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Ivan Holoubek

Publications and source records attributed to Ivan Holoubek.

At least 19 recordsLinked to original sources

Residues of organochlorinated pesticides in soils from the Czech Republic.

National POPs inventories carried out currently in many countries as a part of the implementation of Stockholm Convention revealed the need for detailed information about a distribution of pollutants in various regions. Screening for the residues of selected organochlorinated pesticides (chlordane, heptachlor, dieldrin, aldrin, endrin, isodrin, endosulfan I, endosulfan II, methoxychlor, mirex) in soil and biotic samples from the Czech Republic was performed. Although these pesticides have never been used in large quantities in this region, results indicate that their residues still persist in the top layer soils more than 20 years after they have been banned. The fact that their soil concentrations in the mountains are generally higher than those in agricultural areas, and detection of the traces of pesticides that have never been used in this region suggest on their occurrence in soils due to the atmospheric redistribution rather than as a result of direct application.

Agriculture↗

Alteration of steroidogenesis in H295R cells by organic sediment contaminants and relationships to other endocrine disrupting effects.

A novel bioassay with the human adrenocortical carcinoma cell line H295R can be used to screen for endocrine disrupting chemicals that affect the expression of genes important in steroidogenesis. This assay was employed to study the effects of organic contaminants associated with the freshwater pond sediments collected in the Ostrava-Karvina region, Czech Republic. The modulation of ten major genes involved in the synthesis of steroid hormones (CYP11A, CYP11B2, CYP17, CYP19, 17betaHSD1, 17betaHSD4, CYP21, 3betaHSD2, HMGR, StAR) after exposure of H295R cells to sediment extracts was investigated using quantitative real-time polymerase chain reaction (PCR). Crude sediment extracts, containing high concentrations of polycyclic aromatic hydrocarbons (PAHs) and moderate amounts of polychlorinated biphenyls (PCBs) and organochlorine pesticides (OCPs) significantly stimulated expression of the CYP11B2 gene (up to 10-fold induction), and suppressed expression of 3betaHSD2 and CYP21 genes. A similar pattern was observed with the extracts after treatment with concentrated sulfuric acid to remove labile chemicals (including PAHs) leaving only persistent PCBs, OCPs and potentially PCDD/Fs. Comparison of the results with other mechanistically based bioassays (arylhydrocarbon receptor, AhR, mediated responses in H4IIE-luc cells, and estrogen receptor mediated effects in MVLN cells) revealed significant endocrine disrupting potencies of organic contaminants present in the sediments (most likely antiestrogenicity). Pronounced effects were observed particularly in sediment extracts from the Pilnok Pond which harbors an unusual intersexual population of the narrow-cawed crayfish Pontastacus leptodactylus (Decapoda, Crustacea). This pilot study provided the first experimental evidence of the wider application of the H295R bioassay for screening complex environmental samples, and the results support the hypothesis of chemical-induced endocrine disruption in intersexual crayfish.

Cell Line, Tumor↗

Passive air sampling for persistent organic pollutants: introductory remarks to the special issue.

There have been a number of developments in the need, design and use of passive air samplers (PAS) for persistent organic pollutants (POPs). This article is the first in a Special Issue of the journal to review these developments and some of the data arising from them. We explain the need and benefit of developing PAS for POPs, the different approaches that can be used, and highlight future developments and needs.

Aerosols↗

Passive air sampler as a tool for long-term air pollution monitoring: Part 1. Performance assessment for seasonal and spatial variations.

The potential of passive air sampling devices (polyurethane foam disks) to assess the influence of local sources on the quality of the surrounding environment was investigated. DEZA Valasske Mezirici, a coal tar and mixed tar oils processing plant, and Spolana Neratovice, a chemical factory with the history of high production of organochlorinated pesticides (OCPs), were selected as the point sources of PAHs, and OCPs, respectively. Levels of PCBs, OCPs and PAHs were determined for all sampling sites and sampling periods. The study brought useful data about the air concentrations of POPs in the investigated regions. More important, it provided information on the transport and fate of POPs in the vicinity of local sources of contamination useful for the estimation of their influence. Very good capability of passive samplers to reflect temporal and spatial fluctuation in concentrations of persistent organic pollutants in the ambient air was confirmed which makes them applicable for monitoring on the local scale.

