Biomedical subjects

Jeppe Olsen

Publications and source records attributed to Jeppe Olsen.

8 recordsLinked to original sources

PubMed2006

Coupled-cluster with active space selected higher amplitudes: performance of seminatural orbitals for ground and excited state calculations.

The active space approach for coupled-cluster models is generalized using the general active space concept and implemented in a string-based general coupled-cluster code. Particular attention is devoted to the choice of orbitals on which the subspace division is based. Seminatural orbitals are proposed for that purpose. These orbitals are obtained by diagonalizing only the hole-hole and particle-particle block of the one-electron density of a lower-order method. The seminatural orbitals are shown to be a good replacement for complete active space self-consistent field orbitals and avoid the ambiguities with respect to the reference determinant introduced by the latter orbitals. The seminatural orbitals also perform well in excited state calculations, including excited states with strong double excitation contributions, which usually are difficult to describe with standard coupled-cluster methods. A set of vertical excitation energies is obtained and benchmarked against full configuration interaction calculations, and alternative hierarchies of active space coupled-cluster models are proposed. As a simple application the spectroscopic constants of the C(2) B (1)Delta(g) and B(') (1)Sigma(g) (+) states are calculated using active space coupled-cluster methods and basis sets up to quadruple-zeta quality in connection with extrapolation and additivity schemes.

Journal Article↗

PubMed2006

The generalized active space concept for the relativistic treatment of electron correlation. III. Large-scale configuration interaction and multiconfiguration self-consistent-field four-component methods with application to UO2.

We present an implementation for large-scale relativistic electronic structure calculations including spin-dependent contributions and electron correlation in a fully variational procedure. The modular implementation of the double group configuration interaction (CI) program into a multiconfiguration self-consistent-field (MCSCF) code allows for the treatment of large CI expansions in both the spinor optimization step and the post-MCSCF dynamic electron correlation step. As an illustration of the potential of the new code, we calculate the spectroscopic properties of the UO2 molecule where we study the ground state and a few excited states in vertical and adiabatic calculations.

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PubMed2006

Coupled-cluster theory in a projected atomic orbital basis.

We present a biorthogonal formulation of coupled-cluster (CC) theory using a redundant projected atomic orbital (PAO) basis. The biorthogonal formulation provides simple equations, where the projectors involved in the definition of the PAO basis are absorbed in the integrals. Explicit expressions for the coupled-cluster singles and doubles equations are derived in the PAO basis. The PAO CC equations can be written in a form identical to the standard molecular orbital CC equations, only with integrals that are related to the atomic orbital integrals through different transformation matrices. The dependence of cluster amplitudes, integrals, and correlation energy contributions on the distance between the participating atomic centers and on the number of involved atomic centers is illustrated in numerical case studies. It is also discussed how the present reformulation of the CC equations opens new possibilities for reducing the number of involved parameters and thereby the computational cost.

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PubMed2005

Quadratic response functions in a second-order polarization propagator framework.

The linear and quadratic response functions have been derived for an exact state, based on an exponential parametrization of the time evolution consisting of products of exponentials for orbital rotations and for higher-order excitations. Truncating the linear response function such that the response function itself and its pole structure is correct to second order in Møller-Plesset perturbation theory, we arrive at the second-order polarization propagator approximation (SOPPA). Previous derivations of SOPPA have used the superoperator formalism, making the extension of SOPPA to quadratic and higher order response functions difficult. The derivation of the quadratic response function is described in detail, allowing molecular properties such as hyperpolarizabilities, two-photon cross sections, and excited-state properties to be calculated using the SOPPA model.

Journal Article↗

PubMed2005

The trust-region self-consistent field method in Kohn-Sham density-functional theory.

The trust-region self-consistent field (TRSCF) method is extended to the optimization of the Kohn-Sham energy. In the TRSCF method, both the Roothaan-Hall step and the density-subspace minimization step are replaced by trust-region optimizations of local approximations to the Kohn-Sham energy, leading to a controlled, monotonic convergence towards the optimized energy. Previously the TRSCF method has been developed for optimization of the Hartree-Fock energy, which is a simple quadratic function in the density matrix. However, since the Kohn-Sham energy is a nonquadratic function of the density matrix, the local energy functions must be generalized for use with the Kohn-Sham model. Such a generalization, which contains the Hartree-Fock model as a special case, is presented here. For comparison, a rederivation of the popular direct inversion in the iterative subspace (DIIS) algorithm is performed, demonstrating that the DIIS method may be viewed as a quasi-Newton method, explaining its fast local convergence. In the global region the convergence behavior of DIIS is less predictable. The related energy DIIS technique is also discussed and shown to be inappropriate for the optimization of the Kohn-Sham energy.

