Biomedical subjects

J D van Beek

Publications and source records attributed to J D van Beek.

5 recordsLinked to original sources

PubMed2002

The molecular structure of spider dragline silk: folding and orientation of the protein backbone.

The design principles of spider dragline silk, nature's high-performance fiber, are still largely unknown, in particular for the noncrystalline glycine-rich domains, which form the bulk of the material. Here we apply two-dimensional solid-state NMR to determine the distribution of the backbone torsion angles (phi,psi) as well as the orientation of the polypeptide backbone toward the fiber at both the glycine and alanine residues. Instead of an "amorphous matrix," suggested earlier for the glycine-rich domains, these new data indicate that all domains in dragline silk have a preferred secondary structure and are strongly oriented, with the chains predominantly parallel to the fiber. As proposed previously, the alanine residues are predominantly found in a beta sheet conformation. The glycine residues are partly incorporated into the beta sheets and otherwise form helical structures with an approximate 3-fold symmetry.

Animals↗

PubMed2001

Manipulation of the director in bicellar mesophases by sample spinning: a new tool for NMR spectroscopy.

It is shown that bicellar nematic liquid-crystalline phases can be oriented with the director (the normal to the bicellar plane) at an arbitrary angle to the applied magnetic field by sample rotation around one axis (variable-angle sample spinning) or around two axes successively (switched-angle spinning). This promises to open novel possibilities for NMR studies of bicelles and proteins incorporated into bicelles or dissolved in a solution containing bicelles, including the correlation of several orientations in a two-dimensional NMR experiment.

Journal Article↗

PubMed2000

Solid-state NMR determination of the secondary structure of Samia cynthia ricini silk.

Silks are fibrous proteins that form heterogeneous, semi-crystalline solids. Silk proteins have a variety of physical properties reflecting their range of functions. Spider dragline silk, for example, has high tensile strength and elasticity, whereas other silks are better suited to making housing, egg sacs or the capture spiral of spiders' webs. The differing physical properties arise from variation in the protein's primary and secondary structure, and their packing in the solid phase. The high mechanical performance of spider dragline silk, for example, is probably due to a beta-sheet conformation of poly-alanine domains, embedded as small crystallites within the fibre. Only limited structural information can be obtained from diffraction of silks, so further characterization requires spectroscopic studies such as NMR. However, the classical approach to NMR structure determination fails because the high molecular weight, repetitive primary structure and structural heterogeneity of solid silk means that signals from individual amino-acid residues cannot be resolved. Here we adapt a recently developed solid-state NMR technique to determine torsion angle pairs (phi, psi) in the protein backbone, and we study the distribution of conformations in silk from the Eri silkworm, Samia cynthia ricini. Although the most probable conformation in native fibres is an anti-parallel beta-sheet, film produced from liquid directly extracted from the silk glands appears to be primarily alpha-helical.

Animals↗

PubMed1999

INADEQUATE-CR experiments in the solid state.

Through-bond connectivity can be probed by J couplings. For effective two-spin systems, the INADEQUATE experiment is highly valuable in liquid-state spectroscopy. It is the purpose of this Communication to show that in-phase INADEQUATE-CR spectra, where the intensity is concentrated in only one line of the J splitted doublet, can be obtained from solid-state samples. The problem of the cancellation of nonresolved multiplet lines, as experienced typically in INADEQUATE spectra in the solid, is resolved and the (13)C spectra become simpler because the number of resonance lines is reduced. Furthermore, a gain in signal intensity by 2 can, theoretically, be achieved. We limit the discussion to two-spin systems. In the present context, a two-spin system is defined considering the J coupling only. When the dipolar coupling is also taken into account, the two-spin system will usually become a many-spin system, but in the present context this is not relevant.

Animals↗

PubMedDate not supplied

Supercontracted spider dragline silk: a solid-state NMR study of the local structure.

The local structure of supercontracted dragline silk from the spider Nephila madagascariensis was investigated by solid-state nuclear magnetic resonance. Two-dimensional (2D) spin-diffusion experiments did not show any significant conformational changes in short-range order (and the secondary structure of the protein) upon supercontraction. Our results are in accordance with the proposal by Vollrath et al. (Proc R Soc London B 1996;263:147-151) that urea-supercontraction does not alter the local structure of spider dragline silk fundamentally. However, significant differences in the dynamics of the polypeptide chain upon supercontraction are detected at room temperature. At low temperature, these dynamics are frozen out. In addition, the role of the solvent (water) in the silk is investigated in Nephila edulis. Mobile water is detected at temperatures significantly below the freezing point of bulk water.

Alanine↗