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J Cullum

Publications and source records attributed to J Cullum.

At least 37 records · Page 2Linked to original sources

Stabilization of Streptomyces lividans by homologous recombinational insertion.

We have developed a system for the introduction and maintenance of novel tandem repeats in the chromosome of Streptomyces lividans 66. This was achieved by introducing, via transformation, Escherichia coli "suicide" vectors carrying manipulated S. lividans DNA fragments. Selection for antibiotic resistance markers carried on such plasmids permitted the isolation and maintenance of mutant strains containing novel tandem repeats formed by the integration into the chromosome of the plasmids, via homologous recombination between plasmid-borne chromosomal sequences and identical sequences on the chromosome. When novel repeats were introduced, and maintained, in regions of the chromosome which become deleted in unstable strains of S. lividans, those deletion events were blocked. Surprisingly, such strains were also 10 to 20-fold more stable than the parent even in the absence of selection. In stable regions of the chromosome, the maintenance of novel repeats had no obvious effect on the deletion events. This strategy could be generally applicable to industrial strains of Streptomyces, where instability is a common problem.

Chromosome Deletion↗

Spontaneous mutations in the galactose operons of Streptomyces coelicolor A3 (2) and Streptomyces lividans 66.

Mutations can be divided into two classes: point mutations (base changes, frame shifts) and DNA rearrangements (deletions, insertions, inversions etc.). In Escherichia coli K 12, DNA insertions account for up to 40% of spontaneous mutations that inactivate genes (for review, see CULLUM 1985) and the Insertion Sequences involved can also mediate deletions and inversions. We started to study spontaneous mutations in Streptomyces in the expectation of isolating transposable elements and chose the galactose genes as convenient system. When selection is made for resistance to the galactose analogue 2-deoxygalactose (2dgalR), gal K mutants are obtained that are defective in the enzyme galactokinase (Kendall et al. 1987). We isolated spontaneous 2dgalR mutations in the closely related strain S. coelicolor A 3 (2) and S. lividans 66 and cloned the gal K gene of the former strain. Adams et al. (1988) have cloned and sequenced the gal genes of S. lividans 66 and shown that they form an operon, the restriction map appears to be identical to that of S. coelicolor A 3 (2). In this paper we describe the characterisation of spontaneous 2 dgalR mutants in S. coelicolor A 3 (2) and S. lividans 66.

Chromosome Deletion↗

Genetic instability in streptomycetes.

Genetic instability is very common in Streptomyces species and is usually due to large chromosomal deletions. In the case of Streptomyces lividans 66, instability can be separated into two steps, each of which involves deletion of over 200 kb of DNA. Extreme DNA amplification often accompanies deletion and in S. lividans 66 this property has been used to amplify cloned genes to obtain stable high-copy-number derivatives.

Chromosome Deletion↗

A plausible mechanism for large-scale chromosomal DNA amplification in streptomycetes.

Recent advances in our understanding of the structure of highly amplified DNA sequences in Streptomyces fradiae and lividans have enabled us to formulate a possible mechanism by which amplification may occur. An essential feature of the model is the generation of an amplification precursor, which comprises a circularised copy of the DNA to be amplified, attached to one arm of the chromosome by a replication fork. Multiple copies of the amplifiable DNA are generated by rolling circle replication. The model adequately accounts for many features of gene amplification in these two species, including the tendency for deletions to occur to one side, but not the other, of the amplified DNA.

Chromosomes, Bacterial↗

DNA rearrangements associated with instability of an arginine gene in Streptomyces coelicolor A3(2).

Streptomyces coelicolor A3(2) gives rise to spontaneous chloramphenicol sensitive mutants at a frequency of about 0.3% per spore. These mutants are often genetically unstable and give rise to arginine auxotrophs (Arg-) at frequencies of 1-7% per spore. These Arg- mutants usually lack the enzyme argininosuccinate synthetase (one exception was found that lacked ornithine carbamoyltransferase) and were shown to have deleted the corresponding argG gene by hybridisation analysis using a cloned S. cattleya argG gene. The Arg- strains also showed a variety of different DNA amplification and deletion events in a region homologous to an amplified DNA sequence found in spontaneous Arg- mutants in S. lividans 66.

Arginine↗

DNA deletions in spontaneous chloramphenicol-sensitive mutants of Streptomyces coelicolor A 3(2) and Streptomyces lividans 66.

A mutant of Streptomyces coelicolor A 3(2) highly resistant to chloramphenicol was selected. It had amplified some chromosomal DNA fragments to a copy number of 20-50. Some of the amplified fragments were cloned and used as hybridisation probes to investigate the spontaneous chloramphenicol-sensitive mutants which occur at high frequency in this species and the closely related species Streptomyces lividans 66. These investigations demonstrated that chloramphenicol sensitivity in both species is associated with large deletions that are at least 40 kb in length.

Chloramphenicol↗

Cloning of the galactokinase gene (galK) from Streptomyces coelicolor A3(2).

