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Biomedical subjects

J Allan

Publications and source records attributed to J Allan.

At least 19 recordsLinked to original sources
PubMed1992

Site-directed mutagenesis studies on the binding of the globular domain of linker histone H5 to the nucleosome.

The globular domain of the linker histone H5 has been expressed in Escherichia coli. The purified peptide is functional as it permits chromatosome protection during micrococcal nuclease digestion of chromatin reconstituted with the peptide, indicating that it binds correctly at the dyad axis of the nucleosomal core particle. The globular domain residue lysine 64 is highly conserved within the linker histone family, and site-directed mutagenesis has been used to assess the importance of this residue in the binding of the globular domain of linker histone H5 to the nucleosome. Recombinant peptides mutated at lysine 64 are unable to elicit chromatosome protection to the same degree as the wild-type peptide, and since they appear to be fully folded, these observations confirm a major role for this residue in determining the effective interaction between the globular domain of histone H5 and the nucleosome.

Amino Acid Sequence↗
PubMed1992

Salivary and serum antibodies in experimental canine taeniasis.

Specific IgG and IgA antibodies against adult Taenia pisiformis excretory/secretory antigen were detected in sera and saliva by enzyme-linked immunosorbent assay (ELISA) in experimentally infected dogs. IgG titres in serum and IgA in saliva corresponded with infection status, while serum IgA levels closely reflected faecal egg counts. The salivary IgA response was particularly raised and could have significant immunodiagnostic use for taeniasis in dogs.

Animals↗
PubMed1991

Unusual pattern of antibodies to human T-cell leukemia virus type-I in family members of adult T-cell leukemia patients.

Detection methods for the human T-cell leukemia virus type-I (HTLV-I) for blood screening and diagnosis generally rely on antibody tests that use the structural proteins of HTLV-I as antigen. We have found an unusual pattern of antibody reactivity among people who are at high risk of HTLV infection due to being a family member of an adult T-cell leukemia (ATL) patient: a specific antibody reaction exclusively directed to the HTLV regulatory protein tax, and not to the HTLV-I structural proteins. Sera from 7 of 82 (8.5%) structural antibody-undetectable family members of ATL patients had the anti-tax reactivity. Two seroconverters were observed. One seroconverter a healthy resident of Miyazaki, tested negative for structural antibody, but positive for tax antibody. Two years later she tested positive for both. The other seroconverter, an Israeli hemophiliac, tested negative for both antibodies, but converted to tax antibody-positive/structural antibody-negative. The HTLV-I tax-only antibody profile was also observed in sera sets from two other populations at risk for HTLV infection, human immunodeficiency virus-1-infected patients at the Bronx-Lebanon Hospital in New York and Israeli hemophiliacs. DNA samples from lymphocytes of four individuals with antibody reactivity only to HTLV-I tax were tested in polymerase chain reaction experiments; no HTLV-I or -II DNA was detected.

Animals↗
PubMed1991

The promoter and enhancer of the inactive chicken beta-globin gene contains precisely positioned nucleosomes.

Core histone octamers reconstituted in vitro onto DNA fragments containing the chicken beta-globin gene promoter are precisely positioned with respect to the underlying DNA sequence [1]. Here we show that this is also true of the chicken beta-globin gene enhancer. These nucleosome binding sites are also employed within transfected COS cell nuclei, where the chicken beta-globin gene is transcriptionally inactive. Similar results were found in vivo, where positioned nucleosomes were detected over the inactive beta-globin promoter in chicken brain cells and 5-day red blood cells, and over the inactive beta-globin enhancer in brain cells. In contrast, the promoter and enhancer regions were found to be nucleosome-free in 15-day erythrocytes where the beta-globin gene is active. We argue that these results suggest a role for positioned nucleosomes in the regulation of the transcription of the chicken beta-globin gene.

Animals↗
PubMed1991

A chicken red cell inhibitor of transcription associated with the terminally differentiated state.

When a red cell nuclear extract (RCE) from adult chickens was injected into Xenopus oocytes along with the chicken beta globin gene, transcript levels were dramatically reduced compared to injection of DNA alone. The inhibitory action of the RCE was not specific to the beta globin gene since the Herpes thymidine kinase and Xenopus 5S RNA gene transcript levels were similarly reduced. Transcriptional repression was observed even after passage of the RCE through oocyte cytoplasm to the nucleus. The inhibitory activity binds to DNA cellulose, which suggests that the inhibitor either binds to DNA or associates with DNA-binding proteins. Nuclease digestion of the chromatin assembled on injected beta globin DNA revealed that inhibition was not associated with local changes in chromatin structure. Extracts from 9-d chicken embryonic erythroid cells, in which the endogenous beta globin gene is actively expressed, did not inhibit transcription. The inhibitory activity is, therefore, restricted to transcriptionally quiescent, adult erythrocytes. Since the inhibitory effects were seen with both polymerase II and III directed genes, we speculate that the activity may be part of the extreme transcriptional repression which occurs in the terminally differentiated erythrocyte.

Animals↗
PubMed1991

Evaluation of three strategies for fitting hearing aids binaurally.