Air Pollutants↗

Passive air sampler as a tool for long-term air pollution monitoring: Part 2. Air genotoxic potency screening assessment.

The capability of passive air sampling to be employed in the evaluation of direct genotoxicity of ambient air samples was assessed. Genotoxic effects of the total extracts from the polyurethane foam filters exposed for 28 days during a regional passive air sampling campaign were investigated. Twenty sampling sites were selected in Brno city on the area of approximately 20x20 km in October and November 2004. Brno is the second largest city of the Czech Republic, highly industrialized with approximately 370,000 of permanent inhabitants. The levels of PAHs, PCBs, and chlorinated pesticides were determined in all samples. Fraction of each extract was also assayed in the bacterial genotoxicity test using Escherichia coli sulA::lacZ. Complete dose-response relationships of the air extracts were determined. The statistical analysis showed significant correlation between observed biological effects and PAHs concentrations in samples.

Air Pollutants↗

Screening of short- and medium-chain chlorinated paraffins in selected riverine sediments and sludge from the Czech Republic.

Wide distribution of chlorinated paraffins in the environment has already been demonstrated in several studies; however, information about their levels in the Central Europe is still very limited. First study focused on the SCCP contamination of the Czech aquatic environment have been performed recently, and its results motivated the authors to analyze sediments from a wide set of the Czech rivers in order to obtain more detailed information. Thirty-six sediment samples from eleven rivers and five drainage vents neighboring the chemical factories were analyzed; special attention was paid to the industrial areas. For the first time in the Czech Republic, medium-chain in addition to short-chain chlorinated paraffins were analyzed using GC-ECNI-MS. Chlorinated paraffins were detected in sediment samples on the concentration levels up to 347 ngg(-1) for short-chain chlorinated paraffins, and 5575 ngg(-1) for medium-chain chlorinated paraffins. Average chlorination degree of SCCPs was 65%.

Czech Republic↗

Activation of Ah receptor by pure humic acids.

Humic substances (HS) are ubiquitous in the environment. However, some studies indicate that HS could induce direct adverse effects on human health and hormone-like effects in fish, amphibians, and invertebrates. In this study we investigated a possible biochemical mechanism of HS toxicity via activation of the aryl hydrocarbon receptor (AhR). AhR mediates the toxic and biological effects of environmental contaminants such as 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), but a number of structurally diverse compounds has also been found to activate AhR. Alkali solutions of humic acids (HA) were prepared, and subsequently, lipophilic compounds (including parts of HA) were extracted by liquid-liquid extraction with hexane/dichloromethane. Organic extract of HA was further treated with sulfuric acid to study the role of possible trace persistent contaminants. In vitro dioxin-like activities of obtained extract and HA solutions have been evaluated using H4IIE.luc cells by determining the ethoxyresorufin-O-deethylase (EROD) activity and induction of AhR-dependent reporter luciferase. Traces of nonpersistent residues in HA with known AhR activity were identified and quantified by GC-MS. Our results show that an alkali solution as well as organic extract of HA were active in both EROD and luciferase assays, while H2SO4-treated extract activity was negligible. Only nonsignificant levels of AhR-inducing contaminants (PAHs and PCBs) were found in the HA samples. Our results indicate that HA or their fragments can elicit significant inductions of AhR-mediated effects in vitro. To our best knowledge, this study is the first in providing direct evidence of dioxin-like effects of HA. Further efforts should focus on detailed characterization of potential toxic effects of various HSs.

Animals↗

Toxicity and modulations of biomarkers in Xenopus laevis embryos exposed to polycyclic aromatic hydrocarbons and their N-heterocyclic derivatives.

