Biomedical subjects

Jeesun Kim

Publications and source records attributed to Jeesun Kim.

8 recordsLinked to original sources

PubMed2006

Tudor, MBT and chromo domains gauge the degree of lysine methylation.

The post-translational modification of histones regulates many cellular processes, including transcription, replication and DNA repair. A large number of combinations of post-translational modifications are possible. This cipher is referred to as the histone code. Many of the enzymes that lay down this code have been identified. However, so far, few code-reading proteins have been identified. Here, we describe a protein-array approach for identifying methyl-specific interacting proteins. We found that not only chromo domains but also tudor and MBT domains bind to methylated peptides from the amino-terminal tails of histones H3 and H4. Binding specificity observed on the protein-domain microarray was corroborated using peptide pull-downs, surface plasma resonance and far western blotting. Thus, our studies expose tudor and MBT domains as new classes of methyl-lysine-binding protein modules, and also demonstrates that protein-domain microarrays are powerful tools for the identification of new domain types that recognize histone modifications.

Histones↗

PubMed2005

Audio-visual speech perception off the top of the head.

The study examined whether people can extract speech related information from the talker's upper face that was presented using either normally textured videos (Experiments 1 and 3) or videos showing only the outlined of the head (Experiments 2 and 4). Experiments 1 and 2 used within- and cross-modal matching tasks. In the within-modal task, observers were presented two pairs of short silent video clips that showed the top part of a talker's head. In the cross-modal task, pairs of audio and silent video clips were presented. The task was to determine the pair in which the talker said the same sentence. Performance on both tasks was better than chance for the outline as well as textured presentation suggesting that judgments were primarily based on head movements. Experiments 3 and 4 tested if observing the talker's upper face would help identify speech in noise. The results showed the viewing the talker's moving upper head produced a small but reliable improvement in speech intelligibility, however, this effect was only secure for the expressive sentences that involved greater head movements. The results suggest that people are sensitive to speech related head movements that extend beyond the mouth area and can use these to assist in language processing.

Auditory Perception↗

PubMed2004

Loss of CARM1 results in hypomethylation of thymocyte cyclic AMP-regulated phosphoprotein and deregulated early T cell development.

The coactivator-associated arginine methyltransferase, CARM1, is a positive regulator of transcription. Using high density protein arrays, we have previously identified in vitro substrates for CARM1. One of these substrates, TARPP (thymocyte cyclic AMP-regulated phosphoprotein), is expressed specifically in immature thymocytes. Here, we have demonstrated that TARPP is arginine-methylated at a single residue, Arg(650), both in vitro and in vivo. In addition, recombinant TARPP is not methylated by extracts from Carm1(-/-) cells, indicating that there is no redundancy in this pathway. We show that thymi from Carm1(-/-) embryos (E18.5) have a 5-10-fold reduction in cellularity compared with wild type littermates. Flow cytometric analysis of thymocytes revealed a decrease in the relative proportion of double negative thymocytes in Carm1(-/-) embryos because of a partial developmental arrest in the earliest thymocyte progenitor subset. These results demonstrate that CARM1 plays a significant role in promoting the differentiation of early thymocyte progenitors, possibly through its direct action on TARPP.

Amino Acid Sequence↗

PubMed2004

The effect of script on poor readers' sensitivity to dynamic visual stimuli.

The current research examined performance of good and poor readers of Thai on two tasks that assess sensitivity to dynamic visual displays. Readers of Thai, a complex alphabetic script that nonetheless has a regular orthography, were chosen in order to contrast patterns of performance with readers of Korean Hangul (a similarly regular language but one that has a simple visual format, see ). Thai poor readers were less sensitive than good readers on the two measures of dynamic visual processing; they had higher thresholds for detecting coherent movement and required longer ISIs to report group movement in the Ternus task. These results differ from those for poor readers of Korean Hangul that found no relationship between visual processing thresholds and reading skill. This contrast suggests that the expression of visual processing problems in dyslexia is mediated by the format properties of the writing system and points to the need to consider such factors in formulating brain-behavior relationships.

Child↗

PubMed2004

Amodal processing of visual speech as revealed by priming.

