Biomedical subjects

James R Chelikowsky

Publications and source records attributed to James R Chelikowsky.

15 recordsLinked to original sources

PubMed2006

Evolution of magnetism in iron from the atom to the bulk.

The evolution of the magnetic moment in iron clusters containing 20-400 atoms is investigated using first-principles numerical calculations based on density-functional theory and real-space pseudopotentials. Three families of clusters are studied, characterized by the arrangement of atoms: icosahedral, body-centered cubic centered on an atom site, and body-centered cubic centered on the bridge between two neighboring atoms. We find an overall decrease of magnetic moment as the clusters grow in size towards the bulk limit. Clusters with faceted surfaces are predicted to have magnetic moment lower than other clusters with similar size. As a result, the magnetic moment is observed to decrease as function of size in a nonmonotonic manner, which explains measurements performed at low temperatures.

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PubMed2006

Excitonic effects and optical properties of passivated CdSe clusters.

We calculate the optical properties of a series of passivated nonstoichiometric CdSe clusters using two first-principles approaches: time-dependent density functional theory within the local-density approximation, and by solving the Bethe-Salpeter equation for optical excitations with the GW approximation for the self-energy. We analyze the character of optical excitations leading to the first low-energy peak in the absorption cross section of these clusters. Within time-dependent density functional theory, we find that the lowest-energy excitation is mostly a single-level to single-level transition. In contrast, many-body methods predict a strong mixture of several different transitions, which is a signature of excitonic effects. The majority of the clusters have a series of dark transitions before the first bright transition. This may explain the long radiative lifetimes observed experimentally.

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PubMed2006

Real space pseudopotential calculations for copper clusters.

Neutral and anion clusters of copper, Cu(n) (n=3-11), are examined using real space pseudopotentials constructed within the local spin density approximation. We predict the ground state structure for each cluster, the binding energy, and the corresponding photoelectron spectra, which we compare to experiment. We find strong final state effects in the photoelectron spectra, especially for the smaller clusters. The binding energy as a function of cluster size tracks well with the measured values, although the magnitude of the binding energy exceeds the experimental values by approximately 20%, as expected for the local spin density approximation.

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PubMed2006

Self-purification in semiconductor nanocrystals.

Doping of nanocrystals is an important and very difficult task. "Self-purification" mechanisms are often claimed to make this task even more difficult, as the distance a defect or impurity must move to reach the surface of a nanocrystal is very small. We show that self-purification can be explained through energetic arguments and is an intrinsic property of defects in semiconductor nanocrystals. We find the formation energies of defects increases as the size of the nanocrystal decreases. We analyze the case of Mn-doped CdSe nanocrystals and compare our results to experimental findings.

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PubMed2006

Symmetry considerations in CdSe nanocrystals.

Semiconductor nanocrystals or quantum dots show a wide range of physical properties depending on their size or shape. In this paper, we show that symmetry is also an important characteristic that can lead to different electronic and optical properties. We use pseudopotential density-functional theory, within a real space approach, and address the sensitivity of electronic and optical properties with respect to the symmetry point groups associated to CdSe nanocrystals.

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PubMed2006

Energetic pinning of magnetic impurity levels in quantum-confined semiconductors.

Donor- and acceptor-type (D/A) impurities play central roles in controlling the physical properties of semiconductors. With continued miniaturization of information processing devices, the relationship between quantum confinement and D/A ionization energies becomes increasingly important. Here, we provide direct spectroscopic evidence that impurity D/A levels in doped semiconductor nanostructures are energetically pinned, resulting in variations in D/A binding energies with increasing quantum confinement. Using magnetic circular dichroism spectroscopy, the donor binding energies of Co2+ ions in colloidal ZnSe quantum dots have been measured as a function of quantum confinement and analyzed in conjunction with ab initio density functional theory calculations. The resulting experimental demonstration of pinned impurity levels in quantum dots has far-reaching implications for physical phenomena involving impurity-carrier interactions in doped semiconductor nanostructures, including in the emerging field of semiconductor spintronics where magnetic-dopant-carrier exchange interactions define the functionally relevant properties of diluted magnetic semiconductors.

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PubMed2005

Ab Initio simulations of nonstoichiometric Cd(x)Te(1-x) liquids.

We present ab initio molecular-dynamics simulations for Cd(x)Te(1-x) liquids where the composition is nonstoichiometric. The simulations are performed following Born-Oppenheimer molecular dynamics. The required forces are obtained from a solution of the Kohn-Sham equation using ab initio pseudopotentials. We consider stoichiometries of the form: Cd(x)Te(1-x), where x=0.2, 0.4, 0.6, and 0.8. For each composition of the melt, we consider a range of temperatures near the experimentally determined liquid temperatures. We examine the microstructural properties of the melt, the viscosity, and self-diffusion properties of the liquid as a function of the stoichiometry and temperature. We also perform an analysis of the distribution of the electronic density of states in these liquids. We find that structural changes in the local order, experimentally predicted to occur when the concentration of Cd is increased, are closely related to changes in the electronic properties of the melt.

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PubMed2005

Size-dependent spintronic properties of dilute magnetic semiconductor nanocrystals.

