Biomedical subjects

James P Shine

Publications and source records attributed to James P Shine.

7 recordsLinked to original sources

PubMed2006

Acceleration of amyloid beta-peptide aggregation by physiological concentrations of calcium.

Alzheimer disease is characterized by the accumulation of aggregated amyloid beta-peptide (Abeta) in the brain. The physiological mechanisms and factors that predispose to Abeta aggregation and deposition are not well understood. In this report, we show that calcium can predispose to Abeta aggregation and fibril formation. Calcium increased the aggregation of early forming protofibrillar structures and markedly increased conversion of protofibrils to mature amyloid fibrils. This occurred at levels 20-fold below the calcium concentration in the extracellular space of the brain, the site at which amyloid plaque deposition occurs. In the absence of calcium, protofibrils can remain stable in vitro for several days. Using this approach, we directly compared the neurotoxicity of protofibrils and mature amyloid fibrils and demonstrate that both species are inherently toxic to neurons in culture. Thus, calcium may be an important predisposing factor for Abeta aggregation and toxicity. The high extracellular concentration of calcium in the brain, together with impaired intraneuronal calcium regulation in the aging brain and Alzheimer disease, may play an important role in the onset of amyloid-related pathology.

Alzheimer Disease↗

PubMed2005

Concentrations of lead and mercury in multimedia samples from homes near the former Clark Air Base, Philippines.

We measured lead and mercury in samples collected from 31 homes in communities near the former Clark Air Base, Philippines during May and October 2002. Sample media included water used for drinking and cooking, house dust and entryway soil. Composite samples of 15 food items purchased at local markets were also collected. Samples were analyzed for total lead (Pb) and total mercury (Hg) to evaluate the relative importance of each media to residential exposure concentrations in the community adjacent to Clark (Community A) versus a control community 5 km away (Community B). In general, we measured low (e.g. background) to undetectable levels of the target analytes in all media sampled with two important exceptions. First, the Hg concentrations we measured in canned mackerel composites, which were within the range reported for mackerel from other locations worldwide, may pose a risk to pregnant women who are frequent consumers (e.g. one or more cans per day). Second, we measured Pb above the USEPA residential screening concentration (400 mug/g) in dust and soil from two homes, illustrating the need for periodic residential lead monitoring in these and other communities in the Philippines. We found no significant difference between Communities A and B with respect to Pb and Hg concentrations in water or food, although we were not able to detect very low levels of Pb in most of the foods we sampled because of trace Pb contamination added during sample homogenization. Although the Pb levels we measured in dust and soil from Community A homes were higher on average than Community B homes, the levels in both communities were low (e.g. background) thus we did not investigate the difference further. To our knowledge, these are the first reported measurements of Pb in house dust in the Philippines. The concentrations of Pb we measured in house dust were significantly higher than those in entryway soil from both communities, adding empirical support to the assertion that yard soil should not be considered a proxy for house dust in exposure studies in the Philippines or elsewhere.

Adolescent↗

PubMed2004

Equilibrium-based sampler for determining Cu2+ concentrations in aquatic ecosystems.

The bioavailability of potentially toxic metals in aquatic systems is frequently related to the dissolved free metal ion (M2+) concentration. However, typical methods used to determine M2+ are labor intensive or require sophisticated equipment. We developed an inexpensive, in situ sampling device--the "gellyfish"--that simplifies Cu2+ determinations in seawater. The gellyfish is a thin disk of polyacrylamide gel embedded with iminodiacetate (Id) groups bound to immobile beads. The sampler operates on the principle that the immobilized Id groups equilibrate with the Cu2+ concentration of the surrounding solution. Cu is then back-extracted into a known volume of 10% HNO3 and measured by inductively coupled plasma mass spectrometry (ICP-MS). In laboratory tests, we varied Cu2+ concentrations between 10(-12) and 10(-8) M and salinity between 5 and 35 ppt. Id-bound Cu (CuId(measured)) did not respond to changes in total Cu. However, CuId(measured) does increase in a predictable manner with increasing Cu2+, and prototype gellyfish precision (average coefficient of variation = 10%) is sufficient to resolve small differences in Cu2+ (+/-30%). Modeled Cu uptake, based on thermodynamic equilibrium speciation of Id within gellyfish, is a good predictor of CuId(measured) (r2 = 0.96 and n = 45).

Acrylic Resins↗

PubMed2004

Use of passive samplers to mimic uptake of polycyclic aromatic hydrocarbons by benthic polychaetes.

