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Biomedical subjects

Jamie M Fontaine

Publications and source records attributed to Jamie M Fontaine.

2 recordsLinked to original sources

Alternative DNA-based newborn screening for glucose-6-phosphate dehydrogenase deficiency.

Newborn screening for G6PD deficiency has been carried out in several countries for more than 25 years. A semi-quantitative enzymatic assay has been used in most laboratories, however, heat inactivation during the summer can cause a significant increase in the false positive rate for this assay. We have developed an alternative DNA-based newborn screening assay for the detection of common mutations within the G6PD gene. The panel of mutations includes the common African A- mutation (G202A;A376G), the common Mediterranean mutation (C563T), and two common Chinese mutations (G1376T and G1388A). A parallel study was performed through screening a total of 4245 neonatal specimens using both the enzymatic and the DNA-based assays. In this population, 49 newborns were identified as hemizygous or homozygous for the A- mutation with an average enzyme activity of 59 microM, 323 were identified as a carrier or unaffected with an average enzyme activity of 208 microM, and no mutation was detected for the remaining 3873 specimens with an average enzyme activity of 234 microM. With this panel of mutations, more than 90% of all affected infants can be identified in our population.

Base Sequence↗

A high throughput beta-globin genotyping method by multiplexed melting temperature analysis.

For a population-based newborn screening program, challenges exist in using technological advances to improve the quality and efficiency of the existing screening program and to develop new diagnostic capabilities. A newly developed genotyping method for screening of common mutations within the beta-globin gene is described here. This genotyping system consists of three major components: an automation system for high throughput DNA extraction and PCR setup, a conventional thermal cycler, and a LightTyper instrument for post-PCR melting temperature analysis. Briefly, genomic DNA is extracted from dried blood on a filter paper using methanol and Tris buffer. Genetic fragments of interest are amplified by asymmetric PCR. Fluorescent labeled probes are added during PCR setup, which eliminates the need for any post-PCR sample handling process. Melting temperature analysis is achieved through fluorescent resonance energy transfer (FRET) reaction using the LightTyper instrument. The assay is designed to simultaneously detect three common beta-globin mutations, S(A173T), C(G172A), and E(G232A), and can identify any of the eight possible genotypes in a single reaction: AA, AE, EE, AS, SC, SS, AC, and CC (A represents wild type allele). The method was validated with a large number of samples in both a retrospective and parallel study. Results were compared to those obtained by isoelectric focusing electrophoresis. The accuracy of this genotyping method is greater than 99%.

DNA↗