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Ignasi Mata

Publications and source records attributed to Ignasi Mata.

8 recordsLinked to original sources
PubMed2006

Contributions to the application of the transferability principle and the multipolar modeling of H atoms: electron-density study of L-histidinium dihydrogen orthophosphate orthophosphoric acid. I.

The electron density of L-histidinium dihydrogen orthophosphate orthophosphoric acid has been determined from X-ray and neutron diffraction data at low temperature (120 K). Topological analysis of the electron density has been used to analyse the effect of the multipolar refinement strategy on the electron-density model in the hydrogen-bonding regions. The electron density at low temperature has also been used to acquire high-quality experimental thermal parameters at room temperature using the transferability principle. Molecular vibrations, TLS and normal mode analysis are discussed and studied at both temperatures.

Journal Article↗
PubMed2005

Topological analysis of the electron density distribution in perturbed systems. I. Effect of charge on the bond properties of hydrogen fluoride.

Within the framework of the molecular orbital (MO) theory, the addition of one electron to the 4sigma antibonding orbital of the neutral (F...H) system or the removal of one electron from its pi nonbonding orbitals, leading to (F...H)- and to (F...H)+, has permitted the investigation of these charge perturbations on the bond properties of the hydrogen fluoride molecule by using the topological analysis of rho(r). For (F...H), (F...H)-, and (F...H)+, the topological and energetic properties calculated at the F...H bond critical point (BCP) have been related to the 3sigma bonding molecular orbital (BMO) distribution, as this orbital is the main contributor to rho(r) at the interatomic surface. The analysis has been carried out at several F...H internuclear distances, ranging from 0.8 to 3.0 A. As far as the BMO distribution results from its interaction with the average Coulomb and exchange potential generated by the charge filling the other MOs, and in particular by the pi and 4sigma electrons, the comparison between the BCP properties calculated for the charged systems and those corresponding to the neutral one permits the interpretation of the differences in terms of the charge perturbation on BMO. Along with the BCP properties of (F...H), (F...H)-, and (F...H)+, the interaction energy magnitudes of these systems have been also calculated within the same range of internuclear distances, indicating that the applied perturbations do not break the F-H bond but soften it, giving rise to the stable species (F-H)- and (F-H)+. Comparing the three systems at their equilibrium geometries, the most stable configuration, which corresponds to the unperturbed (F...H) system, shows the highest quantity and the most locally concentrated charge density distribution, along with the largest total electron energy density magnitude, at the interatomic surface as a consequence of the BMO contraction toward the fluorine nucleus in (F...H)+ and of the BMO expansion toward both nuclei in (F...H)-. On the other hand, if the comparison is carried out at the equilibrium distance of (F...H) (d(eq)0), this one exhibits both the smallest total energy density magnitude and the largest quantity of bonding charge at the interatomic surface. Hence, being the signature of the most stable configuration, the characteristic magnitudes of the neutral system rho(d(eq)0), inverted triangle2 rho(d(eq)0), and H(d(eq)0) appear as boundary conditions at the interatomic surface of its unperturbed and relaxed electron distribution.

Electrons↗
PubMed2005

Magneto-structural correlations in binuclear copper(II) compounds bridged by a ferrocenecarboxylato(-1) and an hydroxo- or methoxo-ligands.

