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Jeffrey R Errington

Publications and source records attributed to Jeffrey R Errington.

17 recordsLinked to original sources

Excess-entropy-based anomalies for a waterlike fluid.

Many thermodynamic and dynamic properties of water display unusual behavior at low enough temperatures. In a recent study, Yan et al. [Phys. Rev. Lett. 95, 130604 (2005)] identified a spherically symmetric two-scale potential that displays many of the same anomalous properties as water. More specifically, for select parametrizations of the potential, one finds that the regions where isothermal compression anomalously (i) decreases the fluid's structural order, (ii) increases its translational self-diffusivity, and (iii) increases its entropy form nested domes in the temperature-density plane. These property relationships are similar to those found for more realistic models of water. In this work, the authors provide evidence that suggests that the anomalous regions specified above can all be linked through knowledge of the excess entropy. Specifically, the authors show how entropy scaling relationships developed by Rosenfeld [Phys. Rev. A 15, 2545 (1977)] can be used to describe the region of diffusivity anomalies and to predict the state conditions for which anomalous viscosity and thermal conductivity behavior might be found.

Journal Article↗

Using available volume to predict fluid diffusivity in random media.

We propose a simple equation for predicting self-diffusivity of fluids embedded in random matrices of identical, but dynamically frozen, particles (i.e., quenched-annealed systems). The only nontrivial input is the volume available to mobile particles, which also can be predicted for two common matrix types that reflect equilibrium and nonequilibrium fluid structures. The proposed equation can account for the large differences in mobility exhibited by quenched-annealed systems with indistinguishable static pair correlations, illustrating the key role that available volume plays in transport.

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Quantitative link between single-particle dynamics and static structure of supercooled liquids.

We present evidence via molecular simulation that the supercooled fluid states of SPC/E water as well as the "repulsive" and "attractive" supercooled fluid states of a recently introduced model for colloids with short-ranged attractions are characterized by the same functional relationship between self-diffusivity and the pair correlation function. We discuss how this simple relationship connects to an earlier finding that the temperature dependency of a supercooled fluid's single-particle dynamics tracks that of its excess entropy (relative to ideal gas). The generality of this observed structure-property relationship is supported by its ability to successfully describe the nontrivial behaviors of these very different types of model systems.

Chemistry, Physical↗

Nucleation and cavitation of spherical, cylindrical, and slablike droplets and bubbles in small systems.

Computer simulations are employed to obtain subcritical isotherms of small finite sized systems inside the coexistence region. For all temperatures considered, ranging from the triple point up to the critical point, the isotherms gradually developed a sequence of sharp discontinuities as the system size increased from approximately 8 to approximately 21 molecular diameters. For the smallest system sizes, and more so close to the critical point, the isotherms appeared smooth, resembling the continuous van der Waals loop obtained from extrapolation of an analytic equation of state outside the coexistence region. As the system size was increased, isotherms in the chemical potential-density plane developed first two, then four, and finally six discontinuities. Visual inspection of selected snapshots revealed that the observed discontinuities are related to structural transitions between droplets (on the vapor side) and bubbles (on the liquid side) of spherical, cylindrical, and tetragonal shapes. A capillary drop model was developed to qualitatively rationalize these observations. Analytic results were obtained and found to be in full agreement with the computer simulation results. The analysis shows that the shape of the subcritical isotherms is dictated by a single characteristic volume (or length scale), which depends on the surface tension, compressibility, and coexistence densities. For small reduced system volumes, the model predicts that a homogeneous fluid is stable across the whole coexistence region, thus explaining the continuous van der Waals isotherms observed in the simulations. When the liquid and vapor free energies are described by means of an accurate mean-field equation of state and surface tensions from simulation are employed, the capillary model is found to describe the simulated isotherms accurately, especially for large systems (i.e., larger than about 15 molecular diameters) at low temperature (lower than about 0.85 times the critical temperature). This implies that the Laplace pressure differences can be predicted for drops as small as five molecular diameters, and as few as about 500 molecules. The theoretical study also shows that the extrema or apparent spinodal points of the finite size loops are more closely related to (finite system size) bubble and dew points than to classical spinodals. Our results are of relevance to phase transitions in nanopores and show that first order corrections to nucleation energies in finite closed systems are power laws of the inverse volume.

Journal Article↗

Thermodynamics predicts how confinement modifies the dynamics of the equilibrium hard-sphere fluid.

