PubMed Health⌕ Search

Biomedical subjects

J Olvera

Publications and source records attributed to J Olvera.

At least 19 recordsLinked to original sources

Retroviral cDNA integration: stimulation by HMG I family proteins.

To replicate, a retrovirus must synthesize a cDNA copy of the viral RNA genome and integrate that cDNA into a chromosome of the host. We have investigated the role of a host cell cofactor, HMG I(Y) protein, in integration of human immunodeficiency virus type 1 (HIV-1) and Moloney murine leukemia virus (MoMLV) cDNA. Previously we reported that HMG I(Y) cofractionates with HIV-1 preintegration complexes (PICs) isolated from freshly infected cells. PICs depleted of required components by treatment with high concentrations of salt could be reconstituted by addition of purified HMG I(Y) in vitro. Here we report studies using immunoprecipitation that indicate that HMG I(Y) is associated with MoMLV preintegration complexes. In mechanistic studies, we show for both HIV-1 and MoMLV that each HMG I(Y) monomer must contain multiple DNA binding domains to stimulate integration by HMG I(Y)-depleted PICs. We also find that HMG I(Y) can condense model HIV-1 or MoMLV cDNA in vitro as measured by stimulation of intermolecular ligation. This reaction, like reconstitution of integration, depends on the presence of multiple DNA binding domains in each HMG I(Y) monomer. These data suggest that binding of multivalent HMG I(Y) monomers to multiple cDNA sites compacts retroviral cDNA, thereby promoting formation of active integrase-cDNA complexes.

DNA, Complementary↗

Simultaneous multiple analyte detection using fluorescent peptides and capillary isoelectric focusing.

Analyte-specific detection based on the isoelectric point of the detection moiety is a new concept that is under investigation at Vysis. We have developed methods for the synthesis of of fluorescent synthetic peptides that can be conjugated to bioanalytes such as nucleic acids and antibodies, processed in a hybridization or binding assay, and then chemically released prior to detection by capillary isoelectric focusing (cIEF)-laser-induced fluorescence (LIF) detection. A two-step cIEF method in coated capillaries using salt mobilization has been used that produces high peak efficiencies and good assay reproducibility. The concentration by focusing aspect of cIEF, which allows for the entire capillary to be filled with sample, enables detection limits in the pM as opposed to sub-nM level for conventional capillary electrophoresis (CE)-LIF. The simultaneous multiple detection of eleven different focusing entities has been achieved.

Amino Acid Sequence↗

The primary structures of rat ribosomal proteins S3a (the V-Fos transformation effector) and of S3b.

The amino acid sequence of the rat 40S ribosomal subunit protein S3a was deduced from the sequence of nucleotides in two recombinant cDNAs and confirmed by the determination of the NH2-terminal sequence by Edman degradation. Ribosomal protein S3a has 263 amino acids (the NH2-terminal methionine is removed after translation of the mRNA) and the molecular weight is 29,794. The protein designated S3b has the same amino acid sequence as S3a except that it lacks the carboxyl-terminal 12 residues. We are unable to determine whether there are separate genes for S3a and S3b, or whether there is a single gene and alternate splicing of the precursor to yield separate mRNAs for S3a and S3b, or whether there is a single gene and a single mRNA whose translation yields S3a which is converted by proteolysis, either physiological or fortuitous, to S3b. The mRNA for S3a is about 1000 nucleotides in length. Hybridization of cDNA to digests of nuclear DNA suggests that there are 8-13 copies of the S3a gene. Rat ribosomal protein S3a is identical to the product of the rat Fte-1 gene which encodes the V-Fos transformation effector; S3a is also related to the plant protein cyc07, which is encoded by a cell cycle S-phase specific gene.

Alternative Splicing↗

The primary structure of rat ribosomal protein L14.

