stereochemistry of the employed ligand largely influenced the lanthanide emitting processes. Since the ligand chirality finely modified the local coordination environments around the lanthanide center, the use of stereocontrolled ligands is applicable in design of the luminescent lanthanide complexes.

Journal Article↗
PubMed2003

Chemical activation of cytochrome c proteins via crown ether complexation: cold-active synzymes for enantiomer-selective sulfoxide oxidation in methanol.

Supramolecular complexation with 18-crown-6 significantly converted catalytically inactive cytochrome c (biological form) to catalytically active synzyme (artificial form). Although a family of cytochrome c proteins does not work as enzymes in nature, crown ether complexation modified their heme coordination structures and functionally activated them to promote the asymmetric oxidation of racemic sulfoxides at low temperature. Horse heart, pigeon breast, and yeast cytochrome c proteins were demonstrated to form supramolecular complexes with 18-crown-6 in methanol, which effectively oxidized (S)-isomers of naphthyl methyl sulfoxide, methyl tolyl sulfoxide, isopropyl phenyl sulfoxide, benzyl methyl sulfoxide, and 4-methylsulfenyl acetophenone at -40 degrees C. Because horse heart and pigeon breast cytochromes c exhibited more efficient and higher enantiomer-selective activities than yeast cytochrome c, a proper combination of cytochrome c and crown ether offers a new class of cold-active synzymes promoting nonbiological asymmetric oxidation.

Crown Ethers↗