Biomedical subjects

Jie Lian

Publications and source records attributed to Jie Lian.

14 recordsLinked to original sources

PubMed2025

Systematic decoding of functional enhancer connectomes and risk variants in human glioma.

Genetic and epigenetic variations contribute to the progression of glioma, but the mechanisms underlying these effects, particularly for enhancer-associated genetic variations in non-coding regions, still remain unclear. Here we performed high-throughput CRISPR interference screening to identify pro-tumour enhancers in glioma cells. By integrating genome-wide H3K27ac HiChIP data, we identified the target genes of these pro-tumour enhancers and revealed the essential role of enhancer connectomes in promoting glioma progression. Through systematic analysis of enhancers carrying glioma risk-associated single-nucleotide polymorphisms (SNPs), we found that these SNPs can promote glioma progression through the enhancer connectome. Using CRISPR-Cas9-mediated enhancer interference and SNP editing, we demonstrated that glioma-specific enhancer carrying the risk SNP rs2297440 regulates SOX18 expression by specifically recruiting transcription factor MEIS1 binding, thereby contributing to glioma progression. Our study sheds light on the molecular mechanisms underlying glioma susceptibility and provides potential therapeutic targets to treat glioma.

Humans↗

PubMed2024

Exploring the interactions between algae and archaea.

Algae and archaea co-exist in diverse aquatic ecosystems and play a significant role in ecological functions and biogeochemical cycles. Compared to well-studied algal-bacterial interactions, there is a lack of information on algal-archaeal interactions and how their interactions affect their physiological fitness and nutrient cycles in either artificial cultivation systems or natural environments. The vast archaeal biodiversity, as indicated by genomic sequencing and computational approaches, has stimulated great interest in exploring uncultivated archaea to expand our knowledge of algae-archaea symbiosis. In this review, we summarize the latest studies on the diversity of algae-associated archaea and their (putative) symbiotic interactions, highlight the effects of algal-archaeal interactions on biogeochemical cycles and extend such knowledge to facilitate novel archaeal isolation and a broad range of algae-based biotechnological applications.

Algal biotechnology↗

PubMed2006

Novel method for high-throughput phenotyping of sleep in mice.

Assessment of sleep in mice currently requires initial implantation of chronic electrodes for assessment of electroencephalogram (EEG) and electromyogram (EMG) followed by time to recover from surgery. Hence, it is not ideal for high-throughput screening. To address this deficiency, a method of assessment of sleep and wakefulness in mice has been developed based on assessment of activity/inactivity either by digital video analysis or by breaking infrared beams in the mouse cage. It is based on the algorithm that any episode of continuous inactivity of > or =40 s is predicted to be sleep. The method gives excellent agreement in C57BL/6J male mice with simultaneous assessment of sleep by EEG/EMG recording. The average agreement over 8,640 10-s epochs in 24 h is 92% (n = 7 mice) with agreement in individual mice being 88-94%. Average EEG/EMG determined sleep per 2-h interval across the day was 59.4 min. The estimated mean difference (bias) per 2-h interval between inactivity-defined sleep and EEG/EMG-defined sleep was only 1.0 min (95% confidence interval for mean bias -0.06 to +2.6 min). The standard deviation of differences (precision) was 7.5 min per 2-h interval with 95% limits of agreement ranging from -13.7 to +15.7 min. Although bias significantly varied by time of day (P = 0.0007), the magnitude of time-of-day differences was not large (average bias during lights on and lights off was +5.0 and -3.0 min per 2-h interval, respectively). This method has applications in chemical mutagenesis and for studies of molecular changes in brain with sleep/wakefulness.

Algorithms↗

PubMed2006

Computer modeling of ventricular rhythm during atrial fibrillation and ventricular pacing.

