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Hyojoon Kim

Publications and source records attributed to Hyojoon Kim.

8 recordsLinked to original sources
PubMed2006

Solvation and proton transfer in polar molecule nanoclusters.

Proton transfer in a phenol-amine complex dissolved in polar molecule nanoclusters is investigated. The proton transfer rates and mechanisms, as well as the solvation of the complex in the cluster, are studied using both adiabatic and nonadiabatic dynamics. The phenol-amine complex exists in ionic and covalent forms and as the size of the cluster increases the ionic form gains stability at the expense of the covalent form. Both the adiabatic and nonadiabatic transfer reaction rates increase with cluster size. Given a fixed cluster size, the stability of the covalent state increases with increasing temperature. The proton transfer rates do not change monotonously with an increase in temperature. A strong correlation between the solvent polarization reaction coordinate and the location of the phenol-amine complex in the cluster is found. The ionic form of the complex strongly prefers the interior of the cluster while the covalent form prefers to lie on the cluster surface.

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PubMed2006

Quantum simulation of solution phase intramolecular electron transfer rates in betaine-30.

Mixed quantum-classical atomistic simulations have been carried out to investigate the mechanistic details of excited state intramolecular electron transfer in a betaine-30 molecule in acetonitrile. The key electronic degrees of freedom of the solute molecule are treated quantum mechanically using the semiempirical Pariser-Parr-Pople Hamiltonian, including the solvent influence on electronic structure. The intramolecular vibrational modes are also treated explicitly at a quantum level, with the remaining elements treated classically using empirical potentials. The electron-transfer rate, corresponding to S1 --> S0 relaxation, is evaluated via time-dependent perturbation theory with the explicit inclusion of the dynamics of solvation and intramolecular conformation. The calculations reveal that, while solvation dynamics is critical to the rate, the intramolecular torsional dynamics also plays an important role. The importance of the use of multiple high-frequency quantum modes is also discussed.

Betaine↗
PubMed2006

Analysis of kinetic isotope effects for nonadiabatic reactions.

Factors influencing the rates of quantum mechanical particle transfer reactions in many-body systems are discussed. The investigations are carried out on a simple model for a proton transfer reaction that captures generic features seen in more realistic models of condensed phase systems. The model involves a bistable quantum oscillator coupled to a one-dimensional double-well reaction coordinate, which is in turn coupled to a bath of harmonic oscillators. Reactive-flux correlation functions that involve quantum-classical Liouville dynamics for chemical species operators and quantum equilibrium sampling are used to estimate the reaction rates. Approximate analytical expressions for the quantum equilibrium structure are derived. Reaction rates are shown to be influenced significantly by both the quantum equilibrium structure and nonadiabatic dynamics. Nonadiabatic dynamical effects are found to play the major role in determining the magnitude of the kinetic isotope effect for the model transfer reaction.

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PubMed2006

Evaluation of quantum correlation functions from classical data: Anharmonic models.

The previously introduced method of evaluating quantum mechanical time correlation functions using as input only classical simulation data is generalized and applied to two anharmonic model systems, as a further test. The quantum correction approach utilizes the relation between a general quantum correlation function and its classical analog. For the tested models, we obtain numerical results of nonlinear correlation functions with comparable accuracy to that of the centroid molecular dynamics method, although the present method is much simpler to implement and not limited to real valued quantum correlation functions.

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PubMed2005

Nonadiabatic quantum-classical reaction rates with quantum equilibrium structure.

Time correlation function expressions for quantum reaction-rate coefficients are computed in a quantum-classical limit. This form for the correlation function retains the full quantum equilibrium structure of the system in the spectral density function but approximates the time evolution of the operator by quantum-classical Liouville dynamics. Approximate analytical expressions for the spectral density function, which incorporate quantum effects in the many-body environment and reaction coordinate, are derived. The results of numerical simulations of the reaction rate are presented for a reaction model in which a two-level system is coupled to a bistable oscillator which is, in turn, coupled to a bath of harmonic oscillators. The nonadiabatic quantum-classical dynamics is simulated in terms of an ensemble of surface-hopping trajectories and the effects of the quantum equilibrium structure on the reaction rate are discussed.

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PubMed2005

Transport properties of quantum-classical systems.

Correlation function expressions for calculating transport coefficients for quantum-classical systems are derived. The results are obtained by starting with quantum transport coefficient expressions and replacing the quantum time evolution with quantum-classical Liouville evolution, while retaining the full quantum equilibrium structure through the spectral density function. The method provides a variety of routes for simulating transport coefficients of mixed quantum-classical systems, composed of a quantum subsystem and a classical bath, by selecting different but equivalent time evolution schemes of any operator or the spectral density. The structure of the spectral density is examined for a single harmonic oscillator where exact analytical results can be obtained. The utility of the formulation is illustrated by considering the rate constant of an activated quantum transfer process that can be described by a many-body bath reaction coordinate.

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PubMed2004

Diffusion-influenced reversible geminate recombination in one dimension. III. Field effect on the excited-state reaction.

We obtain exact analytic solutions of the diffusion-influenced excited-state reversible geminate recombination reaction, A* + B<-->(AB)*, with two different lifetimes and quenching under the influence of a constant external field in one dimension. These fundamental solutions generalize two previous results [Kim et al., J. Chem. Phys. 111, 3791 (1999); 114, 3905 (2001)] and provide us with the insight necessary to analyze their specific relations and asymptotic kinetic transition behaviors. We find that the number of kinetic transitions can be changed due to interplay between the field strength and lifetimes. Unlike the previous works, the number of lifetime dependent transitions is found to be one or zero. On the other hand, the number of the field dependent transitions becomes two, one, or zero. We find a new pattern of kinetic transition e(t)-->t(-1/2)-->e(t) when there is only one field dependent transition.

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