Biomedical subjects

Jacco D van Beek

Publications and source records attributed to Jacco D van Beek.

5 recordsLinked to original sources

PubMed2006

Theory and applications of supercycled symmetry-based recoupling sequences in solid-state nuclear magnetic resonance.

We present the theoretical principles of supercycled symmetry-based recoupling sequences in solid-state magic-angle-spinning NMR. We discuss the construction procedure of the SR26 pulse sequence, which is a particularly robust sequence for double-quantum homonuclear dipole-dipole recoupling. The supercycle removes destructive higher-order average Hamiltonian terms and renders the sequence robust over long time intervals. We demonstrate applications of the SR26 sequence to double-quantum spectroscopy, homonuclear spin counting, and determination of the relative orientations of chemical shift anisotropy tensors.

Journal Article↗

PubMed2005

Symmetry-based recoupling of 17O-1H spin pairs in magic-angle spinning NMR.

We have performed magic-angle-spinning solid-state NMR experiments in which protons are recoupled to oxygen-17 nuclei by applying a symmetry-based recoupling sequence at the proton Larmor frequency. Two-dimensional quadrupole-dipole correlation spectra are produced, in which the second-order quadrupolar shift of the oxygen-17 central transition is correlated with the recoupled heteronuclear dipole-dipole interaction. These spectra are sensitive to the relative orientation of the electric field gradient at the site of the oxygen-17 nucleus and the O-H internuclear vector. We also demonstrate experiments in which polarization is transferred from protons to oxygen-17, and show that oxygen-17 signals may be selected according to the protonation state of the oxygen site. We discuss the small observed value of the heteronuclear dipolar splitting in the central-transition oxygen-17 spectra.

Journal Article↗

PubMed2005

A DOQSY approach for the elucidation of torsion angle distributions in biopolymers: application to silk.

Silk from the wild silkworm Samia cynthia ricini with a molecular mass of about 300kDa consists of alternating repeats of nano-crystalline poly-(Ala) and non-crystalline glycine-rich domains. The backbone torsion angles between pairs of these two amino acids is determined by DOQSY solid-state NMR spectroscopy: the alanine-rich domains are predominantly in a beta-sheet conformation, whereas the glycine-rich domains are found to be partially in an extended beta-sheet conformation and partially in an approximately 3(1)-helical conformation. In the cast film from liquid silk significantly different secondary structures were found: the alanine-rich domains are alpha-helical conformation, whereas the results for glycine-labelled sample are explained by a random-coil state. A detailed error analysis of the technique is presented.

Alanine↗

PubMed2005

Spherical tensor analysis of nuclear magnetic resonance signals.

In a nuclear magnetic-resonance (NMR) experiment, the spin density operator may be regarded as a superposition of irreducible spherical tensor operators. Each of these spin operators evolves during the NMR experiment and may give rise to an NMR signal at a later time. The NMR signal at the end of a pulse sequence may, therefore, be regarded as a superposition of spherical components, each derived from a different spherical tensor operator. We describe an experimental method, called spherical tensor analysis (STA), which allows the complete resolution of the NMR signal into its individual spherical components. The method is demonstrated on a powder of a (13)C-labeled amino acid, exposed to a pulse sequence generating a double-quantum effective Hamiltonian. The propagation of spin order through the space of spherical tensor operators is revealed by the STA procedure, both in static and rotating solids. Possible applications of STA to the NMR of liquids, liquid crystals, and solids are discussed.

Journal Article↗

PubMed2003

Inverse methods in two-dimensional NMR spectral analysis.

Solid-state NMR is a valuable technique for the study of disordered materials. Analysis of such spectra usually involves solution of so-called ill-posed inverse problems. Here we present a strategy for the analysis of two-parameter two-dimensional NMR problems and test it on 2D DECODER and DOQSY experiments. Using Monte Carlo tests, constraints are determined for the resolution and accuracy of the analysis for both experiments. The methods are finally applied to spectra of spider dragline silk, a heterogeneous solid fibrous protein.

Animals↗