Effects of a newly identified group of organic environmental pollutants of concern (N-heterocyclic derivatives of polycyclic aromatic hydrocarbons, NPAHs) were investigated using the 96 h FETAX (Frog Embryo Teratogenesis Assay - Xenopus). Beside standard FETAX parameters (mortality, malformations), changes in several biochemical markers were studied as early signs of intoxication. Biomarkers included determination of glutathione (GSH) levels and lipid peroxidation as well as activities of important detoxification and antioxidant enzymes (glutathione-S-transferase, glutathione peroxidase, glutathione reductase). 1,10-Phenathroline was the most toxic of all tested compounds (96 h LC(50) = 4 microM). All tested NPAHs induced malformations in the frog embryos. The data suggest that the exposure to NPAHs can induce oxidative stress in amphibians; most biochemical markers were modulated at concentrations lower than those resulting in significant mortality. Results document mortality and teratogenicity of all studied NPAHs to amphibian embryos while no significant mortality, teratogenicity or modulations in biochemical markers could be observed with unsubstituted polycyclic aromatic hydrocarbons (PAHs) at concentrations up to their water solubility. This information along with the significantly greater solubility and thus bioavailability compared to their nonsubstituted parent compounds suggests that NPAHs could contribute significantly to the overall aquatic toxicity of mixtures of PAHs and their derivatives.

Abnormalities, Drug-Induced↗

Experimental studies of environmental processes: A practical course in environmental chemistry.

BACKGROUND, AIM AND SCOPE: To predict the fate of persistent organic pollutants in the environment, several aspects have to be considered carefully: their basic physical and chemical properties, distribution, transport within and among compartments, biotic and abiotic transformation processes, as well as effects on living organisms including humans. Laboratory simulation of the processes that control the chemical behavior of organic compounds in the environment is often desirable for deeper understanding, as well as for determination of basic characteristics required for successful environmental modeling. However, laboratory exercises targeted on the simulations of environmental processes are very rare. MATERIALS AND METHODS: Practical training was designed as a supplement to the course of Environmental Chemistry. The whole course consists of seven experiments in a logical sequence-partition coefficient (n-octanol-water), Henry's Law Constant, soil sorption, volatilization from soil, bioaccumulation, photochemical degradation and microbial degradation. The objective is to gain knowledge of the principal physical processes, by which chemicals move, concentrate and dissipate, as well as of the principal routes of biotic and abiotic degradation. RESULTS: New practical course reflecting current topics and approaches of environmental chemistry was introduced to M.S. students at Masaryk University in 2004. Detailed description of the course including experimental techniques is provided in this article. DISCUSSION: Lab course employs basic techniques for the study of environmental processes to strengthen links between the theory taught in the lectures of Environmental Chemistry, laboratory simulations, and processes in the real word. CONCLUSIONS: A significant effort towards developing this laboratory exercise was devoted with the goal of providing a context for teaching both fundamental theories and environmental techniques, strengthening the link between the theory and processes in the real world, providing a scientific background for understanding the environmental problems, challenging the students with the experience of simulating the physical, chemical, and biological processes that control contaminant fate and transport in the environment, showing the students importance of the interdisciplinary approach and giving the students a taste of the excitement and challenge of the research in real conditions. RECOMMENDATIONS AND PERSPECTIVES: The laboratory course was taught with a great success, and it became a part of recommended study plans for M.S. students in Environmental Chemistry and Ecotoxicology. Suggested experiments proved to be suitable for simulation of biotic and abiotic transformations, bioaccumulation, as well as distribution and transport processes in a student laboratory with good reproducibility and accuracy. The response of the students was very positive.

Curriculum↗

Cytotoxicity and aryl hydrocarbon receptor-mediated activity of n-heterocyclic polycyclic aromatic hydrocarbons: structure-activity relationships.

Toxic effects of many persistent organic pollutants (e.g., polychlorinated biphenyls or polychlorinated dibenzo-p-dioxins and furans) are mediated via the aryl hydrocarbon receptor (AhR). Although polycyclic aromatic hydrocarbons (PAHs) and their derivatives also activate AhR, their toxic effects remain to be fully elucidated. In the present study, we used the in vitro H4IIE-luc transactivation cell assay to investigate cytotoxicity and potencies to activate AhR by 29 individual PAHs and their N-heterocyclic derivatives (aza-PAHs). The aza-PAHs were found to be significantly more cytotoxic and more potent inducers of AhR than their unsubstituted analogues. Several aza-PAHs, such as dibenz[a,h]acridine or dibenz[a,i]acridine, activated AhR within picomolar concentrations, comparable to the effects of reference 2,3,7,8-tetrachlorodibenzo-p-dioxin. Ellipsoidal volume, molar refractivity, and molecular size were the most important descriptors derived from the modeling of quantitative structure-activity relationships for potencies to activate AhR. Comparable relative toxic potencies (induction equivalency factors) for individual aza-PAHs are derived, and their use for evaluation of complex contaminated samples is discussed.