We propose a unified atrial fibrillation (AF)-ventricular pacing (VP) (AF-VP) model to demonstrate the effects of VP on the ventricular rhythm during atrial fibrillation AF. In this model, the AV junction (AVJ) is treated as a lumped structure characterized by refractoriness and automaticity. Bombarded by random AF impulses, the AVJ can also be invaded by the VP-induced retrograde wave. The model includes bidirectional conduction delays in the AVJ and ventricle. Both refractory period and conduction delay of the AVJ are dependent upon its recovery time. The electrotonic modulation by blocked impulses is also considered in the model. Our simulations show that, with proper parameter settings, the present model can account for most principal statistical properties of the RR intervals during AF. We further demonstrate that the AV conduction property and the ventricular rate in AF depend on both AF rate and the degree of electrotonic modulation in the AVJ. Finally, we show that multilevel interactions between AF and VP can generate various patterns of ventricular rhythm that are consistent with previous experimental observations.

Action Potentials↗

PubMed2005

How does surface modification aid in the dispersion of carbon nanofibers?

Small-angle light scattering is used to assess the dispersion behavior of vapor-grown carbon nanofibers suspended in water. These data provide the first insights into the mechanism by which surface treatment promotes dispersion. Both acid-treated and untreated nanofibers exhibit hierarchical morphology consisting of small-scale aggregates (small bundles) that agglomerate to form fractal clusters that eventually precipitate. Although the morphology of the aggregates and agglomerates is nearly independent of surface treatment, their time evolution is quite different. The time evolution of the small-scale bundles is studied by extracting the size distribution from the angle-dependence of the scattered intensity, using the maximum entropy method in conjunction with a simplified tube form factor. The bundles consist of multiple tubes possibly aggregated side-by-side. Acid oxidation has little effect on this bundle morphology. Rather acid treatment inhibits agglomeration of the bundles. The time evolution of agglomeration is followed by fitting the scattering data to a generalized fractal model. Agglomerates appear immediately after cessation of sonication for untreated fibers but only after hours for treated fibers. Eventually, however, both systems precipitate.

Journal Article↗

PubMed2003

Body surface Laplacian electrocardiogram of ventricular depolarization in normal human subjects.

INTRODUCTION: The body surface Laplacian electrocardiogram (ECG) mapping provides a noninvasive means for spatiotemporal mapping of cardiac electrical events. The aim of the present study was to explore the relationship between the Laplacian ECG and the underlying cardiac activities during ventricular depolarization in healthy human subjects. METHODS AND RESULTS: A 95-channel body surface potential ECG was recorded over the anterolateral chest from 11 healthy male subjects. The surface Laplacian (SL) ECG was estimated from the recorded potentials during QRS complex by means of a novel spline SL estimator, as well as by the conventional 5-point SL estimator for comparison purpose. A simulation study was also conducted using a realistic geometry heart-torso model in an attempt to qualitatively interpret the experimental results. For all subjects, more spatial details were observed in the SL ECG maps compared with the potential ECG maps, with spline SL more robust against noise than the 5-point SL. In total, three positive activities (denoted as P1, P2, P3) and four negative activities (denoted as N1, N2, N3, N4) in the spline SL ECG maps were observed during ventricular depolarization. Initial localized P1 and N1 activities were observed in 11 and 8 subjects, respectively. Then, the initial P1 was divided into three positive activities (P1, P2, P3) in 9 subjects. After the appearance of multiple positive activities, three negative activities (N2, N3, N4) appeared in 11, 8, and 9 subjects, respectively. Similar findings were obtained in the computer simulation study. CONCLUSION: The present study demonstrates that the SL ECG provides more spatial details than the potential ECG, and multiple simultaneously active ventricular activities could be revealed in the SL ECG maps. The results suggest that the SL ECG may provide an alternative for noninvasive mapping of cardiac electrical activity.

Adult↗

PubMed2003

Noninvasive localization of the site of origin of paced cardiac activation in human by means of a 3-D heart model.

A recently developed heart-model-based localization approach is experimentally evaluated in noninvasively localizing the site of origin of cardiac activation in a patient with a pacemaker. The heart-torso model of the patient was constructed from the contrast ultrafast computed tomography images. The site of initial paced activation in the patient was quantitatively localized and compared with the tip position of the pacemaker lead. The localization error of the inverse estimation was found to be 5.2 mm with respect to the true lead tip position. The promising result of this pilot experimental study suggests the feasibility of localizing the site of origin of cardiac activation in an experimental setting. The heart-model-based localization approach may become an alternative tool in localizing the site of origin of cardiac activation.

Aged↗

PubMed2003

The application of topical anesthesia combined with subconjunctival anesthesia for glaucoma surgery.

