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I Roterman

Publications and source records attributed to I Roterman.

26 records · Page 2Linked to original sources

Bis azo dyes--studies on the mechanism of complex formation with IgG modulated by heating or antigen binding.

The mechanism of binding of azo dyes (bis azo) to immunoglobulin G of altered conformation, induced by heating or interaction with antigen was analysed in this work. Azo dyes: Congo Red, Evans Blue and Trypan Blue were selected for these studies. The molecules of Congo Red and Evans Blue associate readily in water and exist as polymolecular micellar species of liquid crystalline organization. Such organization of molecules appeared necessary for these dyes to interact with antibodies and to affect the formation of immune complex. It was proved by studying the properties of isomeric dyes Evans Blue and Trypan Blue, whose ability to form polymolecular conglomerates in water differs, being high for Evans Blue and low for Trypan Blue. The dyes seem to influence the formation of the immune complex generally by interacting with individual immunoglobulin molecules. The rate of exchange of dye molecules in conglomerate bound to protein varies and is the lowest for the portion of molecules which are engaged directly in the complex with protein. Electron microscopic studies also confirmed the polymolecular form of the dye in the dye-protein complex. The computational simulation of dye-dye and dye-protein interaction was performed in a model system. The micelle in the system was represented by three molecules of Congo Red. The peptide loop composed of amino acids 68-88 originating from VL IgG domain, was selected to represent protein. Amino acid side chains of this fragment were reduced to C beta. The best fitness was found for peptide chains of twisted beta conformation and independently optimized conformation of the dye in a form of "twisted ribbon" micelle. It was concluded that the IgG domains become accessible for penetration of the dye after being relaxed in the result of heating or interaction with the antigen.

Agglutination Tests↗

The effect of azo dyes on the formation of immune complexes.

The azo dyes were found to react with antibodies aggregated in immune complex in a similar way to heat-aggregated IgG. The whole micelles of the dye, instead of single molecules, are fixed to antibodies. In a consequence, the number of dye molecules, determined per one antibody molecule, differs but may be as large as 50-60. The dye, bound to antibody complexed with antigen, enhances its affinity to antigen. The increase of affinity, expressed as the relation of changed by the dye association constants to its initial value, was found to be 6.27 x 10(8):1. The corresponding energy change, calculated from this value, equals 11.97 kcal/mol. The resulting amount of antibodies, bound to antigen, is essentially enlarged. The enhancement effect does not seem to depend on the number of antibodies bound to the red cell up to about 3 x 10(4) molecules. It indicates that in this range a single antibody binding may be affected by the dye. The situation changes at growing antibody densities in the complex when the dye-antibody network, formed by crossbridged molecules, additionally increases the stability of the immunoglobulin molecules engaged in the complex.

Animals↗

[Clinical pattern of secondary dental caries in relation to tissue defect class and type of filling material].

The purpose of the study was assessment of the development of secondary caries in relation to filling type in various classes of carietic dental tissue defects. The study was carried out in 320 patients aged 16 to 55 years and 3884 teeth were examined. Out of this material 2423 teeth were filled: with amalgam--853, with silica cement--1197, with composites--373. Secondary caries was found in 1341 teeth (56.34%). In teeth filled with amalgam in classes I and II of carietic defect in women secondary caries was noted in 27.26% and 47.73% of cases respectively. In case of composite filling secondary caries was found in 72.12% and 81.82% of fillings. In class III of carietic defects in women with fillings with composite materials secondary caries developed in 48.8%, and after filling with silica preparations in 55%. In class IV secondary caries was present at 45% of composite fillings and 77.78% of silica cement fillings. In class V secondary caries was found at 11.42% of amalgam fillings and 36.67% of composite fillings, and in 45% at silica cement fillings. Similar values were found in men.

Adolescent↗

The formation of soluble heat IgG aggregates for immunological studies.