Three strategies for evaluating optimum frequency shaping and noise reduction in binaural digital hearing aids were compared in a repeated-measures design, using a new preference-based prescriptive fitting method. These strategies consisted of using preferred frequency shaping and noise reduction values binaurally: (1) based on monaural testing; (2) based on separate evaluations of each ear; and (3) based on evaluation of a second ear while subjects wore an aid programmed with the preferred values in the first ear. Individually preferred characteristics were programmed for 17 hearing-impaired subjects, most of whom exhibited symmetrical sensorineural hearing loss. Each subject was administered intelligibility estimation and midplane localization measurements in the laboratory, as well as a questionnaire survey based on situational listening in the real world. No statistically significant differences in preferences for either frequency shaping or noise reduction were found for the three fitting strategies, suggesting that monaural testing is sufficient in symmetrical cases to provide information for binaural fitting. Related to this finding, differences across binaural conditions were minimal for both intelligibility estimation and localization results. A significant improvement in localization performance under binaural conditions over monaural listening, however, was documented by both the laboratory and the real world data. A strong overall preference for binaural over monaural amplification was also documented under real world conditions.

Adult↗
PubMed1990

Effects of lovastatin in diabetic patients treated with chlorpropamide.

Patients with non-insulin dependent diabetes mellitus (NIDDM) have a higher risk of atherosclerotic cardiovascular disease than nondiabetic subjects. In seven patients with both hypercholesterolemia and NIDDM controlled by chlorpropamide, lovastatin (20 mg b.i.d. for 6 weeks) lowered low-density lipoprotein cholesterol by 28%, total cholesterol by 24%, and apolipoprotein B by 24%. Lovastatin levels for a 4-hour period (measured as 3-hydroxy-3-methylglutaryl coenzyme A reductase inhibitory activity) were similar to those measured previously in nondiabetic patients. Lovastatin did not alter chlorpropamide kinetics or glycemic profiles. No patient had an elevation in serum transaminases or creatinine phosphokinase, and no patient had any other laboratory or clinical drug-related adverse experience during the study. Lovastatin was as effective in reducing low-density lipoprotein cholesterol in patients with NIDDM as in nondiabetic subjects. Diabetic control was unaltered, and no evidence of alteration in lovastatin or chlorpropamide blood levels was noted.

Acyl Coenzyme A↗
PubMed1990

Signal averaging in real ear probe tube measurements.

In this study, signal averaging measurements were performed using a broadband noise as the test signal in two acoustic environments typifying relatively noisy situations in which real ear probe tube measurements are made clinically. The minimum time-domain signal averaging required to reduce the degrading effects of background noise to levels acceptable for the production of valid real ear unaided responses (REURs) was established for three normal listeners at various signal-to-noise (S/N) ratios. Generally, averaging was not required at S/Ns of 20 dB or higher. Acceptable responses were obtained at S/Ns as low as -5 dB when the number of averages was increased to 256 and higher. The function derived from the data in the two acoustic environments was in good agreement with a theoretical rule. Findings suggest that averaging of only a few sweeps of the test signal is required to obtain reliable and valid real ear measurements, even in somewhat noisy test environments. With a knowledge of the levels of the test signal and the background noise, data from this study can be used to determine the requisite number of signal sweeps to be averaged in acquiring real ear responses in a minimum amount of time.

Acoustics↗
PubMed1990

Simian immunodeficiency viruses from African green monkeys display unusual genetic diversity.

African green monkeys are asymptomatic carriers of simian immunodeficiency viruses (SIV), commonly called SIVagm. As many as 50% of African green monkeys in the wild may be SIV seropositive. This high seroprevalence rate and the potential for genetic variation of lentiviruses suggested to us that African green monkeys may harbor widely differing genotypes of SIVagm. To investigate this hypothesis, we determined the entire nucleotide sequence of an infectious proviral molecular clone of SIVagm (155-4) and partial sequences (long terminal repeat and Gag) of three other distinct SIVagm isolates (90, gri-1, and ver-1). Comparisons among the SIVagm isolates revealed extreme diversity at the nucleotide and amino acid levels. Long terminal repeat nucleotide sequences varied up to 35% and Gag protein sequences varied up to 30%. The variability among SIVagm isolates exceeded the variability among any other group of primate lentiviruses. Our data suggest that SIVagm has been in the African green monkey population for a long time and may be the oldest primate lentivirus group in existence.

Amino Acids↗
PubMed1990

Serological survey for two simian retroviruses in macaques and African green monkeys.

Colonies of nonhuman primates at the Bowman Gray School of Medicine (BGSM) were tested for antibodies to two retroviruses associated with immunodeficiency by indirect immunofluorescence (IFA) and western blot. A total of 471 cynomolgus macaques (Macaca fascicularis), 144 rhesus monkeys (M. mulatta) and 67 stumptail monkey M. arctoides) were tested for SRV-1, and 152 African green monkeys (Cercopithecus aethiops) were tested for SIV. Of the macaques tested, 170 (36%) cynomolgus, 5 (3%) rhesus and 8 (12%) stumptails were positive for SRV-1 antibodies by IFA. Of the African green monkeys, 54 (36%) were IFA positive for SIV antibodies. A total of 143 African green monkeys tested by IFA also were tested by western blot. In the African green monkeys, the IFA had a positive predictive value of 98% and a negative predictive value of 96%. Of 176 IFA positive macaque sera tested by western blot, 49 (28%) were positive, 55 (31%) were considered equivocal (only one band, usually to p27 core protein), and 72 (41%) were negative.