This study investigated the linguistic processing of visual speech (video of a talker's utterance without audio) by determining if such has the capacity to prime subsequently presented word and nonword targets. The priming procedure is well suited for the investigation of whether speech perception is amodal since visual speech primes can be used with targets presented in different modalities. To this end, a series of priming experiments were conducted using several tasks. It was found that visually spoken words (for which overt identification was poor) acted as reliable primes for repeated target words in the naming, written and auditory lexical decision tasks. These visual speech primes did not produce associative or reliable form priming. The lack of form priming suggests that the repetition priming effect was constrained by lexical level processes. That priming found in all tasks is consistent with the view that similar processes operate in both visual and auditory speech processing.

Auditory Perception↗

PubMed2004

Audio-visual interactions with intact clearly audible speech.

The effects of viewing the face of the talker (visual speech) on the processing of clearly presented intact auditory stimuli were investigated using two measures likely to be sensitive to the articulatory motor actions produced in speaking. The aim of these experiments was to highlight the need for accounts of the effects of audio-visual (AV) speech that explicitly consider the properties of articulated action. The first experiment employed a syllable-monitoring task in which participants were required to monitor for target syllables within foreign carrier phrases. An AV effect was found in that seeing a talker's moving face (moving face condition) assisted in more accurate recognition (hits and correct rejections) of spoken syllables than of auditory-only still face (still face condition) presentations. The second experiment examined processing of spoken phrases by investigating whether an AV effect would be found for estimates of phrase duration. Two effects of seeing the moving face of the talker were found. First, the moving face condition had significantly longer duration estimates than the still face auditory-only condition. Second, estimates of auditory duration made in the moving face condition reliably correlated with the actual durations whereas those made in the still face auditory condition did not. The third experiment was carried out to determine whether the stronger correlation between estimated and actual duration in the moving face condition might have been due to generic properties of AV presentation. Experiment 3 employed the procedures of the second experiment but used stimuli that were not perceived as speech although they possessed the same timing cues as those of the speech stimuli of Experiment 2. It was found that simply presenting both auditory and visual timing information did not result in more reliable duration estimates. Further, when released from the speech context (used in Experiment 2), duration estimates for the auditory-only stimuli were significantly correlated with actual durations. In all, these results demonstrate that visual speech can assist in the analysis of clearly presented auditory stimuli in tasks concerned with information provided by viewing the production of an utterance. We suggest that these findings are consistent with there being a processing link between perception and action such that viewing a talker speaking will activate speech motor schemas in the perceiver.

Adult↗

PubMed2003

Specific protein methylation defects and gene expression perturbations in coactivator-associated arginine methyltransferase 1-deficient mice.

Arginine methylation has been implicated in the regulation of gene expression. The coactivator-associated arginine methyltransferase 1 (CARM1/PRMT4) binds the p160 family of steroid receptor coactivators (SRCs). This association enhances transcriptional activation by nuclear receptors. Here, we show that embryos with a targeted disruption of CARM1 are small in size and die perinatally. The methylation of two known CARM1 substrates, poly(A)-binding protein (PABP1) and the transcriptional cofactor p300, was abolished in knockout embryos and cells. However, CARM1-dependent methylation of histone H3 was not observed. Furthermore, estrogen-responsive gene expression was aberrant in Carm1-/- fibroblasts and embryos, thus emphasizing the role of arginine methylation as a transcription activation tag. These findings provide genetic evidence for the essential role of CARM1 in estrogen-mediated transcriptional activation.

Amino Acid Sequence↗

PubMed2003

Hearing foreign voices: does knowing what is said affect visual-masked-speech detection?

We investigated audio-visual (AV) perceptual integration by examining the effect of seeing the speaker's synchronised moving face on masked-speech detection ability. Signal amplification and higher-level cognitive accounts of an AV advantage were contrasted, the latter by varying whether participants knew the language of the speaker. An AV advantage was shown for sentences whose mid-to-high-frequency acoustic envelope was highly correlated with articulator movement, regardless of knowledge of the language. For low-correlation sentences, knowledge of the language had a large impact; for participants with no knowledge of the language an AV inhibitory effect was found (providing support for reports of a compelling AV illusion). The results indicate a role for both sensory enhancement and higher-level cognitive factors in AV speech detection.

Adult↗