Biomedical subjects

J K Swadesh

Publications and source records attributed to J K Swadesh.

8 recordsLinked to original sources

PubMed1993

Structural difference between polymerized and non-polymerized fragment X, obtained by plasmin digest of fibrinogen.

Fragment X (LMrFX) was obtained as low molecular weight preparations from a late stage 2 plasmin digest of human fibrinogen. The thrombin-treated LMrFX preparations, which resulted in impaired polymerization, were further subfractionated into polymerized and non-polymerized components. The fractions were examined by SDS-PAGE and immunochemical methods. In polymerized fractions, more peptide bands were observed on SDS-PAGE in the reduced state than in non-polymerized fractions. Both fractions contained a similar number of internal cleavages in the A alpha, B beta and gamma chains, which are linked by disulfide bonds. Thus, the partial deficiencies in polymerization sites of the carboxy terminal region of the gamma chain and the amino terminal portions of the B beta chain, as well as internal cleavage, were considered to participate in the impairment of the thrombin-induced polymerization of LMrFX.

Amino Acid Sequence↗

PubMed1990

Purification and characterization of hementin, a fibrinogenolytic protease from the leech Haementeria ghilianii.

The fibrinogenolytic enzyme hementin, present in extracts of the posterior salivary glands of the giant leech Haementeria ghilianii, was isolated by ultrafiltration, high-performance ion-exchange chromatography and subsequent reversed-phase liquid chromatography. Approximately 100 micrograms (1 nmol) of hementin, present at less than 0.5% in the crude leech salivary extract, was brought to about 90% purity in three steps. Hementin migrated at an Mr of about 73,000 on non-reducing sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and at 82,000 on reducing SDS-PAGE. The amino terminal sequence was determined to be TTLTE-PEPDL. The amino terminal sequences of two inactive proteins that partially coeluted with hementin in the first chromatographic step were also determined.

Amino Acid Sequence↗

PubMed1990

High-speed tryptic fingerprinting.

Poly(styrene/divinylbenzene) has found use only recently as a high-performance reversed-phase material. There has been relatively little detailed investigation of the properties of poly(styrene/divinylbenzene) in gradient separation of peptides. It was recently found that both the selectivity and peak capacity of poly(styrene/divinylbenzene) are comparable to those of alkyl bonded phases in tryptic mapping. The present work demonstrates that increasing the temperature and flow rate of the mobile phase at constant column inlet pressure increases the efficiency of a poly(styrene/divinylbenzene) column, permitting rapid separations.

Animals↗

PubMed1988

Reversed-phase liquid chromatography and sodium dodecyl sulfate polyacrylamide gel electrophoresis characteristics of a recombinant DNA derived malaria antigen.

This paper presents results from analysis of a sample of SK&F 105154 (R32NS1(81], a malaria vaccine candidate produced in Escherichia coli, and discusses some analytical issues of general relevance to the characterization of such products derived from recombinant DNA technology. Anomalous migration and staining behavior were observed in sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). Reversed-phase liquid chromatography (RPLC) appeared to resolve four minor components from the principal band, but the minor peaks were found to consist of numerous components resolvable by SDS-PAGE. Western blotting visualized certain components that were not adequately stained by either Coomassie or silver stain. None of the techniques that were employed were individually adequate to characterize the sample, but, taken together, were adequate to characterize the sample and to identify one principal degradation pathway. Degradation within the NS1(81) region decreases the RPLC retention time, while degradation within the R32 segment increases the retention time.

Amino Acid Sequence↗

PubMed1987

Thermodynamics of the quenching of tyrosyl fluorescence by dithiothreitol.

Tyrosyl fluorescence quenching by oxidized dithiothreitol (DTTo) in N-acetyl-L-tyrosine N'-methylamide, and native bovine pancreatic ribonuclease A and its reduced, S-methylated form, in aqueous solution is studied at pH 3.0. From the temperature dependence of the fluorescence quenching, it is demonstrated that the mechanism of the quenching process is probably static (formation of a complex), and not dynamic (collisional), in origin. Although other quenching mechanisms cannot be ruled out, our proposition that the quenching of tyrosyl fluorescence in these molecules is due to the formation of a complex between the tyrosyl moieties and DTTo is consistent with previously reported evidence indicating a strong tendency for aromatics to complex with various disulfide-containing compounds. The strength of binding is approximately the same for these three tyrosine-containing compounds, indicating that the microenvironments of their tyrosyl residues may be similar. With 1 M as the reference standard state, the following average thermodynamic parameters are established for the complexation (at 298 K): delta G0 = -3.32 kcal/mol, delta H0 = -1.1 kcal/mol, and delta S0 = 7.4 eu. The large positive value of delta S0 suggests that hydrophobic interactions may play an important role in the stabilization of such tyrosyl-disulfide complexes; the negative value of delta H0 suggests that polar interactions may also contribute to the formation of these complexes. Some possible implications with regard to protein-folding studies are discussed.

Amino Acids↗

PubMed1984

Sodium sulfite as an antioxidant in the acid hydrolysis of bovine pancreatic ribonuclease A.

Treatment of hydrochloric acid with sodium sulfite prior to the acid hydrolysis of bovine pancreatic ribonuclease A has been found to suppress the oxidation of cystine, methionine, and tyrosine without adversely affecting the recoveries of other amino acids. Statistical analysis of the results indicated that the assumption of the independence of the mean and the variance, an assumption commonly used in the evaluation of the effects of various treatments, may not be valid in evaluating antioxidants used in the acid hydrolysis of proteins.

Amino Acids↗

PubMed1984

Local structure involving histidine-12 in reduced S-sulfonated ribonuclease A detected by proton NMR spectroscopy under folding conditions.

The C epsilon H proton resonance of His-12 of reduced cysteine S-sulfonated bovine pancreatic ribonuclease A exhibits a nonlinear temperature dependence of the chemical shift in its 1H-NMR spectrum at an apparent pH of 3.0. At temperatures below ca. 35 degrees C, the temperature dependence of the chemical shift of the His-12 C epsilon H resonance is opposite in sign to those of His-48, His-105, and His-119. At temperatures above ca. 35 degrees C, the temperature dependence of the chemical shift of the His-12 C epsilon H resonance is similar to those of the other three His C epsilon H resonances. These data indicate the existence of an equilibrium between locally ordered and locally disordered environments of His-12 in the sulfonated protein at temperatures below ca. 35 degrees C. The ordered and disordered conformations interconvert at a rate that is fast relative to the 1H-NMR chemical shift time scale--i.e., the locally ordered structure has a lifetime of much less than 7 msec. These results demonstrate that short- and medium-range interactions can define short-lived local structures under conditions of temperature and solution composition at which the native protein structure is stable. Furthermore, they demonstrate the utility of reduced derivatives of disulfide-containing proteins as model systems for the identification of local structures that may play a role as early-forming chain-folding initiation structures.

Animals↗

PubMedDate not supplied

High-speed tryptic fingerprinting.

Animals↗