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J P van der Walt

Publications and source records attributed to J P van der Walt.

At least 19 recordsLinked to original sources

Four new species in Lipomyces.

For new species in Lipomyces are described. In terms of nuclear genome comparison the genus Lipomyces comprises three species-clusters. A key to the nine species now assigned to the genus, is given. The delimitation of species by (i) rRNA nucleotide sequence analyses of the 18S and 25S subunits and (II) nDNA homology determinations, do not invariably lead to the recognition of congruent taxa. The family of the Lipomycetaceae, nevertheless provides an illuminative model for phylogenetic studies in terms of more appropriate ribosomal nucleotide sequence analyses of both its teleomorphic and anamorphic members.

Yeasts↗

Diversity and affinities among species and strains of Lipomyces.

Phylogenetic relationships of the yeast genus Lipomyces were studied using sequences from fragments of 5.8S rRNA gene and from internal transcribed spacer region ITS2 of 13 strains (7 type strains included) representing five species and subtaxa, and originating from different geographical locations (Japan, Trinidad, Nigeria, North America, Western Europe, Russia, South Africa, Mauritius). Parsimony and distance analyses were performed. Tree topology from the parsimony and distance analyses of the sequence confirmed the results of nDNA reassociation. Results segregate the 13 isolates of Lipomyces into five major clades.

Base Sequence↗

Lipomyces mesembrius sp. nov., a member of the L. starkeyi species-complex.

Lipomyces starkeyi is known to be associated with three strains-clusters showing high mutual nDNA reassociation within each cluster, but which reassociate ambiguously with the type of L. starkeyi. Representative strains of L. starkeyi and Cluster alpha were examined for possible genetic exchange by the prototrophic selection technique. Since no genetic recombination was detected, the strains are presumed to be genetically isolated. Cluster alpha is consequently assigned to the rank of species as Lipomyces mesembrius. A description of the new species is given. Lipomyces kononenkoae ssp. spencermartinsiae has been raised to the rank of species as L. spencermartinsiae.

Classification↗

Babjevia gen. nov.--a new genus of the Lipomycetaceae.

The species described as Lipomyces anomalus Babjeva & Gorin shows significant genetic and phenotypic divergence from the type species Lipomyces starkeyi Lodder & Kreger-van Rij in terms of rRNA base sequence substitution and ascosporal and septal ultrastructure. The species is consequently reclassified in the new, unispecific genus Babjevia, as Babjevia anomala.

Microscopy, Electron↗

Species delimitation in the genus Lipomyces by nuclear genome comparison.

Species delimitation in Lipomyces was attempted by nuclear genome comparison in conjunction with the re-evaluation of 48 physiological characters of 65 strains. High intraspecific (> 75%) and low interspecific (< 28%) similarity values established that L. japonicus, L. lipofer and L. tetrasporus are genetically isolated, and also distinct from L. kononenkoae and L. starkeyi. Ambiguous similarity values were obtained with L. kononenkoae and L. starkeyi. Strains previously assigned to L. kononenkoae constitute two related clusters. While similarity values within each cluster range from 76-99%, representatives of the two clusters reassociate for only 47%. Since these clusters are differentiated by their ecologically relevant maximum growth temperature, L. kononenkoae is subdivided. Strains previously assigned to L. starkeyi resolve into four closely related clusters. While similarity values within each cluster range from 78-100%, representatives of the four clusters reassociate for only 59-69%. Since these four clusters are poorly differentiated, the subdivision of L. starkeyi does not appear possible without recourse to other criteria. Four unassigned strains constitute a further two clusters. Reassociation within these clusters is of the order of 91-100%, while reassociation between them occurs only at 59%. Reassociation of representatives of these clusters with those of the L. kononenkoae and L. starkeyi complexes is around 40% and 31%, respectively. These two clusters consequently appear to be intermediate between L. kononenkoae and L. starkeyi, and will, as such, have to be considered in any delimitation of these two species. A key to the taxa of Lipomyces and related genera of the Lipomycetaceae is given.

Base Composition↗

The Lipomycetaceae, a model family for phylogenetic studies.

The Lipomycetaceae (Endomycetales) are known from the genera Dipodascopsis, Lipomyces and Zygozyma with budding anamorphic states in Myxozyma. The family is easily recognized culturally and physiologically but is phenotypically and ecologically extremely diverse. This natural taxon is phylogenetically distinct from the Saccharomycetaceae, but probably related to the Dipodascaceae. The possible evolution of the lipomycetaceous anamorphs is discussed.

Genetic Variation↗

Myxozyma neotropica sp. nov. (Candidaceae)--a new yeast species from Costa Rica.

Two strains of an undescribed, soil-borne species of the genus Myxozyma were recovered. They differ from other accepted species of this genus in their carbon assimilation pattern, mol% G+C and low extent of DNA complementary. A description of the new species, Myxozyma neotropica, and a key to the species accepted in the genus are given.

Base Composition↗

Septal micropores in Zygozyma and their taxonomic significance.

Septal micropores or plasmadesmal canals have been observed in two species of the lipomycetaceous genus Zygozyma. The presence of these canals is considered as further evidence for the connexion between the Lipomycetaceae and the Dipodascaceae. The genus Zygozyma has been emended.

Cell Membrane↗

Pichia euphorbiae sp. nov., a new haploid heterothallic yeast species.

Representatives of an undescribed, haploid, heterothallic yeast species, Pichia euphorbiae, have been recovered from insect-infested specimens of Euphorbia ingens. The new species is considered to be another representative of the apparently related group of heterothallic species, comprising Pichia rhodanensis, Pichia wickerhamii, Pichia veronae, Pichia amylophila, Pichia mississippiensis and Pichia meyerae. While no mating response was observed in interspecific mixtures of the mating types of the new species with the mating types of the first five mentioned species, a sexual response, manifested by the formation of non-sporulating zygotes, was nevertheless detected with the mating types of P. meyerae. Prototrophic hybrids obtained by crossing auxotrophic mutants of the mating types of P. euphorbiae and P. meyerae were found to be only partial recombinants. A description of the new species is given.

Ascomycota↗