PubMed Health⌕ Search

Biomedical subjects

J N Bacro

Publications and source records attributed to J N Bacro.

4 recordsLinked to original sources

A point pattern model of the spread of foot-and-mouth disease.

The spatial spread of foot-and-mouth disease (FMD) is influenced by several sources of spatial heterogeneity: heterogeneity of the exposure to the virus, heterogeneity of the animal density and heterogeneity of the networks formed by the contacts between farms. A discrete space model assuming that farms can be reduced to points is proposed to handle these different factors. The farm-to-farm process of transmission of the infection is studied using point-pattern methodology. Farm management, commercial exchanges, possible airborne transmission, etc. cannot be explicitly taken into account because of lack of data. These latter factors are introduced via surrogate variables such as herd size and distance between farms. The model is built on the calculation of an infectious potential for each farm. This method has been applied to the study of the 1967-1968 FMD epidemic in UK and allowed us to evaluate the spatial variation of the probability of infection during this epidemic. Maximum likelihood estimation has been conducted conditional on the absence of data concerning the farms which were not infected during the epidemic. Model parameters have then been tested using an approximated conditional-likelihood ratio test. In this case study, results and validation are limited by the lack of data, but this model can easily be extended to include other information such as the effect of wind direction and velocity on airborne spread of the virus or the complex interactions between the locations of farms and the herd size. It can also be applied to other diseases where point approximation is convenient. In the context of an increase of animal density in some areas, the model explicitly incorporates the density and known epidemiological characteristics (e.g. incubation period) in the calculation of the probability of FMD infection. Control measures such as vaccination or slaughter can be simply introduced, respectively, as a reduction of the susceptible population or as a reduction of the source of infection.

Animal Husbandry↗

Sequence alignment: an approximation law for the Z-value with applications to databank scanning.

The Z-value is an attempt to estimate the statistical significance of a Smith and Waterman dynamic programming alignment score (H-score) through the use of a Monte-Carlo procedure. In this paper, we give an approximation for the Z-value law deduced from the Poisson clumping heuristic developed by Waterman and Vingron (Stat. Sci. 9 (1994) 367) in the case of independent and identically distributed sequences comparison. As for non-gapped alignment scores, our approximation is of Gumbel type but with parameters that are sequence independent. This result makes clear the related experimental results mentioned by Comet et al. (Comput. Chem. 23 (1999) 317). Using 'quasi-real' sequences (i.e. randomly shuffled sequences of the same length and amino acid composition as the real ones) we investigate the relevance of our approximation result. Since the Monte-Carlo approach we use generates a bias for the Gumbel decay parameter estimation, a correction procedure is proposed. Applications to real sequences are considered and we show how our results can be used to detect the potential biological relationships between real sequences.

Computing Methodologies↗

Brief communication: estimates of some demographic parameters in a Neolithic rock-cut chamber (approximately 2000 BC) using iterative techniques for aging and demographic estimators.

Two new techniques-one anthropological, which estimates the mean age at death for adult skeletons, the other demographic, which gives main survivorship curve parameters-are used on a sample of skeletons (N approximately 170) discovered in a Neolithic rock-cut chamber (Loisy-en-Brie, France). The iterative technique for aging used a stochastic sampled F matrix derived from the trabecular involution of the femoral head observed in the reference collection of Coimbra (Portugal; N = 421). The results, obtained from techniques and data, independent of each other, are strongly consistent. Overall, they give a life expectancy at birth of about 25-28 years and the probability of death at 1 and 5 years, respectively, of about .271-.249 and .429-.380.

Adolescent↗

Isolation by distance, trend surface analysis, and spatial autocorrelation.

The isolation by distance model is both a population process and a surface model. In this model the surface is, on average, flat in every direction. By contrast, probably most observed genetic surfaces exhibit trends generated by complex long-distance populational processes. When one estimates the parameters of a Malécot-Morton equation for those surfaces, the isolation by distance model does not fit. In the simplest case, in first-order trends (two-dimensional clines) the genetic differentiation increases dramatically, faster per unit distance than it would by isolation by distance alone. When isolation by distance takes place but is hidden through the apparent and complicated relief of a surface, another surface model incorporating trend spatial analysis can bypass the difficulty of estimating the isolation by distance process if approached through the Malécot-Morton equation or through a measure of spatial autocorrelation.

ABO Blood-Group System↗