Biomedical subjects

Ibrahim Yildiz

Publications and source records attributed to Ibrahim Yildiz.

4 recordsLinked to original sources

PubMed2006

pH-sensitive ligand for luminescent quantum dots.

We developed a strategy to switch the luminescence of semiconductor quantum dots with chemical stimulations. It is based on the photoinduced transfer of either energy from CdSe-ZnS core-shell quantum dots to [1,3]oxazine ligands or electrons from the organic to the inorganic components. The organic ligands incorporate a dithiolane anchoring group, an electron-rich indole, and a 4-nitrophenylazophenoxy chromophore in their molecular skeleton. Their adsorption on the surface of the quantum dots results in partial luminescence quenching. Electron transfer from the indole fragment to the nanoparticles is mainly responsible for the decrease in luminescence intensity. Upon addition of base, the [1,3]oxazine ring of the ligands opens to generate a 4-nitrophenylazophenolate chromophore, which absorbs in the range of wavelengths where the quantum dots emit. This transformation activates an energy-transfer pathway from the excited nanoparticles to the ligands. In addition, the oxidation potential of the ligand shifts in the negative direction, improving the efficiency of electron transfer. The overall result is a decrease in the luminescence quantum yield of 83%. Addition of acid also opens the [1,3]oxazine ring of the ligands. However, the resulting 4-nitrophenylazophenol does not absorb in the visible region and cannot accept energy from the excited nanoparticles. Furthermore, the oxidation potential shifts in the positive direction, lowering the electron-transfer efficiency. In fact, the luminescence quantum yield increases by 33% as a result of this transformation. These changes are fully reversible and can be exploited to probe the pH of aqueous solutions from 3 to 11. Indeed, our sensitive quantum dots adjust their luminescence in response to variations in pH within this particular range of values. Thus, our general design strategy can eventually lead to the development of pH-sensitive luminescent probes for biomedical applications based on the unique photophysical properties of semiconductor quantum dots.

Journal Article↗

PubMed2006

A mechanism to signal receptor-substrate interactions with luminescent quantum dots.

Semiconductor quantum dots are becoming valuable analytical tools for biomedical applications. Indeed, their unique photophysical properties offer the opportunity to design luminescent probes for imaging and sensing with unprecedented performance. In this context, we have identified operating principles to transduce the supramolecular association of complementary receptor-substrate pairs into an enhancement in the luminescence of sensitive quantum dots. Our mechanism is based on the electrostatic adsorption of cationic quenchers on the surface of anionic quantum dots. The adsorbed quenchers suppress efficiently the emission character of the associated nanoparticles on the basis of photoinduced electron transfer. In the presence of target receptors able to bind the quenchers and prevent electron transfer, however, the luminescence of the quantum dots is restored. Thus, complementary receptor-substrate pairs can be identified with luminescence measurements relying on our design logic. In fact, we have demonstrated with a representative example that our protocol can be adapted to signal protein-ligand interactions.

Ligands↗

PubMed2006

pH-sensitive quantum dots.

We have designed organic ligands able to adsorb on the surface of CdSe-ZnS core-shell quantum dots and switch the luminescence of the inorganic nanoparticles in response to hydroxide anions. These compounds incorporate a [1,3]oxazine ring within their molecular skeleton, which reacts with the nucleophilic hydroxide anion to generate a 4-nitrophenylazophenolate chromophore. The chromogenic transformation activates an energy transfer pathway from the quantum dot to the adsorbed chromophores. As a result, the luminescence intensity of the coated nanoparticles decreases significantly in the presence of hydroxide anions. In fact, this mechanism can be exploited to probe the pH of aqueous solutions. Indeed, an increase in pH from 7.1 to 8.5 translates into a 35% decrease in the luminescence intensity of the sensitive quantum dots. Thus, our operating principles for luminescence switching can efficiently transduce a chemical stimulation into a change in the emissive response of semiconductor nanoparticles. In principle, this protocol can be extended from hydroxide anions to other target analytes with appropriate adjustments in the molecular design of the chromogenic ligands. It follows that luminescent chemosensors, based on the unique photophysical properties of semiconductor quantum dots, can eventually evolve from our design logic and choice of materials.

Journal Article↗

PubMed2006

A computational study on the amine-oxidation mechanism of monoamine oxidase: insight into the polar nucleophilic mechanism.

The proposed polar nucleophilic mechanism of MAO was investigated using quantum chemical calculations employing the semi-empirical PM3 method. In order to mimic the reaction at the enzyme's active site, the reactions between the flavin and the p-substituted benzylamine substrate analogs were modeled. Activation energies and rate constants of all the reactions were calculated and compared with the published experimental data. The results showed that electron-withdrawing groups at the para position of benzylamine increase the reaction rate. A good correlation between the log of the calculated rate constants and the electronic parameter (sigma) of the substituent was obtained. These results agree with the previous kinetic experiments on the effect of p-substituents on the reduction of MAO-A by benzylamine analogs. In addition, the calculated rate constants showed a correlation with the rate of reduction of the flavin in MAO-A. In order to verify the results obtained from the PM3 method single-point B3LYP/6-31G*//PM3 calculations were performed. These results demonstrated a strong reduction in the activation energy for the reaction of benzylamine derivatives having electron-withdrawing substituents, which is in agreement with the PM3 calculations and the previous experimental QSAR study. PM3 and B3LYP/6-31G* energy surfaces were obtained for the overall reaction of benzylamine with flavin. Results suggest that PM3 is a reasonable method for studying this kind of reaction. These theoretical findings support the proposed polar nucleophilic mechanism for MAO-A.

Amines↗