Animals↗
PubMed1990

Molecular characterization of simian lentiviruses from east African green monkeys.

Asymptomatic infection with simian lentiviruses (also called simian immunodeficiency viruses, or SIV) is common among feral African green monkeys. To characterize the range of SIV genetic diversity among infected African green monkeys, we have determined nucleotide sequences from complete or partial molecular clones of four distinct SIVagm isolates from Kenya and Ethiopia. The nucleotide and amino acid variability we observed among the SIVagm isolates was greater than the variability within any other group of primate lentiviruses. These data suggest that: a) African green monkeys have been infected with simian lentiviruses for many years; and b) novel and uncharacterized primate lentiviruses may exist in the feral African green monkey population in other parts of Africa.

Amino Acid Sequence↗
PubMed1989

The need for a more holistic health care system.

As a result of the evolution of health problems in the United States, the current health care system must change its focus from the traditional biomedical model to a holistic health oriented model. The holistic health oriented system is based on the enhancement and maintenance of health, not on the cure of disease. Given positive research findings concerning the health and cost benefits of worksite health promotion programs, it appears that industry, along with third party payers, nurses, and other health care professionals, could alter the emphasis and direction of health care. The worksite provides an ideal setting for the development of holistic programs. The occupational health nurse, whose role involves health promotion, health protection, environmental screening, and illness intervention, is in the best position to work with management in developing health promotion programs.

Delivery of Health Care↗
PubMed1988

5' structural motifs and Xenopus beta globin gene activation.

We have analysed the structure of the Xenopus beta globin gene 5' flanking region in erythroid and non-erythroid chromatin, in supercoiled plasmids and in minichromosomes assembled in HeLa cell transfections. We have identified two erythroid chromatin-specific, nuclease-hypersensitive sites (HSs), one centred on the cap site, the other located 1000 base-pairs further upstream. An (AT)n tract is located 200 base-pairs upstream from each of these sites. In supercoiled plasmids, the (AT)n tracts, and not the chromatin HSs, are preferentially cleaved by single strand and double strand-specific nucleases. Using restriction enzymes, we have looked at the structure of the cap site HS in minichromosomes assembled in HeLa cell transfections. We find that the structure is indistinguishable from that found in erythroid chromatin, thus reinforcing our previous suggestion, based only on DNase I studies, that the formation of this HS is not dependent on erythroid-specific factors. In view of this close structural mimicry of the situation in vivo, we have used the HeLa cell model system to study the sequences required for cap site HS formation. We find that deletion of the (AT)n tract immediately upstream influenced neither the formation of the HS nor transcription of the globin gene. Indeed, these features remained unaffected by further deletion of upstream sequences, including 50 base-pairs of the HS itself. In this construct, the dimensions of the HS remained the same as in the undeleted construct, with the plasmid sequences that replaced the deleted Xenopus sequences becoming hypersensitive. Thus, HS formation is directed by sequences downstream from --116 acting over a distance of at least 50 base-pairs.

Animals↗
PubMed1988

Precise nucleosome positioning in the promoter of the chicken beta A globin gene.

Histone octamers were reconstituted onto 5' end-labelled DNA fragments derived from the promoter region of the chicken beta A globin gene. The location of the reconstituted histone octamer with respect to the DNA sequence of each fragment was assessed by Exonuclease III digestion of purified nucleosome monomers. By this approach we have found a strong preference for histone octamers to be positioned over nucleotides -206 to -62 relative to the gene cap site. This stretch of DNA contains all those 5' beta globin sequences which, by DNase footprinting, bind specific protein factors and incorporates three promoter consensus sequence motifs. The upstream terminal 32 base pairs of this DNA segment contains the binding sites for the erythrocyte specific G-string binding protein and transcription factor Spl and appears to be relatively weakly bound to the histone octamer.

Animals↗
PubMed1988

Locating the folded domain of H5 histone in chicken erythrocyte higher-order fiber.

The capacity of native chicken erythrocyte chromatin to bind antibodies specific for the folded domain of histone H5 (GH5) was investigated by radioimmunoassay and electron microscopy. We measured the accessibility of GH5 to antibodies as chromatin folds from an extended (10-nm) polynucleosome chain into (30-nm) higher-order fibers, as the solvent salt concentration was increased. Half of the available antibody population reacted with unfolded chromatin. In folded fibers, exposure of antigenic determinants was dependent on prior cross-linking treatment. In the absence of such modification, antigenic sites remained fully exposed in native chromatin. However, after fixation the same material presented a substantial and progressive decrease in antibody binding as the salt concentration was raised. These results indicate an inaccessible location for the folded domain of H5 in chromatin higher-order fiber, and are discussed in this context.

Animals↗