The syntheses, characterization and X-ray crystal structures of the first two examples of asymmetrically bridged dinuclear copper(ii) complexes containing a ferrocenecarboxylato ligand and a methoxo group in [{Cu(dmen)}2(micro-OMe){micro-O2C(eta5-C5H4)Fe(eta5-C5H5)}](ClO4)2, 1, (dmen=N,N-dimethylethylenediamine) or an hydroxo group in [{Cu(tmen)}2(micro-OH){micro-O2C(eta5-C5H4)Fe(eta5-C5H5)}](ClO4)2, 2 , (tmen=N,N,N'N'-tetramethylethylenediamine) are reported. Magneto-chemical studies revealed that 1 and 2 exhibit opposite superexchange interactions between the two Cu(II) paramagnetic centers: an antiferromagnetic coupling (J = -11 cm(-1)) in 1 and a ferromagnetic interaction (J = +29 cm(-1)) in 2. The results obtained from these studies suggest that the weak interactions between the Cu(II) ions and the perchlorate anions detected in the crystal structures are important to introduce significant distortions in the heterobridged [Cu2(micro-OR){micro-O2C(eta5-C5H4)Fe(eta5-C5H5)}]2+ cores of 1 and 2, which clearly affect the nature and strength of the superexchange interactions. Computational studies based on density functional theory and ab initio multiconfigurational second-order perturbation theory (CASPT2) calculations have also been performed in order to rationalize the magnetic behaviour of 1 and 2. The magneto-structural correlations for complexes containing the [Cu(micro-OR)(micro-O2CR')Cu] core are discussed, and the relevance of the out-of-plane angle of the R group with the Cu(micro-OR)Cu plane established.

Journal Article↗
PubMed2005

Preparation, solid-state characterization, and computational study of a crown ether attached to a squaramide.

[structure: see text] Crystals of a disecondary squaramide covalently linked to a crown ether presents a great variety of inter- and intramolecular nonbonded interactions including C-H/pi contacts, C-H...O and N-H...O hydrogen bonds, and pi-pi stacking between squaramide rings. Latter interaction, the stacking between squaramide rings, can be considered as an experimental evidence for the proposed aromaticity of squaramide when it is forming hydrogen bonds, either as acceptor or donor.

Journal Article↗
PubMed2003

Synthesis, structure and nuclease properties of several ternary copper(II) peptide complexes with 1,10-phenanthroline.

Three new ternary peptide-Cu(II)-1,10-phenanthroline (phen) complexes, [Cu(L-ala-gly)(phen)].3.5H(2)O 1, [Cu(L-val-gly)(phen)] 2 and [Cu(gly-L-trp)(phen)].2H(2)O 3, have been prepared and structurally characterised. These compounds exist as distorted square pyramidal complexes with the five co-ordination sites occupied by the tridentate peptide dianion and the two heterocyclic nitrogens of the phenanthroline ligand. The bulk of the lateral chain in the peptide moiety determines the relative disposition of the phen ligand. Thus, in [Cu(L-val-gly)(phen)] 2, the phenanthroline plane is deviated towards the opposite side of the isopropyl group of the L-valine moiety. On the other hand, in [Cu(gly-L-trp)(phen)].2H(2)O 3 the absence of stacking interactions between phen and indole rings and the presence of an intramolecular CH...pi interaction should be pointed out. These complexes exhibit significant differences in their nuclease activity which depends on the nature of the peptidic moiety, the complex [Cu(gly-L-trp) (phen)].2H(2)O 3 being the most active.

Copper↗
PubMed2003

Comparison of electron density properties in frozen and relaxed electronic distributions.

Two kinds of electron densities for several small molecules (H(2), FH, CH(3)CH(3), CH(3)NH(2), CH(3)OH, and CH(3)F) have been generated for a wide range of bond distances. The first one, as the sum of the electron density of the isolated fragments, and the second one by optimizing the electron density at each given geometrical disposition. A number of properties of this two electronic distributions have been compared (position of the bond critical points, electron density, Laplacian, curvatures, and local energies). The differences, associated to the bond formation, are found to be very important for most of the cases.

Journal Article↗
PubMed2002

A comparative analysis of mono- and disaccharide benzyl fucopyranosides.

The syntheses and X-ray analyses of two fucopyranosides, the monosaccharide benzyl 3,4-di-O-acetyl-2-hydroxy-beta-D-fucopyranoside, C(17)H(22)O(7), and the disaccharide 1-benzyl O-(2,3-di-O-acetyl-4,6-O-benzylidene-beta-D-glucopyranosyl)-(1-->2)-3,4-O-isopropylidene-beta-D-fucopyranoside, C(33)H(40)O(12), are described. The different substituents induce small conformational changes on the fucopyranoside ring. However, the conformation of the benzyl group varies from (+)gauche for the monosaccharide to synperiplanar for the disaccharide.

Carbohydrate Conformation↗