We study how confining the equilibrium hard-sphere fluid to restrictive one- and two-dimensional channels with smooth interacting walls modifies its structure, dynamics, and entropy using molecular dynamics and transition-matrix Monte Carlo simulations. Although confinement strongly affects local structuring, the relationships between self-diffusivity, excess entropy, and average fluid density are, to an excellent approximation, independent of channel width or particle-wall interactions. Thus, thermodynamics can be used to predict how confinement impacts dynamics.

Biological Transport↗

Calculation of phase coexistence properties and surface tensions of n-alkanes with grand-canonical transition-matrix monte carlo simulation and finite-size scaling.

Grand-canonical transition-matrix Monte Carlo is combined with configurational-bias and expanded ensemble Monte Carlo techniques to obtain saturated densities and vapor pressures of select n-alkanes. Surface tension values for butane, hexane, and octane are also computed via the finite-size scaling method of Binder. The exponential-6 model of Errington and Panagiotopoulos is used to describe the molecular interactions. The effect of the number of configurational-bias trial conformations on the efficiency of phase equilibra calculations is studied. We find that a broad range of trial conformation numbers give reasonable performance, with the optimal value increasing with decreasing temperature for a fixed chain length. Phase coexistence properties are in good agreement with literature values and are obtained with very reasonable computing resources. Similar to other recently developed n-alkane force fields, the exponential-6 model overestimates the surface tension relative to experimental values. Statistical uncertainties for coexistence properties obtained with the current approach are relatively small compared to existing methods.

Alkanes↗

Determination of surface tension in binary mixtures using transition-matrix Monte Carlo.

We present a methodology based on grand-canonical transition-matrix Monte Carlo and finite-size scaling analysis to calculate surface tensions in binary mixtures. In particular, mixture transition-matrix Monte Carlo is first used to calculate apparent, system-size-dependent free-energy barriers separating coexisting fluid phases. Finite-size scaling is then used to extrapolate these values to the infinitely large system limit to determine the true thermodynamic surface tension. A key distinction of the methodology is that it yields the entire isothermal surface-tension curve for a binary mixture in a relatively small number of simulations. We demonstrate the utility of the method by calculating surface-tension curves for three binary Lennard-Jones mixtures. While we have only examined the surface tension of simple fluids in this work, the method is general and can be extended to molecular fluids as well as to determine interfacial tensions of liquid-liquid interfaces.

Journal Article↗

Coarse-grained strategy for modeling protein stability in concentrated solutions. II: phase behavior.

We use highly efficient transition-matrix Monte Carlo simulations to determine equilibrium unfolding curves and fluid phase boundaries for solutions of coarse-grained globular proteins. The model we analyze derives the intrinsic stability of the native state and protein-protein interactions from basic information about protein sequence using heteropolymer collapse theory. It predicts that solutions of low hydrophobicity proteins generally exhibit a single liquid phase near their midpoint temperatures for unfolding, while solutions of proteins with high sequence hydrophobicity display the type of temperature-inverted, liquid-liquid transition associated with aggregation processes of proteins and other amphiphilic molecules. The phase transition occurring in solutions of the most hydrophobic protein we study extends below the unfolding curve, creating an immiscibility gap between a dilute, mostly native phase and a concentrated, mostly denatured phase. The results are qualitatively consistent with the solution behavior of hemoglobin (HbA) and its sickle variant (HbS), and they suggest that a liquid-liquid transition resulting in significant protein denaturation should generally be expected on the phase diagram of high-hydrophobicity protein solutions. The concentration fluctuations associated with this transition could be a driving force for the nonnative aggregation that can occur below the midpoint temperature.

Computer Simulation↗

Prewetting boundary tensions from Monte Carlo simulation.

We examine the boundary tension of a model system along the prewetting saturation line. Boundary tensions are evaluated through a combination of finite-size scaling and grand canonical Monte Carlo simulation. The model system consists of Lennard-Jones particles interacting with a single structureless surface. After scaling our dimensionless results with a characteristic force, we obtain a value of 2 x 10(-11) N for the boundary tension at the system's wetting temperature. This estimate is consistent with theoretical and recent experimental values.

Journal Article↗

Direct evaluation of multicomponent phase equilibria using flat-histogram methods.

We present a method for directly locating density-driven phase transitions in multicomponent systems. Phase coexistence conditions are determined through manipulation of a total density probability distribution evaluated over a density range that includes both coexisting phases. Saturation quantities are determined through appropriate averaging of density-dependent mean values of a given property of interest. We discuss how to implement the method in both the grand-canonical and isothermal-isobaric semigrand ensembles. Calculations can be conducted using any of the recently introduced flat-histogram techniques. Here, we combine the general algorithm with a transition-matrix approach to produce an efficient self-adaptive technique for determining multicomponent phase equilibrium properties. To assess the performance of the new method, we generate phase diagrams for a number of binary and ternary Lennard-Jones mixtures.