The amino acid sequence of the rat 60S ribosomal subunit protein L14 was deduced from the sequence of nucleotides in two recombinant cDNAs. Ribosomal protein L14 has 213 amino acids (the NH2-terminal methionine is removed after translation of the mRNA); the molecular weight is 23,193. Hybridization of the cDNA to digests of nuclear DNA suggests that there are 6 to 8 copies of the L14 gene. The mRNA for the protein is about 800 nucleotides in length. Rat L14 is related to a number of previously unidentified ribosomal proteins from other eukaryotes but not to any from archaebacteria or eubacteria. The carboxyl-terminal amino acid sequences of rat L14 and of chicken histone H1 are related. Mutation of the Drosophila melanogaster homolog of rat L14 causes a severe Minute phenotype.

Amino Acid Sequence↗

The primary structure of rat ribosomal protein L10a.

The amino acid sequence of the rat 60S ribosomal subunit protein L1Oa was deduced from the sequence of nucleotides in a recombinant cDNA. Ribosomal protein L10a has 217 amino acids and has a molecular weight of 24,815. Hybridization of the cDNA to digests of nuclear DNA suggests that there are 7 to 1O copies of the L10a gene. The mRNA for the protein is about 760 nucleotides in length. Rat L1Oa is related to ribosomal proteins from other eukaryotes and from archaebacteria.

Amino Acid Sequence↗

The primary structures of rat ribosomal proteins L4 and L41.

The amino acid sequences of the rat 60S ribosomal subunit proteins L4 and L41 were deduced from the sequences of nucleotides in recombinant cDNAs. Ribosomal protein L4 has 421 amino acids; the molecular weight is 47,280. L41 is the smallest ribosomal protein; it has 25 amino acids and a molecular weight of 3,454. Hybridization of the cDNAs to digests of nuclear DNA suggests that there are 7 to 8 copies of the L4, and 9 to 12 of the L41, genes. The mRNA for L4 is about 1,500 nucleotides in length and that for L41 about 500 nucleotides. The 5' noncoding sequence of the L4 cDNA is exceptional in that it has, in addition to a short polypyrimidine sequence at the 5' end, a second stretch of 15 consecutive pyrimidines near the site of initiation of translation. The 3' noncoding sequence of the L41 mRNA is unusual in that it is at least 246 nucleotides long. Rat L4 and L41 are related to ribosomal proteins from other eukaryotes.

Amino Acid Sequence↗

The primary structures of rat ribosomal proteins: the characterization of the cDNAs for S21 and L39, corrections in the sequences of L7 and L18a, and the identification of L33.

cDNAs for rat ribosomal proteins S21 and L39 were characterized. S21 has 83 amino acids and a molecular weight of 9,121; L39 has 50 amino acids and a molecular weight of 6,271. There are 8 to 9 copies of the S21, and 9 to 11 copies of the L39 genes. The mRNA for S21 is about 500 nucleotides in length and for L39 it is about 450. Rat S21 and L39 are related to ribosomal proteins from other species. Corrections have been made in the amino acid sequences of L7 and L18a. The rat ribosomal protein designated L33 from its coordinates on two-dimensional gels has been found, from its amino acid sequence, to be identical to S24.

Amino Acid Sequence↗

The primary structure of rat ribosomal protein L24.

The amino acid sequence of the rat 60S ribosomal subunit protein L24 was deduced from the sequence of nucleotides in a recombinant cDNA. Ribosomal protein L24 has 157 amino acids; the molecular weight is 17,767. Hybridization of the cDNA to digests of nuclear DNA suggests that there are 9 to 11 copies of the L24 gene. The mRNA for the protein is about 650 nucleotides in length. Rat L24 is related to ribosomal proteins from other eukaryotes and from archaebacteria.

Amino Acid Sequence↗

The primary structure of rat ribosomal protein S23.

