Biomedical subjects

Jiankang Wang

Publications and source records attributed to Jiankang Wang.

5 recordsLinked to original sources

PubMed2006

A modified algorithm for the improvement of composite interval mapping.

Composite interval mapping (CIM) is the most commonly used method for mapping quantitative trait loci (QTL) with populations derived from biparental crosses. However, the algorithm implemented in the popular QTL Cartographer software may not completely ensure all its advantageous properties. In addition, different background marker selection methods may give very different mapping results, and the nature of the preferred method is not clear. A modified algorithm called inclusive composite interval mapping (ICIM) is proposed in this article. In ICIM, marker selection is conducted only once through stepwise regression by considering all marker information simultaneously, and the phenotypic values are then adjusted by all markers retained in the regression equation except the two markers flanking the current mapping interval. The adjusted phenotypic values are finally used in interval mapping (IM). The modified algorithm has a simpler form than that used in CIM, but a faster convergence speed. ICIM retains all advantages of CIM over IM and avoids the possible increase of sampling variance and the complicated background marker selection process in CIM. Extensive simulations using two genomes and various genetic models indicated that ICIM has increased detection power, a reduced false detection rate, and less biased estimates of QTL effects.

Algorithms↗

PubMed2006

QTL mapping of grain length in rice (Oryza sativa L.) using chromosome segment substitution lines.

Chromosome segment substitution (CSS) lines have the potential for use in QTL fine mapping and map-based cloning. The standard t-test used in the idealized case that each CSS line has a single segment from the donor parent is not suitable for non-idealized CSS lines carrying several substituted segments from the donor parent. In this study, we present a likelihood ratio test based on stepwise regression (RSTEP-LRT) that can be used for QTL mapping in a population consisting of non-idealized CSS lines. Stepwise regression is used to select the most important segments for the trait of interest, and the likelihood ratio test is used to calculate the LOD score of each chromosome segment. This method is statistically equivalent to the standard t-test with idealized CSS lines. To further improve the power of QTL mapping, a method is proposed to decrease multicollinearity among markers (or chromosome segments). QTL mapping with an example CSS population in rice consisting of 65 non-idealized CSS lines and 82 chromosome segments indicated that a total of 18 segments on eight of the 12 rice chromosomes harboured QTLs affecting grain length under the LOD threshold of 2.5. Three major stable QTLs were detected in all eight environments. Some minor QTLs were not detected in all environments, but they could increase or decrease the grain length constantly. These minor genes are also useful in marker-assisted gene pyramiding.

Chromosome Mapping↗

PubMed2004

Electrochemical inactivation of triclosan with boron doped diamond film electrodes.

This research investigated an electrochemical method for inactivating contaminated stockpiles of the biocidal agent, triclosan. The goal of the electrolysis was to produce products that were amenable to treatment in conventional activated sludge treatment systems. Triclosan oxidation in electrochemical cells with boron doped diamond (BDD) film anodes was investigated in aqueous solutions at a pH value of 12. Chronoamperometry experiments showed that direct oxidation of triclosan occurred at potentials below those for H2O, Cl-, or OH- oxidation. Measurable rates of triclosan oxidation began at potentials above 0.4 V with respect to the standard hydrogen electrode (SHE), while potentials of 0.5, 1.3, and 1.8 V were required to obtain measurable oxidation rates of H2O, Cl-, and OH-, respectively. At anode potentials below 2 V, the dominant electrode reaction involved direct triclosan oxidation, while indirect oxidation was the dominant pathway at higher potentials. However, cyclic voltammetry experiments showed that direct oxidation of triclosan resulted in the formation of a passivating film on the electrode that could only be removed by oxidation at potentials above 3 V. Direct triclosan oxidation showed a very weak potential dependence, suggesting that its oxidation was limited by chemical dependent factors rather than by an outer-sphere electron transfer reaction. Organic triclosan oxidation products consisted primarily of chlorinated acetic acids and chlorinated phenolic compounds. Although the byproducts of triclosan oxidation became increasingly less reactive with increasing electrolysis time, triclosan could be completely oxidized to CO2 at current densities above 2 mA/cm2. Microtox testing indicated that residual triclosan accounted for nearly all the toxicity in the treated water, despite the fact that chlorinated byproduct concentrations were significantly higher than those of triclosan itself.