Algorithms↗

PubMed2005

Orbital-optimized coupled-cluster theory does not reproduce the full configuration-interaction limit.

It is shown that due to the mixing of the usual projection approach of coupled cluster with variational orbital optimization, orbital-optimized coupled cluster (OCC) fails to reproduce the full configuration-interaction (full CI) limit when the cluster operator becomes complete. It is pointed out that the fulfillment of the projected singles equations, which define the orbital gradient in Brueckner coupled cluster (BCC), is mandatory for a correct behavior. As numerical examples we present general OCC and BCC calculations up to the full CI limit on CH(2) and an active-space model of ozone. The observed deviations of OCC from full CI are of the order of the correlation error obtained in calculations with up to quadruples excitations. Thus the failure of OCC may be considered tolerable in more approximate calculations but clearly prohibitive for any benchmark application. For applications to active-space models a hybrid approach for OCC is suggested in which for active particle-hole rotations the Brueckner orbital gradient is employed, whereas for the remaining orbital rotations the variational orbital gradient is retained.

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PubMed2004

Coupled-cluster connected quadruples and quintuples corrections to the harmonic vibrational frequencies and equilibrium bond distances of HF, N(2), F(2), and CO.

Using the coupled-cluster method, we have examined the contributions from the connected quadruple and quintuple virtual excitations to the harmonic vibrational frequencies and equilibrium bond distances of HF, N(2), F(2), and CO. Whereas the largest quadruples contributions are -18.8 cm(-1) to the harmonic frequency of N(2) and 0.43 pm to the bond distance of F(2), the largest quintuples contributions are -3.9 cm(-1) to the harmonic frequency of N(2) and 0.03 pm to the bond distances of N(2) and F(2). As we improve the description by going from the coupled-cluster singles-and-doubles model with a perturbative triples correction [CCSD(T)] to the coupled-cluster singles-doubles-triples-and-quadruples model, the mean and maximum absolute errors in the calculated frequencies relative to experiment are reduced from 11.3 and 15.8 cm(-1), respectively, to 3.2 and 4.7 cm(-1); for the bond distances, the mean and maximum absolute errors are reduced from 0.16 and 0.47 pm, respectively, to 0.04 and 0.13 pm. The calculations presented here confirm previous observations that, to some extent, the relatively small errors in the CCSD(T) equilibrium bond distances and harmonic frequencies arise from a cancellation of errors in the approximate (perturbative) treatment of the connected triples and the neglect of higher-order connected excitations. Further inclusion of quintuples contributions, relativistic corrections, and adiabatic corrections reduces the mean and maximum absolute errors to 1.1 and 2.3 cm(-1), respectively, for the harmonic frequencies and to 0.02 and 0.05 pm, respectively, for the bond distances.

Journal Article↗

PubMed2004

The trust-region self-consistent field method: towards a black-box optimization in Hartree-Fock and Kohn-Sham theories.

The trust-region self-consistent field (TRSCF) method is presented for optimizing the total energy E(SCF) of Hartree-Fock theory and Kohn-Sham density-functional theory. In the TRSCF method, both the Fock/Kohn-Sham matrix diagonalization step to obtain a new density matrix and the step to determine the optimal density matrix in the subspace of the density matrices of the preceding diagonalization steps have been improved. The improvements follow from the recognition that local models to E(SCF) may be introduced by carrying out a Taylor expansion of the energy about the current density matrix. At the point of expansion, the local models have the same gradient as E(SCF) but only an approximate Hessian. The local models are therefore valid only in a restricted region-the trust region-and steps can only be taken with confidence within this region. By restricting the steps of the TRSCF model to be inside the trust region, a monotonic and significant reduction of the total energy is ensured in each iteration of the TRSCF method. Examples are given where the TRSCF method converges monotonically and smoothly, but where the standard DIIS method diverges.

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