PURPOSE: To evaluate the feasibility, reliability and analgesia effect of topical anesthesia combined with subconjunctival anesthesia in anti-glaucomatous surgery. METHODS: Two hundred and four cases (357 eyes) underwent anti-glaucomatous surgeries under topical anesthesia with 0.5% Alcaine eye drops combined with subconjunctival anesthesia with 2% Lidocaine. The analgesic effect was analysed with visual analogue pain scale. RESULTS: Among all of 357 eyes, 62 eyes underwent peripheral iridectomy, 67 eyes underwent simple trabeculectomy, 167 eyes underwent compound brabeculectomy and 12 eyes nonpenetrating trabecular surgery. The effects of anesthesia were as follows: 304 eyes (85.2%) were painless (Grade I), 50 eyes (14.0%) were slight painful (Grade II), and 3 eyes (0.8%) were more painful (Grade III) during surgery. And no severe complications were observed in all the cases during surgery and postoperatively. Amaurosis fugax was not observed in the glaucoma patients at the late stage with narrow visual fields and poor visual ability. CONCLUSION: Topical anesthesia combined with subconjunctival anesthesia is effective, safe and simple anesthesia alternative in routine anti-glaucomatous surgery, especially for the glaucoma patients at the late stage with narrow visual fields and poor visual ability. It is worthy of being applied widely.

Adolescent↗

PubMed2002

High-resolution EEG: on the cortical equivalent dipole layer imaging.

BACKGROUND: Brain electrical activity is a spatio-temporally distributed process. Cortical imaging techniques have been developed to reconstruct cortical activity from the scalp electroencephalographic or magnetoencephalographic measurements. Several cortical imaging approaches, such as the epicortical potentials and a dipole layer accounting for the cortical activity, have been used to represent brain electrical activity. METHODS: A closed cortical dipole layer source model is used to equivalently represent brain electrical activity. The relationship between the primary brain electrical sources and the cortical equivalent dipole layer is derived from the theory of electromagnetics. Computer simulation studies were conducted using a 3-concentric-sphere head model to validate the proposed theory. The cortical equivalent dipole layer imaging approach was tested in both computer simulation and human visual evoked potential (VEP) experiments. RESULTS: The strength of the cortical equivalent dipole layer is shown to be proportional to the electrical potential over the same surface generated by primary electrical sources, had the outer medium been replaced by air. The proposed theory was validated by computer simulation in a discrete system. Simulation and VEP experimental studies suggest the feasibility of applying the cortical equivalent dipole layer imaging approach for brain imaging. CONCLUSIONS: The cortical equivalent dipole layer model can equivalently represent the primary brain electrical sources throughout the entire brain surrounded by the dipole layer. The strength of the cortical equivalent dipole layer due to primary sources can be directly calculated according to the theory developed in the present study.

Brain Mapping↗

PubMed2002

Cortical potential imaging of episodic memory encoding.

Previous findings suggest that episodic memory encoding is subserved by different brain structures that interplay and transform experience into memories. The present study aims to identify topographic location of the underlying neural generators, and correlate their activities with the subsequent memory effect using electrophysiological neuroimaging of the event-related potentials (ERPs) recorded from 11 healthy subjects participating in word encoding tasks. Cortical potentials were imaged noninvasively from scalp ERPs. Different levels of brain activation were found in the left inferior prefrontal, left temporal and left parietal lobes with different latencies after onset of event. It is concluded that these regions work jointly across both spatial and temporal domains to promote verbal memory formation.

Adult↗

PubMed2002

Spatial resolution of body surface potential and Laplacian pace mapping.

