Biomedical subjects

Jérôme Idier

Publications and source records attributed to Jérôme Idier.

5 recordsLinked to original sources

PubMed2006

Bayesian analysis of polyphonic western tonal music.

This paper deals with the computational analysis of musical audio from recorded audio waveforms. This general problem includes, as subtasks, music transcription, extraction of musical pitch, dynamics, timbre, instrument identity, and source separation. Analysis of real musical signals is a highly ill-posed task which is made complicated by the presence of transient sounds, background interference, or the complex structure of musical pitches in the time-frequency domain. This paper focuses on models and algorithms for computer transcription of multiple musical pitches in audio, elaborated from previous work by two of the authors. The audio data are supposedly presegmented into fixed pitch regimes such as individual chords. The models presented apply to pitched (tonal) music and are formulated via a Gabor representation of nonstationary signals. A Bayesian probabilistic structure is employed for representation of prior information about the parameters of the notes. This paper introduces a numerical Bayesian inference strategy for estimation of the pitches and other parameters of the waveform. The improved algorithm is much quicker and makes the approach feasible in realistic situations. Results are presented for estimation of a known number of notes present in randomly generated note clusters from a real musical instrument database.

Journal Article↗

PubMed2005

Statistical behavior of joint least-square estimation in the phase diversity context.

The images recorded by optical telescopes are often degraded by aberrations that induce phase variations in the pupil plane. Several wavefront sensing techniques have been proposed to estimate aberrated phases. One of them is phase diversity, for which the joint least-square approach introduced by Gonsalves et al. is a reference method to estimate phase coefficients from the recorded images. In this paper, we rely on the asymptotic theory of Toeplitz matrices to show that Gonsalves' technique provides a consistent phase estimator as the size of the images grows. No comparable result is yielded by the classical joint maximum likelihood interpretation (e.g., as found in the work by Paxman et al.). Finally, our theoretical analysis is illustrated through simulated problems.

Computer Simulation↗

PubMed2003

Unsupervised robust nonparametric estimation of the hemodynamic response function for any fMRI experiment.

This paper deals with the estimation of the blood oxygen level-dependent response to a stimulus, as measured in functional magnetic resonance imaging (fMRI) data. A precise estimation is essential for a better understanding of cerebral activations. The most recent works have used a nonparametric framework for this estimation, considering each brain region as a system characterized by its impulse response, the so-called hemodynamic response function (HRF). However, the use of these techniques has remained limited since they are not well-adapted to real fMRI data. Here, we develop a threefold extension to previous works. We consider asynchronous event-related paradigms, account for different trial types and integrate several fMRI sessions into the estimation. These generalizations are simultaneously addressed through a badly conditioned observation model. Bayesian formalism is used to model temporal prior information of the underlying physiological process of the brain hemodynamic response. By this way, the HRF estimate results from a tradeoff between information brought by the data and by our prior knowledge. This tradeoff is modeled with hyperparameters that are set to the maximum-likelihood estimate using an expectation conditional maximization algorithm. The proposed unsupervised approach is validated on both synthetic and real fMRI data, the latter originating from a speech perception experiment.

Algorithms↗

PubMed2003

Three-dimensional edge-preserving image enhancement for computed tomography.

Computed tomography (CT) images exhibit a variable amount of noise and blur, depending on the physical characteristics of the apparatus and the selected reconstruction method. Standard algorithms tend to favor reconstruction speed over resolution, thereby jeopardizing applications where accuracy is critical. In this paper, we propose to enhance CT images by applying half-quadratic edge-preserving image restoration (or deconvolution) to them. This approach may be used with virtually any CT scanner, provided the overall point-spread function can be roughly estimated. In image restoration, Markov random fields (MRFs) have proven to be very flexible a priori models and to yield impressive results with edge-preserving penalization, but their implementation in clinical routine is limited because they are often viewed as complex and time consuming. For these practical reasons, we focused on numerical efficiency and developed a fast implementation based on a simple three-dimensional MRF model with convex edge-preserving potentials. The resulting restoration method provides good recovery of sharp discontinuities while using convex duality principles yields fairly simple implementation of the optimization. Further reduction of the computational load can be achieved if the point-spread function is assumed to be separable. Synthetic and real data experiments indicate that the method provides significant improvements over standard reconstruction techniques and compares well with convex-potential Markov-based reconstruction, while being more flexible and numerically efficient.

Algorithms↗

PubMed2003

Marginal estimation of aberrations and image restoration by use of phase diversity.

We propose a novel method called marginal estimator for estimating the aberrations and the object from phase-diversity data. The conventional estimator found in the literature concerning the technique first proposed by Gonsalves has its basis in a joint estimation of the aberrated phase and the observed object. By means of simulations, we study the behavior of the conventional estimator, which is interpretable as a joint maximum a posteriori approach, and we show in particular that it has undesirable asymptotic properties and does not permit an optimal joint estimation of the object and the aberrated phase. We propose a novel marginal estimator of the sole phase by maximum a posteriori. It is obtained by integrating the observed object out of the problem. This reduces drastically the number of unknowns, allows the unsupervised estimation of the regularization parameters, and provides better asymptotic properties. We show that the marginal method is also appropriate for the restoration of the object. This estimator is implemented and its properties are validated by simulations. The performance of the joint method and the marginal one is compared on both simulated and experimental data in the case of Earth observation. For the studied object, the comparison of the quality of the phase restoration shows that the performance of the marginal approach is better under high-noise-level conditions.

Journal Article↗