Experiments were conducted to test whether passive samplers made of low-density polyethylene (polyethylene devices, or PEDs) can estimate the extent of uptake of polycyclic aromatic hydrocarbons (PAHs) by benthic polychaetes (Nereis virens) in contaminated marine sediments. For a variety of PAHs, PEDs reached 90% equilibrium with sediment PAHs in 60 days or less. Using 60-day sediment bioaccumulation tests, we have demonstrated a significant relationship between PAH concentrations in the polychaetes and the PEDs (R2 = 0.67, p = 0.002), with the PEDs taking up less PAHs than the polychaetes. Because of this relationship, PEDs can potentially be used in a regulatory context to simulate uptake of bioavailable PAHs in contaminated marine sediments. The PED PAH concentrations were also used to calculate porewater PAH concentrations that allowed for the estimation of a linear free-energy relationship between the lipid-water distribution coefficient (Klip) and the octanol-water distribution coefficient (KOW) for PAH uptake in marine polychaetes (R2 = 0.94, p < 0.0001).

Animals↗

PubMed2004

Importance of black carbon in distribution and bioaccumulation models of polycyclic aromatic hydrocarbons in contaminated marine sediments.

The roles and relative importance of nonpyrogenic organic carbon (NPOC) and black carbon (BC) as binding phases of polycyclic aromatic hydrocarbons (PAHs) were assessed by their ability to estimate pore water concentrations and biological uptake in various marine sediments. Sediment bioaccumulation tests were performed with the marine polychaete Nereis virens, using a polyethylene device to estimate pore water concentrations of PAHs. Using existing partitioning data for pyrene and phenanthrene, it was found that the traditional Equilibrium Partitioning model, which assumes all organic carbon is NPOC (EqP(OC)), overestimated the measured pore water concentrations in the test sediments by one to three orders of magnitude. Instead, the measured pore water concentrations were better predicted from a distribution scenario that uses both BC and NPOC (EqP(NPOc,BC)) When comparing actual worm body burdens of pyrene and phenanthrene with the two model estimates of worm tissue concentrations, the EqP(OC) model tended to overestimate actual body burdens by three orders of magnitude, while the EqP(NPOC,BC) model came much closer to the true body burden values. The observed distribution of PAHs in the test sediments was used to calculate BC partition coefficients for five PAHs, which were one to two orders of magnitude higher than their corresponding organic carbon-normalized distribution coefficients, or K(OC)s. Together, these results suggest that, in certain situations, adding black carbon to distribution models may be necessary to predict accurately the bioavailability of PAHs.

Animals↗

PubMed2003

Receiver operating characteristic curve analysis of beach water quality indicator variables.

Receiver operating characteristic (ROC) curve analysis is a simple and effective means to compare the accuracies of indicator variables of bacterial beach water quality. The indicator variables examined in this study were previous day's Enterococcus density and antecedent rainfall at 24, 48, and 96 h. Daily Enterococcus densities and 15-min rainfall values were collected during a 5-year (1996 to 2000) study of four Boston Harbor beaches. The indicator variables were assessed for their ability to correctly classify water as suitable or unsuitable for swimming at a maximum threshold Enterococcus density of 104 CFU/100 ml. Sensitivity and specificity values were determined for each unique previous day's Enterococcus density and antecedent rainfall volume and used to construct ROC curves. The area under the ROC curve was used to compare the accuracies of the indicator variables. Twenty-four-hour antecedent rainfall classified elevated Enterococcus densities more accurately than previous day's Enterococcus density (P = 0.079). An empirically derived threshold for 48-h antecedent rainfall, corresponding to a sensitivity of 0.75, was determined from the 1996 to 2000 data and evaluated to ascertain if the threshold would produce a 0.75 sensitivity with independent water quality data collected in 2001 from the same beaches.

Boston↗

PubMed2003

Use of receiver operating characteristic curves to evaluate sediment quality guidelines for metals.

Receiver operating characteristic (ROC) curves are commonly used in the biomedical field to assess the quality of a diagnostic test. The area under an ROC curve, which ranges from 0.5 to 1.0, is a measure of the overall effectiveness of a diagnostic test. These curves can be used to elucidate compromises in sensitivity (ability to correctly classify a toxic sample as toxic) and specificity (ability to correctly classify a nontoxic sample as nontoxic) associated with a given threshold. In this study, ROC curves were used to evaluate methods for estimating acute toxicity of metals in marine sediments. Differences in the effectiveness of speciation (comparisons of labile sulfides with simultaneously extracted metals) and total sediment concentration (such as the National Oceanographic and Atmospheric Administration Guidelines, Washington, DC) approaches were assessed by using a database of field and laboratory spiked sediments. Despite uncertainties associated with these methods, the areas under the ROC curves ranged from 0.84 to 0.89 for all approaches tested, with no significant differences between speciation and whole sediment approaches. Thresholds commonly used by environmental managers, although yielding high sensitivity, came at the expense of low specificity. Thresholds providing desirable trade-offs in sensitivity and specificity generally are higher than commonly used thresholds.

Databases, Factual↗