The spatial resolution (SR) of the body surface Laplacian map (BSLM) was assessed using a three-dimensional, realistically shaped, heart-torso model. The BSLMs were estimated from the body surface potential maps (BSPMs) generated by pacing different sites of the ventricle of a three-dimensional computer heart model using a novel three-dimensional spline Laplacian algorithm. Pacing was performed at a total of 88 myocardial units in five regions of the AV ring (anterior, left wall, posterior, right wall, and septum) and three regions adjacent to the AV ring in the middle anterior and posterior of the ventricles. The SR of the BSPMs and BSLMs were investigated by means of the correlation coefficient (CC) of maps. When 5 microV and 10 microV Gaussian white noises were added into the simulated BSPMs, the SR, at 36 ms after the onset of pacing, was about 5.0 +/- 1.2 mm and 5.4 +/- 1.3 mm for the BSPMs, and 3.3 +/- 0.8 mm and 4.0 +/- 0.9 mm for the BSLMs, respectively. The results of the present simulation study suggest that the BSLM has higher SR and may provide a more accurate means than the BSPMs for differentiating between the accessory pathways or the sites of other ectopic cardiac beats along the AV ring and in its neighboring regions.

Atrial Premature Complexes↗

PubMed2002

Estimation of noise level and signal to noise ratio of laplacian electrocardiogram during ventricular depolarization and repolarization.

Body surface Laplacian ECG (LECG) has demonstrated its enhanced capability to localize cardiac electrical sources closest to the recording site. The aim of the present study was to evaluate the noise level and signal to noise ratio (SNR) in the LECG as compared to the potential ECG (PECG). Such evaluation is important to determine the applicability of the LECG to localizing and imaging of cardiac electrical activity in an experimental setting. Experimental studies were conducted in six healthy men. A 150-channel PECG was recorded from the anterolateral chest and the LECG was estimated using the finite difference algorithm. The noise level in the PECG and LECG was evaluated using multiple estimation protocols. The signal level during ventricular depolarization and repolarization was also estimated, and the corresponding SNR was calculated. Different filtering techniques were examined to evaluate their effects on the noise level and SNR of the LECG and PECG. The experimental results indicate that with basic signal processing techniques (baseline adjustment, three-point moving average filter, and Wiener spatial filter), the SNR of the LECG is about 30-40% of that of the PECG. Furthermore, the SNR estimated during ventricular depolarization is about three times that obtained during ventricular repolarization for the PECG and LECG. The present study indicates that the LECG derived from the PECG using a local finite difference estimation procedure has satisfactory SNR during the periods of ventricular depolarization and repolarization, and suggests the feasibility of estimating the LECG from the recorded PECG in human subjects in an experimental setting.

Body Surface Potential Mapping↗

PubMed2002

A spline Laplacian ECG estimator in a realistic geometry volume conductor.

We have developed a spline-based Laplacian estimator over an arbitrarily shaped surface of a volume conductor and tested its applicability to Laplacian electrocardiogram (ECG) mapping. In the newly developed algorithm, estimation of the parameters associated with the spline Laplacian is formulated by seeking the general inverse of a transfer matrix. Only one spline-parameter needs to be determined through regularization in order to estimate the realistic geometry surface Laplacian from the body surface potentials. It has been demonstrated that the rich knowledge on regularization in the inverse problems can be directly applied to estimate the spline Laplacian ECG (LECG), such as the discrepancy principle. Computer simulations have been conducted to validate the new approach in a spherical volume conductor and test the feasibility of mapping cardiac electrical sources in a realistic geometry heart-torso model. The present results demonstrate that the realistic geometry spline LECG can be estimated conveniently from the body surface potentials, is more robust against measurement noise and has better performance than the conventional five-point local Laplacian estimator.

Algorithms↗

PubMed2002

An equivalent current source model and laplacian weighted minimum norm current estimates of brain electrical activity.

We have developed a method for estimating the three-dimensional distribution of equivalent current sources inside the brain from scalp potentials. Laplacian weighted minimum norm algorithm has been used in the present study to estimate the inverse solutions. A three-concentric-sphere inhomogeneous head model was used to represent the head volume conductor. A closed-form solution of the electrical potential over the scalp and inside the brain due to a point current source was developed for the three-concentric-sphere inhomogeneous head model. Computer simulation studies were conducted to validate the proposed equivalent current source imaging. Assuming source configurations as either multiple dipoles or point current sources/sinks, in computer simulations we used our method to reconstruct these sources, and compared with the equivalent dipole source imaging. Human experimental studies were also conducted and the equivalent current source imaging was performed on the visual evoked potential data. These results highlight the advantages of the equivalent current source imaging and suggest that it may become an alternative approach to imaging spatially distributed current sources-sinks in the brain and other organ systems.

Algorithms↗