The structural alteration associated with the aggregation of heated immunoglobulin molecules and the triggering of their effector reactivity was studied using soluble aggregate derivatives. Large but still soluble aggregate species were obtained by the formation of complexes of heated immunoglobulin molecules with azo dyes - Congo Red or Trypan Blue. Exposed peptide fragments in the area rearranged on heating were identified by short-lasting proteolysis. The altered area was in this way localized in the Fab portion of the heavy chain. The heavy chain fragment bordered by disulphides which stabilize the domains V and CH1 was indicated as a most probable peptide portion forming the link between the aggregating molecules. The obtained dye-aggregate species retain their effector activity. The effect of structural alterations in the Fab fragment on the Fc remains unclear.

Binding Sites↗

The structure of the hinge region in Fab-Fc recombinant immunoglobulins and its relation to the effector activity of these molecules.

The arrangement of peptides which form the hinge region in Fab-Fc recombinant immunoglobulins, restored artificially from Fab and Fc fragments was approached by computation. The architecture of this region in the symmetric (Fab')2-Fc derivatives and in the asymmetric (Fab')1-Fc differs to a considerable extent. In (Fab')2-Fc species but not in (Fab')1-Fc the preferable arrangement appeared to be stabilized predominantly by the mutual interaction of symmetric hinge peptides. It was concluded that the resulted by this interaction rotational restrictions may eventually induce the structural transformations in the molecule, influencing the effector activity of Fc.

Amino Acid Sequence↗

Globular proteins, GU wobbling, and the evolution of the genetic code.

It has previously been shown that the formation of GU base pairs in RNA copying processes leads to an accumulation of G and U in both strands of the replicating RNA, which results in a non-random distribution of base triplets. In the present paper, this distribution is calculated, and, using the X2-test, a correlation between the distribution of triplets and the amino acid composition of the evolutionarily conservative interior regions of selected globular proteins is established. It is suggested that GU wobbling in early replication of RNA could have led to the observed amino acid composition of present-day protein interiors. If this hypothesis is correct, then GU wobbling must have been very extensive in the imprecisely replicating RNA, even reaching values close to the critical for stability of its double-helical structure. Implications of the hypothesis both for the evolution of the genetic code and of proteins are discussed.

Biological Evolution↗

Why Congo red binding is specific for amyloid proteins - model studies and a computer analysis approach.

BACKGROUND: The complexing of Congo red in two different ligand forms - unimolecular and supramolecular (seven molecules in a micelle) - with eight deca-peptides organized in a b-sheet was tested by computational analysis to identify its dye-binding preferences. Polyphenylananine and polylysine peptides were selected to represent the specific side chain interactions expected to ensure particularly the stabilization of the dye-protein complex. Polyalanine was used to verify the participation of non-specific backbone-derived interactions. MATERIAL AND METHODS: The initial complexes for calculation were constructed by intercalating the dye between the peptides in the middle of the beta-sheet. The long axis of the dye molecule (in the case of unimolecular systems) or the long axis of the ribbon-like micelle (in the case of the supramolecular dye form) was oriented parallel to the peptide backbone. This positioning maximally reduced the exposure of the hydrophobic diphenyl (central dye fragment) to water. In general the complexes of supramolecular Congo red ligands appeared more stable than those formed by individual dye molecules. Specific interactions (electrostatic and/or ring stacking) dominated as binding forces in the case of the single molecule, while non-specific surface adsorption seemed decisive in complexing with the supramolecular ligand. RESULTS: Both the unimolecular and supramolecular versions of the dye ligand were found to be likely to form complexes of sufficient stability with peptides. The low stability of the protein and the gap accessible to penetration in the peptide sheet seem sufficient for supramolecular ligand binding, but the presence of positively charged or hydrophobic amino acids may strengthen binding significantly. CONCLUSIONS: The need for specific interaction makes single-molecule Congo red binding rather unusual as a general amyloid protein ligand. The structural feature of Congo red, which enables specific and common interaction with amyloid proteins, probably derives from the ribbon-like self-assembled form of the dye.

Amyloid beta-Peptides↗