Anti-Infective Agents, Local↗

PubMed2004

Understanding reduction of carbon tetrachloride at nickel surfaces.

Nickel has been found to be an effective cathode material and catalyst for reductive destruction of chlorinated solvents in contaminated water. This study investigated reductive dechlorination of carbon tetrachloride (CT) at a nickel rotating disk electrode using chronoamperometry and electrochemical impedance spectroscopy. Chronoamperometry experiments were performed to determine rates of CT reduction as a function of the electrode potential, pH, CT concentration, and temperature. The reaction products of CT dechlorination were 95 +/- 4% methane and 4.1 +/- 2.5% chloroform. Only trace levels of methylene chloride and chloromethane were produced, indicating that sequential hydrogenolysis was not the predominant pathway for methane production. Electrochemical impedance spectroscopy showed that the rate-limiting step for methane production was the transfer of the first electron to a physically adsorbed CT molecule. The temperature independence of the electron transfer coefficient and the decreasing activation energy with decreasing electrode potential indicated that the rate-limiting step involved an outer-sphere electron transfer. At neutral pH values, oxides inactivated much of the electrode surface for both CT reduction and hydrogen evolution. At lower pH values, oxide dissolution served to increase the electroactive surface area of the disk electrode. Anson analysis and kinetic modeling showed that CT adsorption to electroactive sites was a nonlinear function of the CT concentration and was in equilibrium with the bulk solution. CT dechlorination rates on nickel electrodes were 16 times slower than those on iron electrodes under similar conditions. However, CT reactions at nickel surfaces produced predominantly methane as the first detectable product, while reduction at iron surfaces produced chloroform. These results suggest that, although nickel is not a catalyst for the rate-limiting step for CT dechlorination, it may serve a catalytic role in subsequent reaction steps.

Carbon Tetrachloride↗

PubMed2003

Investigating the role of atomic hydrogen on chloroethene reactions with iron using tafel analysis and electrochemical impedance spectroscopy.

Metallic iron filings are commonly employed as reducing agents in permeable barriers used for remediating groundwater contaminated by chlorinated solvents. Reactions of trichloroethylene (TCE) and tetrachloroethylene (PCE) with zerovalent iron were investigated to determine the role of atomic hydrogen in their reductive dechlorination. Experiments simultaneously measuring dechlorination and iron corrosion rates were performed to determine the fractions of the total current going toward dechlorination and hydrogen evolution. Corrosion rates were determined using Tafel analysis, and dechlorination rates were determined from rates of byproduct generation. Electrochemical impedance spectroscopy (EIS) was used to determine the number of reactions that controlled the observed rates of chlorocarbon disappearance, as well as the role of atomic hydrogen in TCE and PCE reduction. Comparison of iron corrosion rates with those for TCE reaction showed that TCE reduction occurred almost exclusively via atomic hydrogen at low pH values and via atomic hydrogen and direct electron transfer at neutral pH values. In contrast, reduction of PCE occurred primarily via direct electron transfer at both low and neutral pH values. At low pH values and micromolar concentrations, TCE reaction rates were faster than those for PCE due to more rapid reduction of TCE by atomic hydrogen. At neutral pH values and millimolar concentrations, PCE reaction rates were faster than those for TCE. This shift in relative reaction rates was attributed to a decreasing contribution of the atomic hydrogen reaction mechanism with increasing halocarbon concentrations and pH values. The EIS data showed that all the rate limitations for TCE and PCE dechlorination occurred during the transfer of the first two electrons. Results from this study show that differences in relative reaction rates of TCE and PCE with iron are dependent on the significance of the reduction pathway involving atomic hydrogen.

Electrochemistry↗