Streptomyces coelicolor A3(2) and Streptomyces lividans 66 strains were shown to be sensitive to the galactose analogue 2-deoxy-D-galactose. Spontaneous resistant mutants were isolated that were Gal- and lacked the enzyme galactokinase. The galK gene (structural gene for galactokinase) from S. coelicolor was cloned into S. lividans using the low copy number vector pIJ922. The resulting plasmid (pMT650), which contained a 14 kb insert, complemented gal mutations in both species. The presence of the galK gene on a 2.8 kb EcoRI fragment was confirmed by expressing it in Escherichia coli where it complemented a well characterized galK mutation.

Cloning, Molecular↗

Identification of a DNA sequence associated with plasmid integration in Streptomyces coelicolor A3(2).

We identified a DNA element of length about 1 kb that is present in two copies in the chromosome of Streptomyces coelicolor A3(2) and is also present on the plasmid SCP1 which has been carefully defined genetically, but never isolated as extrachromosomal DNA. A copy of the element is close (within 5 kb) of a gene coding for an extracellular agarase in the chromosome of S. coelicolor A3(2) and in an NF strain, in which SCP1 has integrated into the chromosome, the agarase gene has been deleted. The element has properties reminiscent of Insertion Sequences in Escherichia coli, but it is not yet know if it can transpose.

DNA Restriction Enzymes↗

DNA amplification and genetic instability in Streptomyces.

Genetic instability is very common in Streptomyces species, but only affects specific genes in any one strain. It sometimes occurs at high frequency spontaneously, but may be stimulated by treatments such as UV irradiation or intercalating agents. Deletion of genes occurs and may be accompanied by DNA amplifications. It is unlikely that there is plasmid involvement in most cases. Little is yet known about the molecular mechanisms of deletion and DNA amplification. Genetic instability can be a problem during commercial antibiotic production. DNA amplification of cloned genes is potentially useful for achieving both stability and high gene dosage.

Anti-Bacterial Agents↗

Structure of an amplifiable DNA sequence in Streptomyces lividans 66.

Spontaneous chloramphenicol-sensitive mutants of Streptomyces lividans 66 had previously been shown to be very unstable and to yield arginine auxotrophic mutants at a frequency of 25% of spores; the Arg- mutants had amplified a particular 5.7 kb DNA sequence to over one hundred tandem copies per genome. In this paper we report the cloning of the amplifiable region from amplified and wild-type strains. This showed that the amplifiable fragment is already present as a duplication in wild type cells. Hybridisation experiments also demonstrated that in the amplified strains there was a deletion of neighbouring DNA sequences to one side of the amplifiable element; sequences to the other side remain intact.

DNA Restriction Enzymes↗

Temperature-sensitive mutants of the Streptomyces plasmid pIJ702.

DNA from the Streptomyces plasmid pIJ702 was mutagenized in vitro using hydroxylamine and transformed into Streptomyces lividans. One plasmid with temperature-sensitive replication (pMT660) and one plasmid with a temperature-sensitive tyrosinase (pMT661) were isolated. The plasmid pMT661 contains a novel PstI restriction endonuclease site within the tyrosinase gene.

DNA Restriction Enzymes↗

DNA amplification and an unstable arginine gene in Streptomyces lividans 66.

Streptomyces lividans 66 produced spontaneous chloramphenicol-sensitive mutants (CmlS) at a frequency of about 1% of spores. The CmlS mutant strains were very unstable, giving Arg- mutants at frequencies of about 25% of spores. All the Arg- mutants had amplified a particular 5.75 kb DNA fragment into tandem repeats of 250-500 copies per chromosome.

Anti-Bacterial Agents↗

Cloning and expression of an extracellular-agarase from Streptomyces coelicolor A3(2) in Streptomyces lividans 66.

An extracellular agarase gene was cloned from Streptomyces coelicolor A3(2) strain M130 into S. lividans 66 using the multicopy plasmid vector pIJ702. Various deletion derivatives of the initial clone (pMT605) were obtained by in vitro and in vivo methods. This allowed the gene to be localised to a 1.9-kb segment of DNA. The agarase enzyme was overproduced (up to 500 times) and exported efficiently into the medium. The agarase protein was identified as a 28-kDal band after sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE); in the case of one derivative, pMT608, this band accounted for nearly 50% of the total extracellular protein. Differences in agarase production between the deletion derivatives correlated well with plasmid stability.

Chromosome Mapping↗

Integration of IS3 into IS2 generates a short sequence duplication.

The Gal+ allele IS2-43 is known to segregate Gal- clones. Among 11 Gal- segregants, one was shown to be due to the integration of IS3 into IS2-43. Precise excision of the integrated IS3 element occurred at a rate of 5 x 10(-9)/cell/generation. DNA sequence analysis revealed that the termini of the IS3 element have the relation of imperfect inverted repeats and it is now flanked by a 3bp or 4bp duplication, a size which has not been seen before with other elements.

Alleles↗

IS2-43 and IS2-44: new alleles of the insertion sequence IS2 which have promoter activity.

The sequence of two new IS2 alleles with promoter activity (IS2-43 and IS2-44) is reported. The alleles are identical and are formed by a 17 bp tandem duplication in an AT-rich region of IS2. This created a new RNA polymerase binding site. A mutation was found that increased the frequency of formation of these 17 bp duplications but not of another class of duplications, the "mini-insertions". This suggested that the mechanisms of formation of the two classes of duplications are different.

Alleles↗