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Biomedical subjects

Idan Tuval

Publications and source records attributed to Idan Tuval.

7 recordsLinked to original sources

Embryonic nodal flow and the dynamics of nodal vesicular parcels.

We address with fluid-dynamical simulations using direct numerical techniques three important and fundamental questions with respect to fluid flow within the mouse node and left-right development. First, we consider the differences between what is experimentally observed when assessing cilium-induced fluid flow in the mouse node in vitro and what is to be expected in vivo. The distinction is that in vivo, the leftward fluid flow across the mouse node takes place within a closed system and is consequently confined, while this is no longer the case on removing the covering membrane and immersing the embryo in a fluid-filled volume to perform in vitro experiments. Although there is a central leftward flow in both instances, we elucidate some important distinctions about the closed in vivo situation. Second, we model the movement of the newly discovered nodal vesicular parcels (NVPs) across the node and demonstrate that the flow should indeed cause them to accumulate on the left side of the node, as required for symmetry breaking. Third, we discuss the rupture of NVPs. Based on the biophysical properties of these vesicles, we argue that the morphogens they contain are likely not delivered to the surrounding cells by their mechanical rupture either by the cilia or the flow, and rupture must instead be induced by an as yet undiscovered biochemical mechanism.

Animals↗

Control of particles in microelectrode devices.

The impact of the convective fluid motion induced by the electric fields on the dielectrophoretic manipulation of particles is investigated theoretically and experimentally. By means of a simplified model a channel with a periodic array of microelectrodes we show that electroconvective flows induce the formation of traps for particles, providing a dynamical mechanism to control microparticles in such devices. We demonstrate experimentally the theoretically predicted dynamical phenomena.

Journal Article↗

Bacterial swimming and oxygen transport near contact lines.

Aerobic bacteria often live in thin fluid layers near solid-air-water contact lines, in which the biology of chemotaxis, metabolism, and cell-cell signaling is intimately connected to the physics of buoyancy, diffusion, and mixing. Using the geometry of a sessile drop, we demonstrate in suspensions of Bacillus subtilis the self-organized generation of a persistent hydrodynamic vortex that traps cells near the contact line. Arising from upward oxygentaxis and downward gravitational forcing, these dynamics are related to the Boycott effect in sedimentation and are explained quantitatively by a mathematical model consisting of oxygen diffusion and consumption, chemotaxis, and viscous fluid dynamics. The vortex is shown to advectively enhance uptake of oxygen into the suspension, and the wedge geometry leads to a singularity in the chemotactic dynamics near the contact line.

Bacillus subtilis↗

Chiral symmetry breaking during crystallization: an advection-mediated nonlinear autocatalytic process.

When a chiral chemical compound crystallizes from solution or from its melt, stirring often results in the formation of crystals of just one of the two possible enantiomers, while without fluid advection both enantiomers are formed. We demonstrate with simulations of the dynamics of the system that secondary nucleation is a nonlinear autocatalytic phenomenon that can explain these observations. Furthermore, we present theoretical arguments and experimental results that suggest that at the microscale the mechanism of secondary nucleation is whisker crystal growth and dispersion in the fluid flow.

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Fluid-dynamical basis of the embryonic development of left-right asymmetry in vertebrates.

Experimental work in developmental biology has recently shown in mice that fluid flow driven by rotating cilia in the node, a structure present in the early stages of growth of vertebrate embryos, is responsible for determining the normal development of the left-right axis, with the heart on the left of the body, the liver on the right, and so on. The role of physics, in particular, of fluid dynamics, in the process is one of the important questions that remain to be answered. We show with an analysis of the fluid dynamics of the nodal flow in the developing embryo that the leftward flow that has been experimentally observed may be produced by the monocilia driving it being tilted toward the posterior. We propose a model for morphogen transport and mixing in the nodal flow and discuss how the development of left-right asymmetry might be initiated.

Animals↗

Bubbling and on-off intermittency in bailout embeddings.

We establish and investigate the conceptual connection between the dynamics of the bailout embedding of a Hamiltonian system and the dynamical regimes associated with the occurrence of bubbling and blowout bifurcations. The roles of the invariant manifold and the dynamics restricted to it, required in bubbling and blowout bifurcating systems, are played in the bailout embedding by the embedded Hamiltonian dynamical system. The Hamiltonian nature of the dynamics is precisely the distinctive feature of this instance of a bubbling or blowout bifurcation. The detachment of the embedding trajectories from the original ones can thus be thought of as transient on-off intermittency, and noise-induced avoidance of some regions of the embedded phase space can be recognized as Hamiltonian bubbling.

Journal Article↗

Bailout embeddings and neutrally buoyant particles in three-dimensional flows.

We use the bailout embeddings of three-dimensional volume-preserving maps to study qualitatively the dynamics of small spherical neutrally buoyant impurities suspended in a time-periodic incompressible fluid flow. The accumulation of impurities in tubular vortical structures, the detachment of particles from fluid trajectories near hyperbolic invariant lines, and the formation of nontrivial three-dimensional structures in the distribution of particles are predicted.

Journal Article↗