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Biomedical subjects

Igor S Aranson

Publications and source records attributed to Igor S Aranson.

10 recordsLinked to original sources

Theory of self-assembly of microtubules and motors.

We derive a model describing spatiotemporal organization of an array of microtubules interacting via molecular motors. Starting from a stochastic model of inelastic polar rods with a generic anisotropic interaction kernel, we obtain a set of equations for the local rods concentration and orientation. At large enough mean density of rods and concentration of motors, the model describes an orientational instability. We demonstrate that the orientational instability leads to the formation of vortices and (for large density and/or kernel anisotropy) asters seen in recent experiments. We derive the specific form of the interaction kernel from the detailed analysis of microscopic interaction of two filaments mediated by a moving molecular motor and extend our results to include variable motor density and motor attachment to the substrate.

Biomechanical Phenomena↗

Transverse instability of avalanches in granular flows down an incline.

Avalanche experiments on an erodible substrate are analyzed using the "partial fluidization" model of dense granular flows. The model identifies a family of propagating solitonlike avalanches with shape and velocity controlled by the inclination angle and the depth of the substrate. At high inclination angles, the solitons display a transverse instability, followed by coarsening and fingering similar to recent experimental observation. A primary cause for the transverse instability is directly related to the dependence of the soliton velocity on the granular mass trapped in the avalanche.

Journal Article↗

Pattern formation of microtubules and motors: inelastic interaction of polar rods.

We derive a model describing spatiotemporal organization of an array of microtubules interacting via molecular motors. Starting from a stochastic model of inelastic polar rods with a generic anisotropic interaction kernel we obtain a set of equations for the local rods concentration and orientation. At large enough mean density of rods and concentration of motors, the model describes orientational instability. We demonstrate that the orientational instability leads to the formation of vortices and (for large density and/or kernel anisotropy) asters seen in recent experiments.

Computer Simulation↗

Dendritic flux avalanches and nonlocal electrodynamics in thin superconducting films.

We report a mechanism of nonisothermal dendritic flux penetration in superconducting films. Our numerical and analytical analysis of coupled nonlinear Maxwell and thermal diffusion equations shows that dendritic flux pattern formation results from spontaneous branching of propagating flux filaments due to nonlocal magnetic flux diffusion and positive feedback between flux motion and Joule heating. The branching is triggered by a thermomagnetic edge instability, which causes stratification of the critical state. The resulting distribution of thermomagnetic microavalanches is not universal, because it depends on a spatial distribution of defects. Our results are in good agreement with experiments on Nb films.

Journal Article↗

Stick-slip dynamics of a granular layer under shear.

Stick-slip regime of shear granular flows is studied theoretically and numerically. Numerical experiments are carried out for a thin Couette cell using soft-particle molecular dynamics code in two dimensions. We apply order parameter theory of partially fluidized granular flows and find a good agreement with simulations and experiments by Nasuno et al.

Journal Article↗

Partially fluidized shear granular flows: continuum theory and molecular dynamics simulations.

The continuum theory of partially fluidized shear granular flows is tested and calibrated using two-dimensional soft particle molecular dynamics simulations. The theory is based on the relaxational dynamics of the order parameter that describes the transition between static and flowing regimes of granular material. We define the order parameter as a fraction of static contacts among all contacts between particles. We also propose and verify by direct simulations the constitutive relation based on the splitting of the shear stress tensor into a"fluid part" proportional to the strain rate tensor, and a remaining "solid part." The ratio of these two parts is a function of the order parameter. The rheology of the fluid component agrees well with the kinetic theory of granular fluids even in the dense regime. Based on the hysteretic bifurcation diagram for a thin shear granular layer obtained in simulations, we construct the "free energy" for the order parameter. The theory calibrated using numerical experiments with the thin granular layer is applied to the surface-driven stationary two-dimensional granular flows in a thick granular layer under gravity.

Journal Article↗

Order parameter description of stationary partially fluidized shear granular flows.

We carry out a detailed comparison of soft-particle molecular dynamics simulations with the theory of partially fluidized shear granular flows. We verify by direct simulations a constitutive relation based on the separation of the shear stress tensor into a fluid part proportional to the strain rate tensor, and a remaining solid part. The ratio of these two components is determined by the order parameter. Based on results of the simulations we construct the "free energy" function for the order parameter. We also present the simulations of the stationary deep 2D granular flows driven by an upper wall and compare it with the continuum theory.

Journal Article↗

Model of coarsening and vortex formation in vibrated granular rods.

Neicu et al. observed experimentally spontaneous formation of the long-range orientational order and large-scale vortices in a system of vibrated macroscopic rods. We propose a phenomenological theory of this phenomenon based on a coupled system of equations for local rods density and tilt. The density evolution is described by the modified Cahn-Hilliard equation, while the tilt is described by the Ginzburg-Landau type equation. Our analysis shows that, in accordance with the Cahn-Hilliard dynamics, islands of the ordered phase appear spontaneously and grow due to coarsening. The generic vortex solutions of the Ginzburg-Landau equation for the tilt correspond to the vortical motion of the rods around the cores which are located near the centers of the islands.

Journal Article↗

Vortex glass and vortex liquid in oscillatory media.

We study the disordered, multispiral solutions of two-dimensional oscillatory media for parameter values at which the single-spiral/vortex solution is fully stable. Using the complex Ginzburg-Landau (CGLE) equation, we show that these states, heretofore believed to be static, actually evolve extremely slowly. This is achieved via a reduction of the CGLE to the evolution of the sole vortex coordinates. This true defect-mediated turbulence occurs in two distinct phases, a vortex liquid characterized by normal diffusion of spirals, and a slowly relaxing, intermittent, "vortex glass."

Journal Article↗

Continuum theory of partially fluidized granular flows.

A continuum theory of partially fluidized granular flows is developed. The theory is based on a combination of the equations for the flow velocity and shear stresses coupled with the order-parameter equation which describes the transition between the flowing and static components of the granular system. We apply this theory to several important granular problems: avalanche flow in deep and shallow inclined layers, rotating drums, and shear granular flows between two plates. We carry out quantitative comparisons between the theory and experiment.

Journal Article↗