The amino acid sequence of the rat 40S ribosomal subunit protein S23 was deduced from the sequence of nucleotides in a recombinant cDNA. Ribosomal protein S23 has 142 amino acids, the NH2-terminal methionine is removed after translation of the mRNA, and a molecular weight of 15,666. Hybridization of the cDNA to digests of nuclear DNA suggests that there are 6 to 13 copies of the S23 gene. The mRNA for the protein is about 650 nucleotides in length. Rat S23 is identical to a human ribosomal protein and is also related to Saccharomyces cerevisiae S28, to Tetrahymena thermophila S12, and to the prokaryotic S12 family of ribosomal proteins.

Amino Acid Sequence↗

The primary structure of rat ribosomal protein L13.

The amino acid sequence of the rat 60S ribosomal subunit protein L13 was deduced from the sequence of nucleotides in two recombinant cDNAs. Ribosomal protein L13 has 210 amino acids, the NH2-terminal methionine is removed after translation of the mRNA and has a molecular weight of 24,094. Hybridization of the cDNA to digests of nuclear DNA suggests that there are 8 to 10 copies of the L13 gene. The mRNA for the protein is about 870 nucleotides in length. Rat L13 is related to ribosomal proteins from other eukaryotes.

Amino Acid Sequence↗

The primary structure of rat ribosomal protein L15.

The amino acid sequence of the rat 60S ribosomal subunit protein L15 was deduced from the sequence of nucleotides in two recombinant cDNAs. Ribosomal protein L15 has 203 amino acids, the NH2-terminal methionine is removed after translation of the mRNA, and has a molecular weight of 24,000. Hybridization of the cDNA to digests of nuclear DNA suggests that there are 13 to 15 copies of the L15 gene. The mRNA for the protein is about 850 nucleotides in length. Rat L15 is related to ribosomal proteins from other eukaryotes. Rat L15 has the hexapeptide, TYKFFE, that also occurs in the amyloidogenic glycoprotein A4 which is associated with Alzheimer's disease and Down's Syndrome.

Amino Acid Sequence↗

The primary structure of rat ribosomal protein S15a.

The amino acid sequence of the rat 40S ribosomal subunit protein S15a was deduced from the sequence of nucleotides in two recombinant cDNAs. Ribosomal protein S15a has 129 amino acids, the NH2-terminal methionine is removed after translation of the mRNA and has a molecular weight of 14,698. Hybridization of the cDNA to digests of nuclear DNA suggests that there are 10 to 15 copies of the S15a gene. The mRNA for the protein is about 650 nucleotides in length. Rat S15a is related to ribosomal proteins from other eukaryotes, from eubacteria, and from archaebacteria.

Amino Acid Sequence↗

A leucine zipper-like motif and a basic region-leucine zipper-like element in rat ribosomal protein L13a. Identification of the tum- transplantation antigen P198.

The amino acid sequence of the rat 60 S ribosomal subunit protein L13a was deduced from the sequence of nucleotides in two recombinant cDNAs. Mature ribosomal protein L13a has 202 amino acids (the NH2-terminal methionine is removed after translation of the mRNA) and a M(r) of 23,330. Hybridization of the L13a cDNA to digests of nuclear DNA suggests that there are 9-11 copies of the L13a gene. The mRNA for the protein is approximately 800 nucleotides in length. Rat L13a is related to the Saccharomyces cerevisiae ribosomal proteins that have been provisionally designated rp22 and rp23 and to the eubacterial and archaebacterial family of L13 ribosomal proteins. The mouse tum- transplantation antigen P198 is a mutant of the mouse homolog of rat ribosomal protein L13a. Rat ribosomal protein L7 has, at its NH2 terminus, five tandem repeats of a similar sequence of 12 amino acids (Lin, A., Chan, Y. L., McNally, J., Peleg, D., Meyuhas, O., and Wool, I. G. (1987) J. Biol. Chem. 262, 12665-12671); L13a has, in its carboxyl-terminal region, amino acid sequences with significant identity to L7 repeats 1, 3, and 5. L13a also has a number of short amino acid sequences that are repeated, a leucine zipper-like motif at its NH2 terminus, and a potential basic region-leucine zipper element in its carboxyl-terminal region.