The electronic structure and magnetic properties of Mn-doped Ge, GaAs, and ZnSe nanocrystals are investigated using real space ab initio pseudopotentials constructed within the local spin-density approximation. The ferromagnetic and half-metallicity trends found in the bulk are preserved in the nanocrystals. However, the Mn-related impurity states become much deeper in energy with decreasing nanocrystalline size, causing the ferromagnetic stabilization to be dominated by double exchange via localized holes rather than by a Zener-like mechanism.

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PubMed2004

Ab initio calculations for the photoelectron spectra of vanadium clusters.

We report ab initio calculations for the electronic and structural properties of V(n), V(n) (-), and V(n) (+) clusters up to n=8. We performed the calculations using a real-space pseudopotential method based on the local spin density approximation for exchange and correlation. This method assumes no explicit basis. Wave functions are evaluated on a uniform grid; only one parameter, the grid spacing, is used to control convergence of the electronic properties. Charged states are easily handled in real space, in contrast to methods based on supercells where Coulombic divergences require special handling. For each size and charge state, we find the lowest energy structure. Our results for the photoelectron spectra, using the optimized structure, agree well with those obtained by experiment. We also obtain satisfactory agreement with the measured ionization potential and electron affinity, and compare our results to calculations using an explicit basis.

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PubMed2004

Viscosities of liquid CdTe near melting point from ab initio molecular-dynamics calculations.

Recent experimental results for the viscosity of liquid CdTe exhibit disparate behavior as a function of temperature. While some measurements show the expected Arrhenius-type behavior, other measurements show an anomalous temperature dependence indicating an increase in viscosity with increasing temperature. We present ab initio molecular-dynamics simulations of liquid cadmium telluride near its melting point and use the Stokes-Einstein relation to extract values of the viscosity constant. We find no anomalous behavior; the viscosity decreases monotonically with temperature and is consistent with an Arrhenius like behavior. Although calculated values are slightly smaller than those measured, the predicted activation energy agrees well with experiment.

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PubMed2004

Quantum confinement in phosphorus-doped silicon nanocrystals.

Electronic properties of phosphorus donors in hydrogenated silicon nanocrystals are investigated using a real-space ab initio pseudopotential method for systems with up to 500 atoms. We present calculations for the ionization energy, binding energy, and electron density associated with the doped nanocrystal. We find that the ionization energy for the nanocrystal is virtually independent of size. This behavior may be attributed to localization of the electron around the impurity site owing to a large electron-impurity interaction within confined systems. In contrast to this result, the calculated hyperfine splitting exhibits a strong size dependence. For small nanocrystals it greatly exceeds the bulk value. This finding agrees with recent experimental measurements.

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PubMed2003

Charge state dependent Jahn-Teller distortions of the e-center defect in crystalline Si.

The atomic and electronic structures of a lattice vacancy trapped next to an As impurity (the E-center defect) in crystalline Si are investigated using ab initio pseudopotential total energy calculations. Jahn-Teller distortions and energies, reorientation barriers, defect wave function characters, and hyperfine coupling parameters associated with (-) and (0) charge states of the E center are calculated using a combination of real-space cluster and plane wave supercell methods. For the first time in the theoretical study of this defect, the senses of the Jahn-Teller distortions in the two charge states are found to be opposite, changing from a large pairing type in (0) to a large resonant-bond type distortion in the (-) charge state, in agreement with experimental data.

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PubMed2003

Ab initio calculations for large dielectric matrices of confined systems.

Calculations for optical excitations in confined systems require knowledge of the inverse screening dielectric function epsilon(-1)(r,r(')), which plays a crucial role in determining exciton binding energies. We present a new efficient real-space method of inverting and storing large ab initio dielectric matrices of confined systems, which relies on the separability of epsilon matrix in r and r('). The method has allowed, for the first time, full ab initio calculation of epsilon(-1)(r,r(')) of dimension N approximately 270 000, and for quantum dots as large as Si35H36. The effective screening in Si quantum dots up to 1.1 nm in diameter is found to be very ineffective with average dielectric constants ranging from 1.1 to 1.4.

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PubMed2002

Hybridization and bond-orbital components in site-specific X-ray photoelectron spectra of rutile TiO2.

We have determined the Ti and O components of the rutile TiO2 valence band using the method of site-specific x-ray photoelectron spectroscopy. Comparisons with calculations based on pseudopotentials within the local density approximation reveal the hybridization of the Ti 3d, 4s, and 4p states, and the O 2s and 2p states on each site. These chemical effects are observed due to the large differences between the angular-momentum dependent matrix elements of the photoelectron process.

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PubMed2002

Highest electron affinity as a predictor of cluster anion structures.

Small clusters have a range of unique physical and chemical phenomena that are strongly size dependent. However, analysis of these phenomena often assumes that thermodynamic equilibrium conditions prevail. We compare experimentally measured and ab initio computed photoelectron spectra of bare and deuterated silicon cluster anions produced in a plasma environment. We find that the isomers detected experimentally are usually not the ground-state isomers, but metastable ones, which indicates that cluster relaxation is strongly limited kinetically by a dwell time that is much shorter than the relaxation time. We show that, under these conditions, the highest electron affinity replaces the traditional lowest total energy as the appropriate criterion for predicting isomer structures. These findings demonstrate that a stringent examination of non-equilibrium effects can be crucial for a correct analysis of cluster properties.

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