Animals↗

Using nematodes in soil ecotoxicology.

Nematodes represent a very abundant group of soil organisms and non-parasitic species are important for soil quality and in the soil food web. In recent years, it has been shown that nematodes are appropriate bioindicators of soil condition and they are also suitable organisms for laboratory toxicity testing. The aims of this paper are to overview and critically assess methods and approaches for researching soil nematode ecotoxicology. In natural ecosystems, nematode abundance and community structure analyses were proved to be sensitive indicators of stress caused by soil pollutants and ecological disturbance. Community structure analyses may be approached from a functional or ecological point of view; species are divided into groups according to their feeding habits or alternatively the maturity index is calculated according to their ecological strategy. Many environmental factors have the potential to affect nematode community, which consequently results in high space and time variability. This variance is major handicap in field ecotoxicological studies because pollutant-nematode relationships are obscured. For prospective risk assessment of chemicals, several toxicity tests with nematodes were developed and are increasingly used. Sensitivity of these tests is comparable to tests with other soil species (e.g. enchytraeids, earthworms and springtails) while tests are less demanding to space and time. Most studies have focused on metal toxicity but organic compounds are almost overlooked. Endpoints used in tests were often mortality, reproduction or movement, but more sublethal endpoints such as feeding or biomarkers have been used recently too. Although there is an increasing amount of knowledge in soil nematode ecotoxicology, there is still a lot of various issues in this topic to research.

Animals↗

Contribution of biomass burning to atmospheric polycyclic aromatic hydrocarbons at three European background sites.

Radiocarbon analysis of atmospheric polycyclic aromatic hydrocarbons (PAHs) from three background areas in Sweden, Croatia, and Greece was performed to apportion their origin between fossil and biomass combustion. Diagnostic ratios of PAHs implied that wood and coal combustion was relatively more important in the northern European site, while combustion of fossil fuels was the dominant source of PAHs to the two central-southern European background sites. The radiocarbon content (delta14C) of atmospheric PAHs in Sweden ranged between -388 per thousand and -381 per thousand, while more depleted values were observed for Greece (-914 per thousand) and Croatia (-888 per thousand). Using a 14C isotopic mass balance model it was calculated that biomass burning contributes nearly 10% of the total PAH burden in the studied southern European atmosphere with fossil fuel combustion making up the 90% balance. In contrast, biomass burning contributes about 50% of total PAHs in the atmosphere at the Swedish site. Our results suggest that the relative contributions of biomass burning and fossil fuels to atmospheric PAHs may differ considerably between countries, and therefore, different national control strategies might be needed if a further reduction of these pollutants is to be achieved on a continental-global scale.

Air Pollutants↗

Genotoxic activity of a technical toxaphene mixture and its photodegradation products in SOS genotoxicity tests.

Toxaphene (CAS No. 800-35-2) is a complex mixture of several hundred components that was used worldwide primarily as an agricultural pesticide with insecticide effects in the second half of the 20th century. In vitro investigations of the genotoxicity and mutagenicity of toxaphene were generally described in the literature, but they provided somewhat equivocal results. We re-evaluated the genotoxicity of technical toxaphene in two prokaryotic systems. The SOS Chromotest showed high sensitivity to toxaphene: three concentrations (40, 20 and 10 mg/l) were clearly positive and the dose-response effect was evident. In the umuC assay, a dose-dependent increase in genotoxic activity was observed at toxaphene concentrations from 2.5 to 40.0 mg/l, but these results were found to be not significant. The genotoxicity of toxaphene and its photodegradation products after UV-irradiation (3-6-9 h) at concentrations ranging from 7.5 to 60.0 mg/l was also examined in this study. An irradiated solution of technical toxaphene after 3 h showed no significant evidence of bacterial growth inhibition. However, exposure of Salmonella to 6 h UV-irradiated toxaphene showed a toxic effect compared with the negative control. After 9 h irradiation, a decrease of bacterial growth was observed. Activity of beta-galactosidase in the presence of a toxaphene solution was significantly increased after 6 and 9 h irradiation, reaching values that were 2.4- and 3.1-fold higher, respectively, than the control, which exceeded the criteria of significant genotoxicity. These results show that while technical toxaphene is a weak, direct-acting mutagen in some bacterial tests, a dose-dependent toxicity and genotoxicity of its photoproducts could be conclusively demonstrated by the umuC test.