Amino Acid Sequence↗

The carboxyl extension of a ubiquitin-like protein is rat ribosomal protein S30.

The amino acid sequence of the rat 40 S ribosomal subunit protein S30 was deduced from the sequence of nucleotides in a recombinant cDNA and confirmed by the determination of the 18 residues at the NH2 terminus of the protein. Unlike the majority of ribosomal proteins, which are unprocessed primary products of the translation of their mRNAs, S30 is formed by cleavage from a larger hybrid protein. The NH2-terminal polypeptide has 38% identity with ubiquitin and contains the characteristic carboxyl-terminal Gly-Gly dipeptide of this family of proteins. S30 has 59 amino acids and the molecular weight is 6,643; the ubiquitin-like sequence has 74 residues and the molecular weight is 7,634. The hybrid protein is encoded in each of the 8-10 members of the family of rat S30 genes; there is, however, only a single species of mRNA which contains the sequences for both proteins. The coding sequence of the hybrid protein occurs in the reverse polarity in the genome of the Finkel-Biskis-Reilly murine sarcoma virus.

Amino Acid Sequence↗

The primary structure of rat ribosomal protein S9.

The amino acid sequence of the rat 40S ribosomal subunit protein S9 was deduced from the sequence of nucleotides in a recombinant cDNA. Ribosomal protein S9 has 193 amino acids, the NH2-terminal methionine is removed after translation of the mRNA, and has a molecular weight of 22,360. Hybridization of the cDNA to digests of nuclear DNA suggests that there are 14 to 16 copies of the S9 gene. The mRNA for the protein is about 1,000 nucleotides in length in part because of an especially long 5' noncoding region (103 nucleotides). Rat S9 is related to ribosomal proteins from other eukaryotes, Saccharomyces cerevisiae YS11 and Dictyostelium discoideum rp 1024, and to the eubacterial, archaebacterial, and chloroplast family of S4 ribosomal proteins. We have identified the product of the Trypanosoma brucei gene U as the homolog of rat ribosomal protein S9.

Amino Acid Sequence↗

The primary structure of rat ribosomal protein L29.

The amino acid sequence of the rat 60S ribosomal subunit protein L29 was deduced from the sequence of nucleotides in a recombinant cDNA. Ribosomal protein L29 has 155 amino acids, the NH2-terminal methionine is removed after translation of the mRNA, and has a molecular weight of 17,183. Hybridization of the cDNA to digests of nuclear DNA suggests that there are 20 to 22 copies of the L29 gene. The mRNA for the protein is about 750 nucleotides in length. Rat L29 is related to yeast ribosomal protein YL43.

Amino Acid Sequence↗

The primary structure of L37--a rat ribosomal protein with a zinc finger-like motif.

The amino acid sequence of the rat 60S ribosomal subunit protein L37 was deduced from the sequence of nucleotides in a recombinant cDNA. Ribosomal protein L37 has 96 amino acids, the NH2-terminal methionine is removed after translation of the mRNA, and has a molecular weight of 10,939. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type. Hybridization of the cDNA to digests of nuclear DNA suggests that there are 13 or 14 copies of the L37 gene. The mRNA for the protein is about 500 nucleotides in length. Rat L37 is related to Saccharomyces cerevisiae ribosomal protein YL35 and to Caenorhabditis elegans L37. We have identified in the data base a DNA sequence that encodes the chicken homolog of rat L37.

Amino Acid Sequence↗

The primary structure of rat ribosomal protein L36.

The amino acid sequence of the rat 60S ribosomal subunit protein L36 was deduced from the sequence of nucleotides in a recombinant cDNA. Ribosomal protein L36 has 104 amino acids, the NH2-terminal methionine is removed after translation of the mRNA and has a molecular weight of 12,128. Hybridization of the cDNA to digests of nuclear DNA suggests that there are 8 to 11 copies of the L36 gene. The mRNA for the protein is about 500 nucleotides in length. Rat L36 is related to yeast ribosomal protein YL39.

Amino Acid Sequence↗