Journal Article↗

A computational study of hydration, solution structure, and dynamics in dilute carbohydrate solutions.

We report results from a molecular simulation study of the structure and dynamics of water near single carbohydrate molecules (glucose, trehalose, and sucrose) at 0 and 30 degrees C. The presence of a carbohydrate molecule has a number of significant effects on the microscopic water structure and dynamics. All three carbohydrates disrupt the tetrahedral arrangement of proximal water molecules and restrict their translational and rotational mobility. These destructuring effects and slow dynamics are the result of steric constraints imposed by the carbohydrate molecule and of the ability of a carbohydrate to form stable H bonds with water, respectively. The carbohydrates induce a pronounced decoupling between translational and rotational motions of proximal water molecules.

Journal Article↗

Determination of fluid-phase behavior using transition-matrix Monte Carlo: binary Lennard-Jones mixtures.

We present a novel computational methodology for determining fluid-phase equilibria in binary mixtures. The method is based on a combination of highly efficient transition-matrix Monte Carlo and histogram reweighting. In particular, a directed grand-canonical transition-matrix Monte Carlo scheme is used to calculate the particle-number probability distribution, after which histogram reweighting is used as a postprocessing procedure to determine the conditions of phase equilibria. To validate the methodology, we have applied it to a number of model binary Lennard-Jones systems known to exhibit nontrivial fluid-phase behavior. Although we have focused on monatomic fluids in this work, the method presented here is general and can be easily extended to more complex molecular fluids. Finally, an important feature of this method is the capability to predict the entire fluid-phase diagram of a binary mixture at fixed temperature in a single simulation.

Journal Article↗

Prewetting transitions for a model argon on solid carbon dioxide system.

Grand canonical transition matrix Monte Carlo simulations are used to investigate the phase behavior of the model argon on solid carbon dioxide system introduced by Ebner and Saam (Phys. Rev. Lett. 1977, 38, 1486). Our results indicate that the system exhibits first-order prewetting transitions at temperatures above a wetting temperature of Tw = 0.598(5) and below a critical prewetting temperature of Tpwc approximately 0.92. The wetting transition is identified by determining the temperature at which the difference between the bulk vapor-liquid and prewetting saturation chemical potentials goes to zero. Coexistence is directly located at a given temperature by obtaining a density probability distribution from simulation data and utilizing histogram reweighting to determine the conditions that satisfy phase coexistence. Structural properties of the adsorbed films are also examined.

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Solid-liquid phase coexistence of the Lennard-Jones system through phase-switch Monte Carlo simulation.

The phase-switch Monte Carlo method of Wilding and Bruce [Phys. Rev. Lett. 85, 5138 (2000)] is extended to enable calculation of solid-liquid phase coexistence for soft potentials. The method directly accesses coexistence information about a system while avoiding simulation of the interfacial region. Order parameters are introduced that allow one to define a path that connects liquid and crystalline phases. Transition matrix methods are employed to bias the sampling such that both phases are sampled in a rapid and efficient manner. Coexistence properties are determined through an analysis of specific volume probability distributions, which are generated naturally during a biased simulation. The approach is demonstrated with the Lennard-Jones system. Finite-size effects are examined and compared to those for the hard sphere system. In addition, two techniques are considered for accounting for long-range interactions. The methodology presented here is general and therefore provides a basis for its application to other soft systems.

Journal Article↗

Evaluating surface tension using grand-canonical transition-matrix Monte Carlo simulation and finite-size scaling.

This Brief Report describes an approach for determining the surface tension of a model system that is applicable over the entire liquid-vapor coexistence region. At the heart of the method is a technique for determining coexistence properties that utilize transition probabilities of attempted Monte Carlo moves during a grand canonical simulation. Finite-size scaling techniques are implemented to determine the infinite system surface tension from a series of finite-size simulations. To demonstrate the method, the surface tension of the Lennard-Jones fluid is determined at temperatures ranging from the triple point to the critical point.

Journal Article↗

Cooperative origin of low-density domains in liquid water.

We study clusters formed by water molecules possessing large enough tetrahedrality with respect to their nearest neighbors. Using Monte Carlo simulation of SPC/E water and Voronoi tessellation, we find that regions of lower density than the bulk are formed by accretion of molecules into clusters exceeding a minimum size. Clusters are predominantly linear objects and become less compact as they grow until they reach a size beyond which further accretion is not accompanied by a density decrease. The results suggest that the formation of "icelike" regions in liquid water is cooperative.

Journal Article↗