Jacob Weiner | PubMed Health

PubMed2005

Pattern-oriented modeling of agent-based complex systems: lessons from ecology.

Agent-based complex systems are dynamic networks of many interacting agents; examples include ecosystems, financial markets, and cities. The search for general principles underlying the internal organization of such systems often uses bottom-up simulation models such as cellular automata and agent-based models. No general framework for designing, testing, and analyzing bottom-up models has yet been established, but recent advances in ecological modeling have come together in a general strategy we call pattern-oriented modeling. This strategy provides a unifying framework for decoding the internal organization of agent-based complex systems and may lead toward unifying algorithmic theories of the relation between adaptive behavior and system complexity.

Animals↗

PubMed2002

Size symmetry of competition alters biomass-density relationships.

As crowded populations of plants develop, the growth of some plants is accompanied by the death of others, a process called density-dependent mortality or 'self-thinning'. During the course of density-dependent mortality, the relationship between total population biomass (B) and surviving plant density (N) is allometric: B = aN(b). Essentially, increasing population biomass can be achieved only through decreasing population density. Variation in the allometric coefficient a among species has been recognized for many years and is important for management, assessment of productivity and carbon budgets, but the causes of this variation have not been elucidated. Individual-based models predict that size-dependent competition causes variation in the allometric coefficient. Using transgenic Arabidopsis with decreased plasticity, we provide experimental evidence that morphological plasticity of wild-type populations decreases the size asymmetry of competition for light and thereby decreases density-dependent mortality. This decrease in density-dependent mortality results in more biomass at a given density under size-symmetric compared with size-asymmetric competition.

Arabidopsis↗