Animals↗

Analysis of short chain chlorinated paraffins in sediment samples from the Czech Republic by short-column GC/ECNI-MS.

Top layer sediment samples from the Czech Republic were analyzed to obtain the preliminary information about contamination of the region by chlorinated paraffins. Sediment samples from three locations with different industrial discharges were taken over the period of 2 years. The analysis was performed by short-column gas chromatography-electron capture negative ion mass spectrometry (SCGC/ECNI-MS). Short chain chlorinated paraffin sediment concentrations varied between 24.00 and 45.78 ng g(-1) (dry weight, d.w.) in the Kosetice area, 16.30-180.75 ng g(-1) (dry weight) in the Zlín area and 4.58-21.57 ng g(-1) dry weight in the Beroun area. Highly chlorinated undecanes prevailed in the samples. On the basis of these results, more detailed studies should be conducted to determine the magnitude and extent of chlorinated paraffin contamination in these regions.

Czech Republic↗

Photodegradation of organic pollutants on the spruce needle wax surface under laboratory conditions.

The photochemistry of selected organic compounds, including common pollutants, on the paraffin (as a model matrix) and spruce wax surfaces was studied under laboratory conditions. Two model transformations were evaluated: (1) intramolecular rearrangements of valerophenone and 2-nitrobenzaldehyde, and (2) hydrogen abstraction between an excited benzophenone and the hydrocarbon paraffin/wax chains. The steric or polar influence of the solid matrix on conformational and translational motion, its optical properties, hydrogen abstraction probabilities, and consequences of the guest-molecule segregation are discussed in this work. Furthermore, the photochemical reactivity of some common anthropogenic pollutants, such as chlorinated biphenyls (4-chlorobiphenyl, 2,4-dichlorobiphenyl, and 4,4'-dichlorobiphenyl), 4-chlorophenol, and DDT, was evaluated. The surface of spruce wax is presented as probable reaction medium for photochemical transformations. Although the matrix presents certain restrictions for bimolecular reactions, common photodegradations should be generally feasible in nature. In addition, paraffin was found to be a suitable model matrix for the studies of possible photochemical transformations that can occur on natural plant surfaces.

Air Pollutants↗

Monitoring microbial biomass and respiration in different soils from the Czech Republic--a summary of results.

The microbial biomass (Cbio), respiration (basal respiration (BR) and potential respiration (PR)), and derived indices for 520 independent soil samples of 117 different soils from the Czech Republic were statistically analysed. The broad range of soil samples allowed the stepwise breakdown of the database into six reasonable categories of soil: arable soils, loamy grassland soils, sandy grassland soils with weak organic matter content, sandy grassland soils with moderate organic matter content, forest soils with moderate organic matter content, and forest organic soils with rich organic matter content. Because soil microbiology lacks benchmarking values, the ranges of the microbial characteristics for these categories were stated and are presented here. The separation into soil groups narrowed the ranges enough to be useful for comparative purposes. The groups displayed significant differences in basal microbial parameters. The lowest microbial biomass was found in arable soils and grassland sandy soils with weak organic matter content. The highest microbial biomass was shown by loamy grassland soils and organic forest soils. Respiration displayed similar results to the microbial biomass. The derived indices revealed less significant differences confirming their inner-standard nature. The relationships between the soil contamination and microbial parameters were not explored because of the confounding effect of soil organic matter. However, it was not shown by the category of grassland sandy soils with weak organic matter content suggesting they could be especially suitable for the biomonitoring of harmful effects of chemicals on soil microorganisms.

Biomass↗